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0.1 | 0.2

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Changes in PDB files used for clustering

Release 0.1 has 177 PDB files, release 0.2 has 175 PDB files, 175 of them are identical.

No equivalence class representatives have been replaced.

No new PDB files have been added.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.1 has 271 motif groups, release 0.2 has 256 motif groups, 199 of them are identical.

20 motif groups were updated, 52 groups are present only in release 0.1, 37 groups are only in release 0.2.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1HL_05993.172
2HL_72657.129
3HL_91122.124
4HL_32207.115
5HL_80583.110
6HL_54401.18
7HL_06440.18
8HL_68221.16
9HL_49433.16
10HL_40792.16
11HL_70246.16
12HL_07042.15
13HL_31251.15
14HL_69451.15
15HL_77942.15
16HL_01672.15
17HL_20764.15
18HL_60345.15
19HL_03576.15
20HL_06247.15
21HL_29382.15
22HL_32280.15
23HL_91907.15
24HL_96039.15
25HL_05272.14
26HL_84031.14
27HL_42687.14
28HL_20766.14
29HL_32133.14
30HL_06375.14
31HL_36725.14
32HL_52999.14
33HL_62578.14
34HL_22654.14
35HL_44662.14
36HL_45018.13
37HL_77652.13
38HL_42580.13
39HL_49169.13
40HL_69367.13
41HL_18213.13
42HL_27429.13
43HL_46794.13
44HL_54834.13
45HL_75196.13
46HL_93985.13
47HL_18399.13
48HL_47364.13
49HL_65994.13
50HL_62044.13
51HL_44444.13
52HL_66795.13
53HL_00293.13
54HL_04325.13
55HL_17243.13
56HL_20010.13
57HL_86123.13
58HL_12679.12
59HL_58311.12
60HL_72964.12
61HL_80301.12
62HL_86601.12
63HL_92124.12
64HL_00692.12
65HL_13707.12
66HL_65376.12
67HL_80492.12
68HL_88640.12
69HL_05510.12
70HL_13798.12
71HL_45746.12
72HL_80557.12
73HL_98577.12
74HL_31697.12
75HL_42884.12
76HL_65924.12
77HL_89161.12
78HL_32112.12
79HL_84487.12
80HL_19221.12
81HL_43963.12
82HL_70609.12
83HL_76807.12
84HL_19399.12
85HL_48274.12
86HL_57777.12
87HL_77305.12
88HL_42077.12
89HL_57904.12
90HL_77557.12
91HL_00570.11
92HL_05228.11
93HL_06589.11
94HL_17468.11
95HL_20143.11
96HL_22746.11
97HL_26579.11
98HL_30429.11
99HL_32622.11
100HL_37768.11
101HL_42437.11
102HL_48480.11
103HL_54040.11
104HL_63690.11
105HL_83277.11
106HL_97499.11
107HL_17951.11
108HL_20252.11
109HL_22931.11
110HL_27237.11
111HL_30731.11
112HL_33640.11
113HL_38138.11
114HL_45358.11Double hairpin loop based on GGA triple
115HL_54304.11
116HL_58556.11
117HL_73827.11
118HL_77783.11
119HL_92905.11
120HL_98456.11
121HL_01504.11
122HL_10523.11
123HL_20316.11
124HL_23141.11
125HL_35330.11
126HL_38429.11
127HL_59610.11
128HL_65802.11
129HL_75141.11
130HL_84126.11
131HL_88921.11
132HL_93206.11
133HL_10842.11
134HL_14467.11
135HL_18288.11
136HL_24282.11
137HL_27541.11
138HL_35758.11
139HL_38898.11
140HL_50137.11
141HL_70011.11
142HL_77981.11
143HL_84289.11
144HL_99458.11
145HL_03228.11
146HL_06089.11
147HL_12139.11
148HL_14885.11
149HL_24618.11
150HL_29052.11
151HL_36211.11
152HL_43598.11
153HL_51930.11
154HL_55766.11
155HL_61061.11
156HL_76027.11
157HL_78507.11
158HL_80822.11
159HL_90365.115S rRNA Loop C from D.radiodurans
160HL_94145.11SSU Helix 43 (h43) Hairpin Loop E.coli
161HL_00194.11
162HL_12242.11
163HL_16981.11
164HL_20806.11
165HL_24707.11
166HL_36252.11
167HL_40866.11
168HL_47810.11
169HL_52064.11
170HL_57217.11cHS platform Intercalation Site
171HL_66291.11
172HL_79390.11
173HL_80843.11
174HL_84888.11T-loop like but without tWH UA
175HL_95197.11
176HL_00238.11
177HL_04298.11
178HL_12468.11
179HL_17008.11Nova-2 KH3 domain binding hairpin
180HL_20914.11
181HL_25195.11
182HL_29962.11
183HL_41493.11
184HL_72210.11
185HL_79880.11
186HL_81949.11
187HL_85273.11
188HL_91613.11
189HL_95472.11
190HL_12532.11
191HL_25197.11
192HL_30310.11
193HL_37522.11
194HL_48426.11
195HL_53789.11
196HL_62590.11
197HL_66880.11
198HL_79902.11
199HL_83053.11SSU Helix 43 (h43) Hairpin Loop from T.th. T-loop like.