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0.3 | 0.4

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Changes in PDB files used for clustering

Release 0.3 has 142 PDB files, release 0.4 has 142 PDB files, 142 of them are identical.

No equivalence class representatives have been replaced.

No new PDB files have been added.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.3 has 154 motif groups, release 0.4 has 162 motif groups, 106 of them are identical.

19 motif groups were updated, 29 groups are present only in release 0.3, 37 groups are only in release 0.4.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1IL_30798.213
2IL_33923.211
3IL_87158.111
4IL_33742.110
5IL_26410.19
6IL_36534.19
7IL_92741.17
8IL_62089.17
9IL_98756.16
10IL_65962.25
11IL_39526.15
12IL_49609.14
13IL_82768.14
14IL_06484.14
15IL_78938.14
16IL_39216.34
17IL_85104.13
18IL_61616.13
19IL_82563.13Thi-box riboswitch T-loop
20IL_10326.13
21IL_19669.13
22IL_53203.13
23IL_11419.13
24IL_19801.13
25IL_41412.13
26IL_55113.13
27IL_08960.13
28IL_76095.13
29IL_87744.23
30IL_99336.13
31IL_12437.13
32IL_43956.23
33IL_57785.23
34IL_76212.13
35IL_09233.13
36IL_03814.12
37IL_16360.12
38IL_59557.12
39IL_09882.12
40IL_94744.12Sarcin-ricin motif with extra cWW GA pair
41IL_62527.12
42IL_77567.12
43IL_20048.12
44IL_62718.12
45IL_74876.12
46IL_78483.12
47IL_83664.12
48IL_09020.12
49IL_64838.12
50IL_57870.12
51IL_82266.12
52IL_09333.11SSU Helix 8 (h8) IL T. thermophilus
53IL_22579.11
54IL_33041.11
55IL_39324.11
56IL_76973.11
57IL_82472.11
58IL_90454.11
59IL_04040.11
60IL_19417.11
61IL_26241.11
62IL_33600.11
63IL_50503.11
64IL_67328.11
65IL_77014.11
66IL_86213.11
67IL_05830.11
68IL_41009.11
69IL_67805.11
70IL_77549.11
71IL_86981.11Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
72IL_26786.11
73IL_53598.11
74IL_69395.11
75IL_83250.1116S h40 3WJ T.th.
76IL_95275.11
77IL_00209.11
78IL_06499.11
79IL_12233.11
80IL_28626.11
81IL_35361.11
82IL_41791.11
83IL_83485.11
84IL_87637.11
85IL_02449.11
86IL_12278.11
87IL_20775.11tSH-inserted
88IL_29499.11
89IL_35496.11
90IL_43316.11
91IL_56170.11
92IL_63952.11
93IL_02835.11
94IL_21031.11
95IL_81728.11
96IL_84308.11
97IL_87816.11
98IL_03110.11
99IL_14812.11
100IL_21254.11SSU Helix 11 (h11) IL Kink-turn T. thermophilus
101IL_31006.11tSH-tHW-L-bif-cWW
102IL_47295.11
103IL_65519.11
104IL_76474.11
105IL_84453.11
106IL_88865.11

Updated motif groups