Motif IL_94167.1 Version IL_94167.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	2-14	3-12	3-13	4-11	5-9	5-10	6-9	7-8
1	IL_3J9W_065➜	3J9W	0.1573		BA	LSU rRNA	G	24	U	25	G	26	G	27	A	28	U	29	G	30	*	C	556	U	557	G	558	A	559	A	560	A	561	C	562	cWW	ntSH	ncWW	tSH		tSH	ntHS	ntHS	cWW	cWW
2	IL_4IOA_001➜	4IOA	0.0790		X	LSU rRNA	G	24	U	25	G	26	G	27	A	28	U	29	G	30	*	C	520	U	521	G	522	A	523	A	524	A	525	C	526	cWW	ntSH		tSH		tSH		tHS	cWW	cWW
3	IL_5FDU_001➜	5FDU	0.0612		1A	LSU rRNA	G	24	U	25	G	26	G	27	A	28	U	29	G	30	*	C	535	U	536	G	537	A	538	A	539	A	540	C	541	cWW	ntSH		tSH		tSH		tHS	cWW	cWW
4	IL_5J7L_245➜	5J7L	0.0000	Triple sheared with non-canonical cWW	DA	LSU rRNA	G	24	U	25	G	26	G	27	A	28	U	29	G	30	*	C	510	U	511	G	512	A	513	A	514	A	515	C	516	cWW	ntSH		tSH		tSH		tHS	cWW	cWW
5	IL_3J79_015➜	3J79	0.0841		C+A	5.8S rRNA	A	17	U	18	G	19	G	20	A	21	U	22	G	23	*	C	414	U	415	G	416	A	417	A	418	A	419	U	420	cWW	ntSH	ncSW	tSH	ncSW	tSH		tHS	cWW	cWW
6	IL_4V8P_291➜	4V8P	0.0873		E2+F1	5.8S rRNA + LSU rRNA	G	16	U	17	G	18	G	19	A	20	U	21	A	22	*	U	401	U	402	G	403	A	404	A	405	A	406	C	407	cWW	ntSH		tSH		tSH		tHS	cWW	cWW
7	IL_5AJ0_018➜	5AJ0	0.1199		A3+A2	5.8S rRNA	G	13	U	14	G	15	G	16	A	17	U	18	C	19	*	G	409	U	410	G	411	A	412	A	413	A	414	C	415	cWW	ntSH		tSH	ntSH	tSH		tHS	cWW	cWW
8	IL_4V91_018➜	4V91	0.1573		4+1	5.8S rRNA	A	13	C	14	G	15	G	16	A	17	U	18	C	19	*	G	404	U	405	G	406	A	407	A	408	A	409	U	410	cWW			tSH		tSH	ntHS	tHS	cWW	cWW
9	IL_4V88_257➜	4V88	0.1144		A8+A5	5.8S rRNA	A	13	C	14	G	15	G	16	A	17	U	18	C	19	*	G	404	U	405	G	406	A	407	A	408	A	409	U	410	cWW	ntSH		tSH	ntSH	tSH		tHS	cWW	cWW
10	IL_4V9F_001➜	4V9F	0.1349	Triple sheared with non-canonical cWW	0	LSU rRNA	G	21	U	22	G	23	G	24	A	25	U	26	U	27	*	A	516	U	517	G	518	A	519	A	520	A	521	U	522	cWW	ntSH		tSH		tSH		tHS	cWW	cWW
11	IL_3J7P_017➜	3J7P	0.1592		8+5	5.8S rRNA	G	13	U	14	G	15	G	16	A	17	U	18	C	19	*	G	415	U	416	G	417	A	418	A	419	A	420	C	421	cWW	ntSH		tSH		tSH		tHS	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGGAUG*CUGAAAC	4
ACGGAUC*GUGAAAU	2
GUGGAUC*GUGAAAC	2
GUGGAUU*AUGAAAU	1
GUGGAUA*UUGAAAC	1
AUGGAUG*CUGAAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGGAU*UGAAA	9
CGGAU*UGAAA	2

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared with non-canonical cWW (2)
Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.13 | Max 0.22

Help

Coloring options: Nucleotide numbers

Copyright 2024 BGSU RNA group. Page generated in 1.4849 s