IL_95526.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	1-9	2-3	2-8	3-7	4-6	4-7	5-6
1	IL_3J7P_082➜	3J7P	0.3092	2		5	LSU rRNA	C	2446	U	2447	G	2448	A	2449	G	2450	*	C	2509	G	2510	A	2511	G	2514	cWW		tWH			tHS	cWW
2	IL_5AJ0_100➜	5AJ0	0.2543	2		A2	LSU rRNA	C	2425	U	2426	G	2427	A	2428	G	2429	*	C	2488	G	2489	A	2490	G	2493	cWW		tWH			tHS	cWW
3	IL_4V91_069➜	4V91	0.1984	2		1	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW		tWH			tHS	cWW
4	IL_4V88_310➜	4V88	0.2017	2		A5	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW		tWH			tHS	cWW
5	IL_4V9F_052➜	4V9F	0.1896	3	UAA/GAN	0	LSU rRNA	C	1456	U	1457	A	1458	A	1459	G	1460	*	C	1483	G	1484	A	1485	G	1489	cWW		tWH			tHS	cWW
6	IL_3J79_061➜	3J79	0.2032	2		A	LSU rRNA	C	1681	U	1682	A	1683	A	1684	G	1685	*	C	1728	A	1729	A	1730	G	1733	cWW		tWH			tHS	cWW
7	IL_4V8P_369➜	4V8P	0.2307	2		F1	LSU rRNA	C	1558	U	1559	A	1560	A	1561	G	1562	*	C	1610	A	1611	A	1612	G	1615	cWW		tWH			tHS	cWW
8	IL_5FDU_053➜	5FDU	0.1384	1		1A	LSU rRNA	C	1397	U	1398	A	1399	A	1400	G	1401	*	C	1422	G	1423	A	1424	G	1426	cWW		tWH			tHS	cWW
9	IL_5FDU_056➜	5FDU	0.0918	1		1A	LSU rRNA	C	1624	U	1625	A	1626	A	1627	G	1628	*	C	1463	G	1464	A	1465	G	1467	cWW		tWH			tHS	cWW
10	IL_5J7L_295➜	5J7L	0.0000	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW		tWH			tHS	cWW
11	IL_4V9F_037➜	4V9F	0.1444	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW		tWH			tHS	cWW
12	IL_4IOA_032➜	4IOA	0.1695	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW		tWH			tHS	cWW
13	IL_5J7L_277➜	5J7L	0.1540	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW		tWH			tHS	cWW
14	IL_5FDU_036➜	5FDU	0.1830	1		1A	LSU rRNA	C	1044	U	1045	A	1046	A	1047	G	1048	*	C	1199	G	1200	A	1201	G	1203	cWW		tWH			tHS	cWW
15	IL_3J9W_100➜	3J9W	0.1953	1		BA	LSU rRNA	C	1044	U	1045	A	1046	A	1047	G	1048	*	C	1199	G	1200	A	1201	G	1203	cWW		tWH			tHS	cWW
16	IL_3J7Y_020➜	3J7Y	0.1858	1		A	LSU rRNA	G	2149	U	2150	A	2151	A	2152	A	2153	*	U	2248	G	2249	A	2250	C	2252	cWW		tWH			tHS	cWW
17	IL_5AJ3_017➜	5AJ3	0.1999	1		A	SSU rRNA	U	301	U	302	U	303	A	304	A	305	*	U	397	G	398	A	399	A	401	cWW		tWH			tHS	cWW
18	IL_5AN9_051➜	5AN9	0.2381	1		N	LSU rRNA	A	3439	U	3440	A	3441	A	3442	U	3443	*	A	3463	G	3464	A	3465	U	3467	cWW		tWH			tHS	cWW
19	IL_4V91_130➜	4V91	0.2309	1		1	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW		tWH			tHS	cWW
20	IL_4V88_367➜	4V88	0.2141	1		A5	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW		tWH			tHS	cWW
21	IL_4V8P_424➜	4V8P	0.2490	1		F1	LSU rRNA	A	3092	U	3093	U	3094	A	3095	U	3096	*	A	3116	G	3117	A	3118	U	3120	cWW		tWH			tHS	cWW
22	IL_4V91_053➜	4V91	0.2620	1		1	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW		tWH	ntHW		tHS	cWW
23	IL_3J7P_065➜	3J7P	0.3118	1		5	LSU rRNA	U	1905	U	1906	A	1907	A	1908	G	1909	*	C	2067	C	2068	A	2069	A	2071	cWW		tWH	ntHW			cWW
24	IL_3J7P_137➜	3J7P	0.3060	1		5	LSU rRNA	A	4681	U	4682	U	4683	A	4684	U	4685	*	A	4705	G	4706	A	4707	U	4709	cWW	ncSH	tWH			tHS	cWW
25	IL_2XXA_014➜	2XXA	0.2760	3		G	SSRP RNA	A	62	U	63	A	64	A	65	G	66	*	C	31	G	32	A	33	U	37	cWW		ntWH			tHS	cWW
26	IL_4IOA_053➜	4IOA	0.3519	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435	cWW		tWH	ntHS		ntHS	cWW
27	IL_4V91_027➜	4V91	0.4912	0		1	LSU rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW		ntSH			tHS	cWW
28	IL_4V88_265➜	4V88	0.4466	0		A5	LSU rRNA	U	741	G	742	C	743	A	744	C	745	*	G	725	G	726	G	727	G	728	cWW		ntSH			tHS	cWW
29	IL_4V88_365➜	4V88	0.4451	2		A5	LSU rRNA	C	3084	G	3085	A	3086	A	3087	G	3088	*	U	3054	U	3055	U	3057	G	3059	cWW			ntHS			cWW
30	IL_4V9F_094➜	4V9F	0.4038	1	UAA/GAN	0	LSU rRNA	G	2754	G	2755	U	2756	A	2757	G	2758	*	U	2724	G	2725	A	2727	C	2728	cWW		ntSH			tHS	cWW
31	IL_5FDU_061➜	5FDU	0.5375	0		1A	LSU rRNA	A	1516	G	1517	A	1518	A	1519	G	1520	*	U	1566	G	1567	G	1568	U	1569	cWW		ntSH			tHS	cWW
32	IL_4V8P_428➜	4V8P	0.5387	0		F1	LSU rRNA	G	3195	G	3196	A	3197	A	3198	G	3199	*	U	3212	G	3213	A	3214	C	3215	cWW			ntHS	ntHS	tHS	cWW
33	IL_1X8W_006➜	1X8W	0.4809	1		A	Tetrahymena ribozyme RNA	C	216	C	217	A	218	A	219	G	220	*	U	253	G	254	C	255	G	257	cWW			ntHS		tHS	cWW
34	IL_3J7P_134➜	3J7P	0.6170	2		5	LSU rRNA	C	4662	G	4663	A	4664	A	4665	G	4666	*	U	4632	G	4633	A	4635	G	4637	cWW		ntSS	ntHS	ntHS		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
AUUAU*AGAAU	4
CUGAG*CGAAAG	2
UGCAC*GGGG	2
CUAAG*CGAAAG	2
CUAAG*CAAAAG	2
CGAAG*UUUUUG	1
GGUAG*UGUAC	1
GGAAG*UGAC	1
CGAAG*UGUAUG	1
CCAAG*UGCAG	1
CUAAA*UGAUG	1
AGAAG*UGGU	1
UUAAG*CUAUA	1
GUAAA*UGAAC	1
UUAAG*CGAGA	1
CUAAG*CGAUG	1
UUUAA*UGACA	1
AUAAU*AGAAU	1
UUAAG*CCAUA	1
CUAAG*CGAAAUG	1
AUAAG*CGAACCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	8
UUA*GAA	4
UAA*GAU	2
UAA*GAAA	2
UGA*GAAA	2
UAA*AAAA	2
GCA*GG	2
GUA*GUA	1
GAA*GG	1
CAA*GCA	1
GAA*GUAU	1
GAA*UUUU	1
GAA*GA	1
UAA*UAU	1
UAA*GAAAU	1
UAA*GAG	1
UUA*GAC	1
UAA*CAU	1
UAA*GAACC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_95526.1 Version IL_95526.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_95526.1 Version IL_95526.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json