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0.4 | 0.5

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Changes in PDB files used for clustering

Release 0.4 has 142 PDB files, release 0.5 has 171 PDB files, 137 of them are identical.

4 equivalence classes changed representatives: 1L9A1MFQ, 3HL23A3A, 3HHN3IVK, 3F1H3PYO.

30 new structures in release 0.5: 1J2B, 1KOG, 1NBS, 1T0K, 1U63, 1U6B, 1UN6, 1X8W, 1Y0Q, 1YKV, 2A64, 2AW7, 2DER, 2IL9, 2QBG, 2XXA, 2XZM, 2ZZM, 353D, 361D, 387D, 3DHS, 3IWN, 3KTW, 3NPB, 3O30, 3O58, 3P49, 3Q1Q, 3R4F.

Obsolete: 3F1H4V67.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.4 has 162 motif groups, release 0.5 has 357 motif groups, 44 of them are identical.

8 motif groups were updated, 110 groups are present only in release 0.4, 305 groups are only in release 0.5.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1IL_39526.15
2IL_76095.13
3IL_61616.13
4IL_82563.13Thi-box riboswitch T-loop
5IL_57870.12
6IL_16360.12
7IL_94744.12Sarcin-ricin motif with extra cWW GA pair
8IL_19202.12
9IL_62718.12
10IL_74876.12
11IL_09882.12
12IL_12233.11
13IL_31793.11Kink-turn from 16S H23
14IL_56170.11
15IL_87637.11
16IL_14812.11
17IL_35361.11
18IL_77549.11
19IL_89283.11
20IL_00209.11
21IL_39324.11
22IL_81728.11
23IL_02835.11
24IL_82472.11
25IL_03110.11
26IL_20775.11tSH-inserted
27IL_40845.11
28IL_63952.11
29IL_04040.11
30IL_21254.11SSU Helix 11 (h11) IL Kink-turn T. thermophilus
31IL_41009.11
32IL_65519.11
33IL_83250.1116S h40 3WJ T.th.
34IL_09333.11SSU Helix 8 (h8) IL T. thermophilus
35IL_22579.11
36IL_41791.11
37IL_83485.11
38IL_26241.11
39IL_43316.11
40IL_75688.11Part of Helix 71 (H71) junction in 23S of D.r.
41IL_86981.11Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.

Updated motif groups

#Motif idInstancesDescription
1IL_82367.47
2IL_82768.26
3IL_11167.34
4IL_78493.33
5IL_09233.23
6IL_10326.23
7IL_55113.23
8IL_57785.32

Removed motif groups

#Motif idInstancesDescription
1IL_90629.2117
2IL_89429.140
3IL_96481.139
4IL_40289.238
5IL_89723.136
6IL_14877.330
7IL_11363.230
8IL_45564.326
9IL_83385.218
10IL_47124.115
11IL_30798.213
12IL_33923.211
13IL_05994.111
14IL_87158.111
15IL_17977.210
16IL_33742.110
17IL_36534.19
18IL_26410.19
19IL_29746.38
20IL_87014.18
21IL_13862.18
22IL_63717.27
23IL_62089.17
24IL_92741.17
25IL_10358.16
26IL_90126.16
27IL_98756.16
28IL_58849.26
29IL_65962.25
30IL_72638.15
31IL_36906.15
32IL_26097.35
33IL_75673.15
34IL_71234.14
35IL_21059.24
36IL_45778.14
37IL_06484.14
38IL_78938.14
39IL_39216.34
40IL_49609.14
41IL_43956.23
42IL_53203.13
43IL_20844.13
44IL_53918.33
45IL_11419.13
46IL_85104.13
47IL_19669.13
48IL_73059.13
49IL_12437.13
50IL_19801.13
51IL_99336.13
52IL_20017.13
53IL_08960.13
54IL_26781.23
55IL_41412.13
56IL_76212.13
57IL_87744.23
58IL_09020.12
59IL_20796.32
60IL_62527.12
61IL_70339.12
62IL_83664.12
63IL_03814.12
64IL_64838.12
65IL_71700.22
66IL_77567.12
67IL_54826.12
68IL_78483.12
69IL_57193.12
70IL_90238.12
71IL_08760.12
72IL_13561.12
73IL_59557.12
74IL_82266.12
75IL_20048.12
76IL_02449.11
77IL_14789.11
78IL_26786.11
79IL_76474.11
80IL_87816.11
81IL_95275.11
82IL_28626.11
83IL_35391.11
84IL_44310.11
85IL_53598.11
86IL_76973.11
87IL_84308.11
88IL_05830.11
89IL_21031.11
90IL_29499.11
91IL_35496.11
92IL_84453.11
93IL_96669.11
94IL_19417.11
95IL_98138.11
96IL_12278.11
97IL_22078.11
98IL_67328.11
99IL_86213.11
100IL_06499.11
101IL_33041.11
102IL_47295.11
103IL_67805.11
104IL_74043.11
105IL_80837.11
106IL_90454.11
107IL_33600.11
108IL_69192.11
109IL_50503.11
110IL_69395.11

Added motif groups

#Motif idInstancesDescription
1IL_61133.1221
2IL_24421.1160
3IL_78918.151
4IL_42829.140
5IL_91286.139
6IL_91075.127
7IL_11266.125
8IL_68930.120
9IL_03728.117
10IL_49994.115
11IL_24982.114
12IL_31491.113
13IL_93479.112
14IL_33235.112
15IL_78374.112
16IL_97493.111
17IL_87738.19
18IL_47067.19
19IL_34442.19
20IL_70242.19
21IL_79143.19
22IL_33032.19
23IL_95015.19
24IL_06751.19
25IL_95965.18
26IL_16498.18
27IL_68211.18
28IL_60288.18
29IL_62873.18
30IL_38336.18
31IL_37996.17
32IL_28693.17
33IL_98047.17
34IL_80407.17
35IL_55276.16
36IL_29784.16
37IL_94031.16
38IL_33144.16
39IL_07547.16
40IL_87608.16
41IL_61831.15
42IL_66688.15
43IL_97736.15
44IL_01239.15
45IL_96804.15
46IL_58440.15
47IL_14611.15
48IL_76133.15
49IL_93335.14
50IL_19771.14
51IL_70237.14
52IL_81468.14
53IL_76795.14
54IL_99388.14
55IL_86121.14
56IL_94438.14
57IL_20328.14
58IL_23428.14
59IL_38028.14
60IL_86221.14
61IL_30092.14
62IL_89295.14
63IL_52210.14
64IL_31066.14
65IL_78732.14
66IL_21341.13
67IL_29583.13
68IL_74605.13
69IL_01628.13
70IL_34435.13
71IL_13224.13
72IL_62437.13
73IL_81608.13
74IL_13468.13
75IL_23262.13
76IL_47671.13
77IL_68345.13
78IL_16722.13
79IL_44213.13
80IL_58388.13
81IL_28399.13
82IL_60708.13
83IL_89586.13
84IL_67582.13
85IL_89613.13
86IL_97554.13
87IL_03978.12
88IL_34305.12
89IL_36852.12
90IL_46873.12
91IL_52634.12
92IL_56765.12
93IL_63749.12
94IL_67609.12
95IL_76618.12
96IL_98566.12
97IL_16166.12
98IL_43113.12
99IL_52844.12
100IL_67617.12
101IL_76760.12
102IL_97713.12
103IL_01955.12
104IL_43333.12
105IL_50828.12
106IL_66718.12
107IL_75000.12
108IL_16614.12
109IL_19935.12
110IL_44024.12
111IL_49468.12
112IL_56029.12
113IL_62499.12
114IL_77104.12
115IL_88684.12
116IL_97833.12
117IL_99404.12
118IL_51412.12
119IL_68486.12
120IL_71985.12
121IL_82794.12
122IL_99637.12
123IL_02691.12
124IL_20679.12
125IL_75870.12
126IL_79955.12
127IL_95150.12
128IL_14562.12
129IL_39081.12
130IL_54567.12
131IL_69110.12
132IL_73213.12
133IL_80202.12
134IL_95652.12
135IL_18488.12
136IL_25228.12
137IL_42644.12
138IL_45797.12
139IL_50521.12
140IL_01618.11
141IL_08624.11
142IL_12536.11
143IL_15075.11
144IL_18581.11
145IL_25897.11
146IL_39643.11
147IL_48709.11
148IL_50767.11
149IL_58873.11
150IL_61401.11
151IL_65931.11
152IL_69835.11
153IL_78858.11
154IL_80505.11
155IL_84840.11
156IL_89769.11
157IL_95813.11
158IL_97624.11
159IL_05462.11
160IL_08947.11
161IL_12912.11
162IL_22907.11
163IL_26134.11
164IL_31754.11Sarcin-ricin H95 23S rRNA E.c.
165IL_37715.11
166IL_40073.11
167IL_48723.11
168IL_50779.11
169IL_55649.11
170IL_57195.11
171IL_59183.11
172IL_63760.11
173IL_74622.11
174IL_85789.11
175IL_87841.11
176IL_90734.11
177IL_98615.11
178IL_00439.11
179IL_05754.11
180IL_09107.11
181IL_19830.11
182IL_23044.11
183IL_26868.11
184IL_29920.11
185IL_31920.11
186IL_37987.11
187IL_40287.11
188IL_47493.11
189IL_49431.11
190IL_52958.11
191IL_55934.11kink-turn-like
192IL_57517.11
193IL_59424.11
194IL_63867.11
195IL_79119.11
196IL_85805.11
197IL_88403.11
198IL_96468.11
199IL_00739.11
200IL_02478.11
201IL_05865.11
202IL_10310.11
203IL_26929.11
204IL_29949.11
205IL_32080.11
206IL_34469.11
207IL_40303.11
208IL_50881.11
209IL_53202.11
210IL_58040.11
211IL_59905.11
212IL_64796.11
213IL_66744.11SSU Helix 21 (h21) IL2 E.coli
214IL_71942.11
215IL_75415.11Pseudo-knot forming internal loop
216IL_82650.11
217IL_96697.11
218IL_02690.11
219IL_06468.1116S h40 3WJ E.c.
220IL_10746.11
221IL_13608.11
222IL_27364.11
223IL_30028.11
224IL_34589.11
225IL_40672.11
226IL_47687.11
227IL_49866.11
228IL_53988.11
229IL_56093.11
230IL_64973.11
231IL_66760.11
232IL_75765.11
233IL_77562.11
234IL_79913.11
235IL_89238.11
236IL_91604.11
237IL_97912.11
238IL_01251.11
239IL_13649.11
240IL_17247.11
241IL_35012.11
242IL_40914.11
243IL_44362.11
244IL_47741.11
245IL_49911.11
246IL_51922.11
247IL_54320.11
248IL_56096.11
249IL_63594.11
250IL_65001.11
251IL_67277.11
252IL_72595.11
253IL_78215.11
254IL_82910.11
255IL_86397.11
256IL_92280.11
257IL_97073.11
258IL_98023.11
259IL_99663.11
260IL_01299.11
261IL_02980.11
262IL_07220.11
263IL_11302.11
264IL_17323.11
265IL_20815.11
266IL_30763.11
267IL_36240.11
268IL_42300.11
269IL_45155.11
270IL_48650.11
271IL_56237.11
272IL_58545.11
273IL_60867.11
274IL_63624.11
275IL_65375.11
276IL_67286.11
277IL_76093.11
278IL_84234.11
279IL_87056.11
280IL_92311.11
281IL_99755.11
282IL_01594.11
283IL_12486.11
284IL_21025.11
285IL_28819.11
286IL_33509.11
287IL_36331.11
288IL_39230.11
289IL_48662.11
290IL_52509.11
291IL_55167.11
292IL_56427.11
293IL_58626.11
294IL_63662.11
295IL_65788.11
296IL_69599.11
297IL_74594.11
298IL_84341.11
299IL_92348.11
300IL_95735.11
301IL_98249.11
302IL_99757.11