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0.1 | 0.2

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Changes in PDB files used for clustering

Release 0.1 has 142 PDB files, release 0.2 has 142 PDB files, 142 of them are identical.

No equivalence class representatives have been replaced.

No new PDB files have been added.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.1 has 172 motif groups, release 0.2 has 154 motif groups, 110 of them are identical.

13 motif groups were updated, 49 groups are present only in release 0.1, 31 groups are only in release 0.2.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1IL_30798.114
2IL_87158.111
3IL_17977.111
4IL_33742.110
5IL_36534.19
6IL_26410.19
7IL_63717.18
8IL_92741.17
9IL_16628.16
10IL_98756.16
11IL_39526.15
12IL_49609.14
13IL_78938.14
14IL_06484.14
15IL_82768.14
16IL_12437.13
17IL_71700.13
18IL_78493.13
19IL_76095.13
20IL_10326.13
21IL_53203.13
22IL_11419.13
23IL_61616.13
24IL_19669.13
25IL_41412.13
26IL_82563.13Thi-box riboswitch T-loop
27IL_85104.13
28IL_19801.13
29IL_55113.13
30IL_20048.12
31IL_78483.12
32IL_82854.12
33IL_09020.12
34IL_57785.12
35IL_94744.12Sarcin-ricin motif with extra cWW GA pair
36IL_16360.12
37IL_64838.12
38IL_74876.12
39IL_03814.12
40IL_09882.12
41IL_57870.12
42IL_64979.12
43IL_83664.12
44IL_82266.12
45IL_26781.12
46IL_53918.12
47IL_62527.12
48IL_34405.12
49IL_62718.12
50IL_02449.11
51IL_08744.11
52IL_28626.11
53IL_35361.11
54IL_43316.11
55IL_56170.11
56IL_71076.11
57IL_86213.11
58IL_02835.11
59IL_14812.11
60IL_20775.11tSH-inserted
61IL_29499.11
62IL_35496.11
63IL_47295.11
64IL_63952.11
65IL_83250.1116S h40 3WJ T.th.
66IL_86981.11Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
67IL_03110.11
68IL_09333.11SSU Helix 8 (h8) IL T. thermophilus
69IL_21031.11
70IL_57863.11
71IL_83485.11
72IL_95275.11
73IL_21254.11SSU Helix 11 (h11) IL Kink-turn T. thermophilus
74IL_31006.11tSH-tHW-L-bif-cWW
75IL_39324.11
76IL_50503.11
77IL_81728.11
78IL_87637.11
79IL_04040.11
80IL_26241.11
81IL_33041.11
82IL_61032.11
83IL_65519.11
84IL_76474.11
85IL_84308.11
86IL_87816.11
87IL_98916.11
88IL_05830.11
89IL_19417.11
90IL_33600.11
91IL_41009.11
92IL_53598.11
93IL_67328.11
94IL_76973.11
95IL_82472.11
96IL_84453.11
97IL_88737.11
98IL_12233.11
99IL_67805.11
100IL_77014.11
101IL_88865.11
102IL_00209.11
103IL_06499.11
104IL_12278.11
105IL_26786.11
106IL_41791.11
107IL_69395.11
108IL_77549.11
109IL_85679.11
110IL_90454.11

Updated motif groups