0.1 | 0.2

Changes in PDB files used for clustering

Release 0.1 has 142 PDB files, release 0.2 has 142 PDB files, 142 of them are identical.

No equivalence class representatives have been replaced.

No new PDB files have been added.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.1 has 172 motif groups, release 0.2 has 154 motif groups, 110 of them are identical.

13 motif groups were updated, 49 groups are present only in release 0.1, 31 groups are only in release 0.2.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.

Identical motif groups

#	Motif id	Instances	Description
1	IL_30798.1	14
2	IL_87158.1	11
3	IL_17977.1	11
4	IL_33742.1	10
5	IL_36534.1	9
6	IL_26410.1	9
7	IL_63717.1	8
8	IL_92741.1	7
9	IL_98756.1	6
10	IL_16628.1	6
11	IL_39526.1	5
12	IL_78938.1	4
13	IL_49609.1	4
14	IL_82768.1	4
15	IL_06484.1	4
16	IL_12437.1	3
17	IL_71700.1	3
18	IL_76095.1	3
19	IL_53203.1	3
20	IL_10326.1	3
21	IL_61616.1	3
22	IL_82563.1	3	Thi-box riboswitch T-loop
23	IL_85104.1	3
24	IL_11419.1	3
25	IL_41412.1	3
26	IL_19669.1	3
27	IL_55113.1	3
28	IL_19801.1	3
29	IL_78493.1	3
30	IL_20048.1	2
31	IL_57785.1	2
32	IL_09020.1	2
33	IL_64838.1	2
34	IL_74876.1	2
35	IL_83664.1	2
36	IL_16360.1	2
37	IL_57870.1	2
38	IL_64979.1	2
39	IL_82266.1	2
40	IL_03814.1	2
41	IL_09882.1	2
42	IL_53918.1	2
43	IL_62527.1	2
44	IL_26781.1	2
45	IL_34405.1	2
46	IL_62718.1	2
47	IL_78483.1	2
48	IL_82854.1	2
49	IL_94744.1	2	Sarcin-ricin motif with extra cWW GA pair
50	IL_02449.1	1
51	IL_08744.1	1
52	IL_28626.1	1
53	IL_35496.1	1
54	IL_47295.1	1
55	IL_63952.1	1
56	IL_83485.1	1
57	IL_02835.1	1
58	IL_14812.1	1
59	IL_20775.1	1	tSH-inserted
60	IL_29499.1	1
61	IL_57863.1	1
62	IL_81728.1	1
63	IL_87637.1	1
64	IL_98916.1	1
65	IL_03110.1	1
66	IL_09333.1	1	SSU Helix 8 (h8) IL T. thermophilus
67	IL_21031.1	1
68	IL_39324.1	1
69	IL_50503.1	1
70	IL_84308.1	1
71	IL_87816.1	1
72	IL_21254.1	1	SSU Helix 11 (h11) IL Kink-turn T. thermophilus
73	IL_33041.1	1
74	IL_61032.1	1
75	IL_65519.1	1
76	IL_76474.1	1
77	IL_82472.1	1
78	IL_84453.1	1
79	IL_88737.1	1
80	IL_04040.1	1
81	IL_26241.1	1
82	IL_33600.1	1
83	IL_41009.1	1
84	IL_53598.1	1
85	IL_67328.1	1
86	IL_76973.1	1
87	IL_90454.1	1
88	IL_05830.1	1
89	IL_19417.1	1
90	IL_67805.1	1
91	IL_77549.1	1
92	IL_85679.1	1
93	IL_12233.1	1
94	IL_41791.1	1
95	IL_69395.1	1
96	IL_86213.1	1
97	IL_00209.1	1
98	IL_06499.1	1
99	IL_12278.1	1
100	IL_26786.1	1
101	IL_35361.1	1
102	IL_43316.1	1
103	IL_56170.1	1
104	IL_71076.1	1
105	IL_83250.1	1	16S h40 3WJ T.th.
106	IL_86981.1	1	Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
107	IL_95275.1	1

Updated motif groups

#	Motif id	Instances
1	IL_45564.2	24
2	IL_69966.2	21
3	IL_17030.2	18
4	IL_29996.2	13
5	IL_33923.2	11
6	IL_47950.2	9
7	IL_26097.2	7
8	IL_39216.2	6
9	IL_36381.2	6
10	IL_65962.2	5
11	IL_20796.2	3
12	IL_87744.2	3
13	IL_97453.2	3

Removed motif groups

#	Motif id	Instances
1	IL_29070.1	140
2	IL_37431.1	112
3	IL_53935.1	29
4	IL_85670.1	27
5	IL_55389.1	12
6	IL_09381.1	8
7	IL_28652.1	6
8	IL_86322.1	6
9	IL_97204.1	6
10	IL_20312.1	6
11	IL_22458.1	6
12	IL_92985.1	6
13	IL_51068.1	5
14	IL_19813.1	4
15	IL_22243.1	4
16	IL_18861.1	3
17	IL_19775.1	3
18	IL_08981.1	3
19	IL_54175.1	3
20	IL_13128.1	3
21	IL_40542.1	3
22	IL_54308.1	3
23	IL_16858.1	3
24	IL_47648.1	2
25	IL_61636.1	2
26	IL_10861.1	2
27	IL_72026.1	2
28	IL_44893.1	1
29	IL_58589.1	1
30	IL_75582.1	1
31	IL_95865.1	1
32	IL_60928.1	1
33	IL_96203.1	1
34	IL_04151.1	1
35	IL_31791.1	1
36	IL_61226.1	1
37	IL_32210.1	1
38	IL_52375.1	1
39	IL_87473.1	1
40	IL_20940.1	1
41	IL_35355.1	1
42	IL_61940.1	1
43	IL_88360.1	1
44	IL_65332.1	1
45	IL_90018.1	1
46	IL_65493.1	1
47	IL_90243.1	1
48	IL_24704.1	1
49	IL_44199.1	1

Added motif groups

#	Motif id	Instances
1	IL_63653.1	148
2	IL_90629.1	119
3	IL_11363.1	31
4	IL_14877.1	30
5	IL_01643.1	13
6	IL_58602.1	7
7	IL_62089.1	7
8	IL_82367.1	7
9	IL_29746.1	7
10	IL_11167.1	7
11	IL_21059.1	5
12	IL_23027.1	5
13	IL_70178.1	4
14	IL_84775.1	4
15	IL_99336.1	3
16	IL_48375.1	3
17	IL_34635.1	3
18	IL_43956.1	2
19	IL_21500.1	2
20	IL_00906.1	2
21	IL_73748.1	2
22	IL_06149.1	2
23	IL_65768.1	2
24	IL_90628.1	2
25	IL_72861.1	1
26	IL_22579.1	1
27	IL_62105.1	1
28	IL_90498.1	1
29	IL_35887.1	1
30	IL_37596.1	1
31	IL_69909.1	1

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