1.13 | 1.14

Changes in PDB files used for clustering

Release 1.13 has 219 PDB files, release 1.14 has 222 PDB files, 218 of them are identical.

1 equivalence classes changed representatives: 3V2F → 4NVV.

3 new structures in release 1.14: 1VW3, 4KR6, 4KR7.

Obsolete: 3V2F → 4V8I.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 1.13 has 278 motif groups, release 1.14 has 282 motif groups, 172 of them are identical.

53 motif groups were updated, 53 groups are present only in release 1.13, 57 groups are only in release 1.14.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.

Identical motif groups

#	Motif id	Instances	Description
1	IL_02809.3	9	REV element IL with syn G \| Tandem cWW pairs (Not AU or GC)
2	IL_92114.3	9	GAAA loop receptor "platform" motif
3	IL_47444.3	9	SRP Loop E-like motif
4	IL_73000.2	7	cHS-cWS
5	IL_92321.4	7	Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
6	IL_77263.2	6	Kink-turn from U4
7	IL_28572.2	4	16S h18 kink-turn like motif
8	IL_42251.1	4
9	IL_47758.2	4	REV element IL with syn G \| Tandem cWW pairs (Not AU or GC)
10	IL_95652.3	4	SSU Helix 27 (h27) IL Sarcin-Ricin motif
11	IL_01080.1	4
12	IL_39526.4	4
13	IL_48918.3	4	Kink-turn variant
14	IL_39980.1	4
15	IL_34363.2	4	Kink-turn from 23S H42
16	IL_31066.3	4	SSU Helix 44 (h44) extension
17	IL_22732.1	4	tSH-inserted-tHS
18	IL_82188.2	4	LSU H68 IL from H.m.
19	IL_31663.1	4	23S H73 ILa : Part of larger Motif
20	IL_80348.3	3	23S H91 IL
21	IL_43946.1	3
22	IL_06180.1	3	tHS tHH bulge with S-turn
23	IL_07300.2	3
24	IL_25271.2	3	SSU Helix 8 (h8) IL E.c. and Yeast
25	IL_06211.3	3
26	IL_30840.2	3
27	IL_34628.2	3	Kink-turn
28	IL_52173.1	3
29	IL_37053.1	3	Kink-turn from 23S H58
30	IL_74876.2	3	Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
31	IL_79955.2	3	SSU Helix (23) h23 IL1
32	IL_82563.1	3	Thi-box riboswitch T-loop
33	IL_23414.1	2
34	IL_31707.1	2	Vitamin B12 aptamer
35	IL_65137.1	2	Kink-turn like motif in Group I Intron
36	IL_76095.3	2	Motif from Hairpin Ribozyme
37	IL_80093.1	2
38	IL_11751.1	2
39	IL_33842.1	2
40	IL_77076.1	2
41	IL_87548.1	2
42	IL_97833.1	2
43	IL_12147.1	2	Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
44	IL_30381.1	2	tHS tHH bulge with S-turn
45	IL_45794.1	2
46	IL_50521.1	2
47	IL_70401.1	2
48	IL_12211.1	2
49	IL_21495.1	2
50	IL_98566.1	2
51	IL_21639.1	2
52	IL_40892.1	2
53	IL_46435.1	2
54	IL_09587.1	2
55	IL_37197.1	2
56	IL_78744.1	2	Quadruple Sheared (tSH-tSH-tHS-tHS)
57	IL_90057.1	2
58	IL_94744.1	2	Sarcin-ricin motif with extra cWW GA pair
59	IL_09882.1	2
60	IL_16330.1	2
61	IL_52940.1	2
62	IL_90735.1	2
63	IL_05221.1	1
64	IL_06471.1	1
65	IL_11302.1	1
66	IL_17682.1	1	Sarcin-ricin motif from Eukaryal LSU Helix 11
67	IL_39324.1	1
68	IL_52958.1	1
69	IL_59529.1	1
70	IL_82601.1	1	Tandem cWW water-inserted CU pairs
71	IL_86981.1	1	Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
72	IL_91044.1	1
73	IL_05513.1	1
74	IL_06808.1	1	Double sheared (tSH-tSH) one bulged base.
75	IL_20775.1	1	tSH-inserted
76	IL_23639.1	1	tWH-tHS-L-cWW
77	IL_28644.1	1
78	IL_31754.1	1	Sarcin-ricin H95 23S rRNA E.c.
79	IL_43316.1	1
80	IL_53323.1	1
81	IL_59934.1	1	SSU Helix 23 (h23) Kink-turn E. coli
82	IL_66744.1	1	SSU Helix 21 (h21) IL2 E.coli
83	IL_76486.1	1	Sarcin-ricin motif with syn G
84	IL_82650.1	1
85	IL_87523.1	1
86	IL_91078.1	1
87	IL_97191.1	1	Sarcin-ricin motif with cWW UU instead of tSH basepair.
88	IL_06177.1	1	cWW AG or UU
89	IL_06847.1	1	Group II Intron IL
90	IL_11778.1	1
91	IL_21077.1	1
92	IL_25082.1	1
93	IL_30067.1	1
94	IL_49527.1	1
95	IL_53988.1	1
96	IL_60649.1	1	Kink-turn
97	IL_68767.1	1
98	IL_80505.1	1
99	IL_83250.1	1	16S h40 3WJ T.th.
100	IL_91089.1	1
101	IL_02835.1	1
102	IL_21254.1	1	SSU Helix 11 (h11) IL Kink-turn T. thermophilus
103	IL_40527.1	1	Kink-turn
104	IL_54450.1	1
105	IL_61730.1	1
106	IL_80652.1	1
107	IL_83920.1	1
108	IL_88119.1	1
109	IL_91904.1	1
110	IL_97842.1	1
111	IL_02897.1	1	Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena \| Part of H71 junction in 23S rRNA from T.th.
112	IL_09333.1	1	SSU Helix 8 (h8) IL T. thermophilus
113	IL_25307.1	1
114	IL_40845.1	1
115	IL_46306.1	1
116	IL_54470.1	1	tHS tHH bulge with S-turn
117	IL_63133.1	1	Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
118	IL_71685.1	1	Sarcin-like with an intercalated basepair
119	IL_77296.1	1
120	IL_80714.1	1
121	IL_85510.1	1
122	IL_88367.1	1
123	IL_02957.1	1
124	IL_06306.1	1
125	IL_09491.1	1
126	IL_12507.1	1
127	IL_26868.1	1
128	IL_52509.1	1
129	IL_54954.1	1	Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
130	IL_63253.1	1	LSU H77 \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
131	IL_78513.1	1
132	IL_81398.1	1
133	IL_85805.1	1
134	IL_89794.1	1
135	IL_98655.1	1	Part of H71 Junction in 26S rRNA from Yeast
136	IL_03110.1	1
137	IL_06421.1	1	Single sheared with bulged bases
138	IL_15205.1	1
139	IL_26971.1	1
140	IL_31224.1	1	23S H91 IL
141	IL_41139.1	1
142	IL_52610.1	1
143	IL_55649.1	1
144	IL_63952.1	1
145	IL_86059.1	1
146	IL_98924.1	1
147	IL_03282.1	1
148	IL_06468.1	1	16S h40 3WJ E.c.
149	IL_22909.1	1
150	IL_27640.1	1
151	IL_37347.1	1
152	IL_41791.1	1
153	IL_47687.1	1
154	IL_57977.1	1
155	IL_64589.1	1
156	IL_75415.1	1	Pseudo-knot forming internal loop
157	IL_86336.1	1
158	IL_94973.1	1	Sarcin-Ricin from Group II Intron with inserted base and poor modeling:

Updated motif groups

#	Motif id	Instances	Description
1	IL_97217.12	262	1-3 bulged nucleotides, same chain \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
2	IL_41766.7	57	Tandem cWW pairs (Not AU or GC)
3	IL_39199.5	56	Hoogsteen-edge Platform, Single bulged base
4	IL_56465.5	51	Single, unpaired intercalated base, consensus A
5	IL_44540.5	45	Sugar-edge, 1-base platform, consensus tHS
6	IL_87904.6	32	Triple sheared (tSH-tHS-tHS) no inserted bases
7	IL_82444.2	28	cWW AG or UU \| cWH basepair with syn base \| cWH basepair with syn base \| cWH basepair with syn base \| cWW AG or water inserted cWW Y-Y. \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif
8	IL_13959.5	27	Double Sheared (tSH-tHS)
9	IL_73276.6	24	C-loop
10	IL_28947.3	24	23S H91 IL \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| LSU H77 \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
11	IL_65553.9	23	Kink-turn
12	IL_93424.5	22	tSH-inserted-tHW
13	IL_92027.4	19	16S h21 S8 binding site
14	IL_85647.4	18	Sarcin-ricin parent motif with 15 Nts
15	IL_55938.5	17	LSU Helix 89 (H89) IL2. cSH Platform.
16	IL_24982.6	16	SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
17	IL_49493.5	15	Sarcin-ricin Parent Motif - bacterial LSU H95 IL
18	IL_46648.7	14	23S H91 IL \| Single-Base Intercalation Site
19	IL_94430.6	14	16S h32-h33-h34 3WJ
20	IL_43124.3	13	23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases
21	IL_31555.6	13	Tandem sheared with inserted, unpaired purine. \| Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site. \| Tandem sheared with inserted, unpaired purine. \| cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
22	IL_37104.4	13	Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases \| Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
23	IL_24546.5	10	23S H41 IL and 16S h18 IL : Has large bulge on one side
24	IL_58291.5	10	Recurrent Sub-motif found in junctions
25	IL_97057.4	7
26	IL_08926.4	7	23S H91 IL
27	IL_53635.4	7	LSU Helix 32 (H32) IL
28	IL_70237.4	6
29	IL_72158.4	6	LSU Helix 62 (H62) IL
30	IL_25230.4	6	Bacterial 5S rRNA Loop E
31	IL_13069.4	6	LSU 3WJ H32-H33-H35A
32	IL_93568.3	6	Triple Sheared (tSH-tHS-tHS) with wobble cWW.
33	IL_86357.4	6	LSU Helix 61 IL2
34	IL_02359.4	5
35	IL_44067.5	5	Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
36	IL_90133.4	5
37	IL_09530.2	5	Double S-turn motif
38	IL_79083.4	5
39	IL_87065.2	4	23S H91 IL \| Single-Base Intercalation Site
40	IL_16166.5	4	23S H91 IL
41	IL_05723.2	3
42	IL_58586.3	3
43	IL_62499.8	3
44	IL_97509.2	3	Double sheared with wobble cWW.
45	IL_98421.5	3	SSU Helix 12 (h12) IL \| SSU Helix 12 (h12) IL \| LSU Eukaryal Helix 96 (H96) IL1
46	IL_67887.2	3
47	IL_69106.2	3	Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
48	IL_94403.6	3	LSU H77
49	IL_69536.2	3	LSU Helix 96 (H96) IL2
50	IL_95150.7	2
51	IL_28003.2	2
52	IL_80494.3	2	LSU H58 IL2 H.m.
53	IL_16415.3	2	SSU Helix 23 (h23) Kink-turn T. thermophilus

Removed motif groups

#	Motif id	Instances	Description
1	IL_47174.11	219	cWW AG or water inserted cWW Y-Y.
2	IL_92109.3	15	cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
3	IL_17212.2	11	cWW AG or UU \| cWH basepair with syn base \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif
4	IL_90459.3	9	cWW AG or UU
5	IL_46301.1	7	Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site. \| Tandem sheared with inserted, unpaired purine. \| cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
6	IL_25300.3	7	16S h19 IL and 23S H41 IL
7	IL_70173.1	6	Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
8	IL_25380.1	6	LSU Helix 89 (H89) IL2
9	IL_39585.1	6	Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
10	IL_05684.1	5	tHS tHH bulge with S-turn \| Double S-turn motif
11	IL_21333.2	4	tSH-tHW-bulge
12	IL_45262.4	4
13	IL_97296.1	4	Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
14	IL_54966.1	4	cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
15	IL_98591.3	4
16	IL_38807.3	4
17	IL_47875.1	3	LSU H77 \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
18	IL_35043.1	3	cWW AG or UU \| cWH basepair with syn base \| cWH basepair with syn base
19	IL_89028.6	3	Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena \| Part of H71 junction in 23S rRNA from T.th.
20	IL_00998.1	2
21	IL_33964.1	2
22	IL_43877.1	2	Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
23	IL_96206.3	2
24	IL_23262.4	2
25	IL_46034.3	2
26	IL_15840.2	2	Triple Sheared with unpaired, inserted A
27	IL_24293.1	2	23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases \| 23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases \| Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
28	IL_37406.1	2
29	IL_39355.1	2	SSU Helix 12 (h12) IL \| LSU Eukaryal Helix 96 (H96) IL1
30	IL_46990.1	2
31	IL_87507.1	2	tHS tHH bulge with S-turn
32	IL_57785.5	2	SSU Decoding Site -- Human. Bulge-cSW-tHS
33	IL_31039.1	2
34	IL_69799.1	1
35	IL_21421.1	1
36	IL_49976.1	1
37	IL_13777.1	1	cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
38	IL_37325.1	1
39	IL_50911.1	1	16S h34 ILa : Part of larger motif
40	IL_70299.1	1
41	IL_71942.1	1
42	IL_17066.1	1
43	IL_25181.1	1
44	IL_46721.1	1
45	IL_56513.1	1
46	IL_83856.1	1
47	IL_99397.1	1	cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
48	IL_57364.1	1	LSU Helix 89 (H89) IL2
49	IL_17603.1	1
50	IL_18675.1	1	cWW-bulge-cWW
51	IL_41153.1	1
52	IL_47732.1	1
53	IL_58454.1	1

Added motif groups

#	Motif id	Instances	Description
1	IL_78141.1	228	cWW AG or UU \| cWW AG or water inserted cWW Y-Y. \| cWH basepair with syn base \| cWW AG or water inserted cWW Y-Y. \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif
2	IL_37056.1	16	1-3 bulged nucleotides, same chain \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
3	IL_67813.1	15	cWW AG or water inserted cWW Y-Y. \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWW AG or UU \| cWH basepair with syn base \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| 16S h34 ILa : Part of larger motif
4	IL_71837.1	8	cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWH basepair with syn base \| cWW AG or water inserted cWW Y-Y. \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
5	IL_65554.1	8	cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. \| Tandem sheared with inserted, unpaired purine. \| Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site. \| Tandem sheared with inserted, unpaired purine. \| cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
6	IL_55214.1	8	Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
7	IL_74856.1	8	LSU Helix 89 (H89) IL2
8	IL_64847.1	7	Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
9	IL_46960.1	5	16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
10	IL_04397.1	5
11	IL_48183.1	5	tSH-tHW-bulge
12	IL_59864.1	5
13	IL_82133.1	5	SSU Decoding Site -- Human. Bulge-cSW-tHS \| Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site. \| Tandem sheared with inserted, unpaired purine. \| cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
14	IL_16029.1	5	cWW AG or water inserted cWW Y-Y. \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
15	IL_71229.1	5
16	IL_55114.1	4	tHS tHH bulge with S-turn \| Double S-turn motif
17	IL_08763.1	4	LSU H77 \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL
18	IL_66654.1	4	Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| cWW AG or UU \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
19	IL_56594.1	4	cWW AG or UU
20	IL_15123.1	4	Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena \| Part of H71 junction in 23S rRNA from T.th.
21	IL_32261.1	4	LSU Helix 89 (H89) IL2
22	IL_89252.1	3
23	IL_37171.1	3	LSU H58 IL2 H.m.
24	IL_72641.1	3	cWW AG or UU \| cWH basepair with syn base \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) \| 16S h34 ILa : Part of larger motif
25	IL_95908.1	3	LSU H77 \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW \| cWW-bulge-cWW \| 16S h19 IL and 23S H41 IL \| cWW-bulge-cWW
26	IL_16977.1	2
27	IL_87064.1	2	tHS tHH bulge with S-turn
28	IL_90877.1	2
29	IL_05641.1	2
30	IL_25541.1	2	Triple Sheared with unpaired, inserted A
31	IL_39175.1	2
32	IL_92422.1	2
33	IL_92576.1	2
34	IL_12204.1	2
35	IL_67024.1	2
36	IL_30534.1	2
37	IL_43545.1	2	Leadzyme Motif. SSU Decoding site motif, extended. \| cWW-L-cWW-cWW \| Leadzyme Motif. LSU H101 IL2. SSU Decoding site. \| Tandem sheared with inserted, unpaired purine. \| cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
38	IL_60613.1	2
39	IL_03625.1	1
40	IL_36006.1	1
41	IL_46151.1	1	Triple Sheared with unpaired, inserted A
42	IL_62296.1	1
43	IL_03808.1	1
44	IL_23302.1	1
45	IL_64213.1	1	SSU Helix 12 (h12) IL \| LSU Eukaryal Helix 96 (H96) IL1
46	IL_72293.1	1
47	IL_25420.1	1
48	IL_73656.1	1
49	IL_25771.1	1
50	IL_41027.1	1
51	IL_26448.1	1
52	IL_41516.1	1
53	IL_96920.1	1	SSU Helix 12 (h12) IL
54	IL_45432.1	1
55	IL_86453.1	1	23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases \| 23S H73 ILa : Part of larger Motif \| Single sheared with bulged bases \| Single sheared with bulged bases \| Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
56	IL_99937.1	1