Changes in PDB files used for clustering

Release 1.14 has 222 PDB files, release 1.15 has 232 PDB files, 222 of them are identical.

No equivalence class representatives have been replaced.

10 new structures in release 1.15: 4CUV, 4CUX, 4KNQ, 4KQ0, 4KTG, 4L81, 4N0T, 4O26, 4P8Z, 4P9R.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 1.14 has 282 motif groups, release 1.15 has 304 motif groups, 167 of them are identical.

63 motif groups were updated, 52 groups are present only in release 1.14, 74 groups are only in release 1.15.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1IL_31555.613Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
2IL_58291.510Recurrent Sub-motif found in junctions
3IL_02809.39REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
4IL_47444.39SRP Loop E-like motif
5IL_92114.39GAAA loop receptor "platform" motif
6IL_08926.4723S H91 IL
7IL_64847.17Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
8IL_73000.27cHS-cWS
9IL_97057.47
10IL_77263.26Kink-turn from U4
11IL_25230.46Bacterial 5S rRNA Loop E
12IL_71229.15
13IL_04397.15
14IL_79083.45
15IL_48918.34Kink-turn variant
16IL_16166.5423S H91 IL
17IL_39526.44
18IL_05723.23
19IL_25271.23SSU Helix 8 (h8) IL E.c. and Yeast
20IL_37171.13LSU H58 IL2 H.m.
21IL_94403.63LSU H77
22IL_06211.33
23IL_43946.13
24IL_82563.13Thi-box riboswitch T-loop
25IL_74876.23Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
26IL_79955.23SSU Helix (23) h23 IL1
27IL_34628.23Kink-turn
28IL_07300.23
29IL_21495.12
30IL_92576.12
31IL_97833.12
32IL_21639.12
33IL_30381.12tHS tHH bulge with S-turn
34IL_90735.12
35IL_09587.12
36IL_16330.12
37IL_25541.12Triple Sheared with unpaired, inserted A
38IL_39175.12
39IL_50521.12
40IL_90877.12
41IL_94744.12Sarcin-ricin motif with extra cWW GA pair
42IL_09882.12
43IL_16415.32SSU Helix 23 (h23) Kink-turn T. thermophilus
44IL_31707.12Vitamin B12 aptamer
45IL_78744.12Quadruple Sheared (tSH-tSH-tHS-tHS)
46IL_23414.12
47IL_65137.12Kink-turn like motif in Group I Intron
48IL_95150.72
49IL_11751.12
50IL_33842.12
51IL_46435.12
52IL_52940.12
53IL_60613.12
54IL_67024.12
55IL_80494.32LSU H58 IL2 H.m.
56IL_87548.12
57IL_05641.12
58IL_28003.22
59IL_70401.12
60IL_76095.32Motif from Hairpin Ribozyme
61IL_92422.12
62IL_02957.11
63IL_15205.11
64IL_28644.11
65IL_41139.11
66IL_54450.11
67IL_63133.11Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
68IL_80652.11
69IL_85510.11
70IL_89794.11
71IL_03110.11
72IL_06177.11cWW AG or UU
73IL_09333.11SSU Helix 8 (h8) IL T. thermophilus
74IL_25420.11
75IL_37347.11
76IL_41516.11
77IL_49527.11
78IL_55649.11
79IL_63253.11LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
80IL_71685.11Sarcin-like with an intercalated basepair
81IL_77296.11
82IL_80714.11
83IL_85805.11
84IL_97842.11
85IL_03282.11
86IL_22909.11
87IL_57977.11
88IL_63952.11
89IL_72293.11
90IL_78513.11
91IL_81398.11
92IL_86059.11
93IL_98655.11Part of H71 Junction in 26S rRNA from Yeast
94IL_03808.11
95IL_06306.11
96IL_23302.11
97IL_26448.11
98IL_39324.11
99IL_45432.11
100IL_52509.11
101IL_86336.11
102IL_91044.11
103IL_94973.11Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
104IL_98924.11
105IL_06468.1116S h40 3WJ E.c.
106IL_11302.11
107IL_17682.11Sarcin-ricin motif from Eukaryal LSU Helix 11
108IL_26868.11
109IL_31754.11Sarcin-ricin H95 23S rRNA E.c.
110IL_46151.11Triple Sheared with unpaired, inserted A
111IL_52610.11
112IL_59934.11SSU Helix 23 (h23) Kink-turn E. coli
113IL_73656.11
114IL_82601.11Tandem cWW water-inserted CU pairs
115IL_86981.11Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
116IL_91078.11
117IL_99937.11
118IL_05221.11
119IL_06808.11Double sheared (tSH-tSH) one bulged base.
120IL_20775.11tSH-inserted
121IL_23639.11tWH-tHS-L-cWW
122IL_26971.11
123IL_40527.11Kink-turn
124IL_66744.11SSU Helix 21 (h21) IL2 E.coli
125IL_82650.11
126IL_87523.11
127IL_91089.11
128IL_96920.11SSU Helix 12 (h12) IL
129IL_02835.11
130IL_05513.11
131IL_06847.11Group II Intron IL
132IL_11778.11
133IL_21077.11
134IL_25082.11
135IL_27640.11
136IL_40845.11
137IL_52958.11
138IL_60649.11Kink-turn
139IL_75415.11Pseudo-knot forming internal loop
140IL_83250.1116S h40 3WJ T.th.
141IL_02897.11Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
142IL_12507.11
143IL_21254.11SSU Helix 11 (h11) IL Kink-turn T. thermophilus
144IL_36006.11
145IL_41027.11
146IL_47687.11
147IL_53988.11
148IL_62296.11
149IL_80505.11
150IL_83920.11
151IL_88367.11
152IL_97191.11Sarcin-ricin motif with cWW UU instead of tSH basepair.

Updated motif groups

#Motif idInstancesDescription
1IL_97217.132981-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
2IL_41766.870Tandem cWW pairs (Not AU or GC)
3IL_39199.662Hoogsteen-edge Platform, Single bulged base
4IL_56465.654Single, unpaired intercalated base, consensus A
5IL_44540.651Sugar-edge, 1-base platform, consensus tHS
6IL_82444.338cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
7IL_87904.735Triple sheared (tSH-tHS-tHS) no inserted bases
8IL_13959.631Double Sheared (tSH-tHS)
9IL_73276.726C-loop
10IL_93424.626tSH-inserted-tHW
11IL_65553.1024Kink-turn
12IL_92027.52116S h21 S8 binding site
13IL_55938.621LSU Helix 89 (H89) IL2. cSH Platform.
14IL_85647.520Sarcin-ricin parent motif with 15 Nts
15IL_67813.219cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
16IL_24982.717SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
17IL_49493.616Sarcin-ricin Parent Motif - bacterial LSU H95 IL
18IL_46648.81623S H91 IL | Single-Base Intercalation Site
19IL_37104.515Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
20IL_94430.71516S h32-h33-h34 3WJ
21IL_65554.28cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
22IL_74856.28LSU Helix 89 (H89) IL2
23IL_53635.58LSU Helix 32 (H32) IL
24IL_13069.57LSU 3WJ H32-H33-H35A
25IL_44067.67Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
26IL_24546.6723S H41 IL and 16S h18 IL : Has large bulge on one side
27IL_70237.57
28IL_93568.47Triple Sheared (tSH-tHS-tHS) with wobble cWW.
29IL_72158.57LSU Helix 62 (H62) IL
30IL_86357.57LSU Helix 61 IL2
31IL_48183.26tSH-tHW-bulge
32IL_90133.56
33IL_55114.26Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif
34IL_82188.36LSU H68 IL from H.m.
35IL_16029.26cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
36IL_02359.56
37IL_59864.26
38IL_39980.25
39IL_31066.45SSU Helix 44 (h44) extension
40IL_15123.25Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
41IL_34363.35Kink-turn from 23S H42
42IL_01080.25
43IL_28572.3516S h18 kink-turn like motif
44IL_47758.35REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
45IL_87065.3523S H91 IL | Single-Base Intercalation Site
46IL_95652.45SSU Helix 27 (h27) IL Sarcin-Ricin motif
47IL_30840.34
48IL_89252.24
49IL_32261.24LSU Helix 89 (H89) IL2
50IL_98421.64SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
51IL_37053.24Kink-turn from 23S H58
52IL_69536.34LSU Helix 96 (H96) IL2
53IL_09530.34Double S-turn motif
54IL_12211.23
55IL_40892.23
56IL_77076.23
57IL_45794.23
58IL_37197.23
59IL_12204.23
60IL_62499.93
61IL_72641.23cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
62IL_95908.22LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
63IL_69106.32Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.

Removed motif groups

#Motif idInstancesDescription
1IL_78141.1228cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
2IL_28947.32423S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
3IL_37056.1161-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
4IL_43124.31323S H73 ILa : Part of larger Motif | Single sheared with bulged bases
5IL_55214.18Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
6IL_71837.18cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
7IL_92321.47Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
8IL_82133.15SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
9IL_46960.1516S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
10IL_22732.14tSH-inserted-tHS
11IL_42251.14
12IL_66654.14Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
13IL_08763.14LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL
14IL_56594.14cWW AG or UU
15IL_31663.1423S H73 ILa : Part of larger Motif
16IL_52173.13
17IL_06180.13tHS tHH bulge with S-turn
18IL_80348.3323S H91 IL
19IL_97509.23Double sheared with wobble cWW.
20IL_67887.23
21IL_58586.33
22IL_80093.12
23IL_98566.12
24IL_30534.12
25IL_43545.12Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
26IL_87064.12tHS tHH bulge with S-turn
27IL_12147.12Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
28IL_16977.12
29IL_90057.12
30IL_03625.11
31IL_61730.11
32IL_91904.11
33IL_25307.11
34IL_41791.11
35IL_53323.11
36IL_64213.11SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
37IL_06421.11Single sheared with bulged bases
38IL_25771.11
39IL_54470.11tHS tHH bulge with S-turn
40IL_64589.11
41IL_06471.11
42IL_54954.11Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
43IL_30067.11
44IL_43316.11
45IL_86453.1123S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
46IL_09491.11
47IL_68767.11
48IL_31224.1123S H91 IL
49IL_46306.11
50IL_88119.11
51IL_59529.11
52IL_76486.11Sarcin-ricin motif with syn G

Added motif groups

#Motif idInstancesDescription
1IL_83000.1260cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
2IL_04465.1311-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
3IL_77277.11623S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
4IL_03128.1141-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H41 IL and 16S h18 IL : Has large bulge on one side
5IL_21761.111Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
6IL_84950.19LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
7IL_11015.19Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases
8IL_25549.19cWW AG or UU | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
9IL_32987.17cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
10IL_96952.17Double sheared with wobble cWW.
11IL_59745.16Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
12IL_21427.15tHS tHH bulge with S-turn | tSH-inserted-tHS
13IL_09698.1516S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL
14IL_49668.14
15IL_83339.14
16IL_19493.14Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
17IL_98601.14
18IL_22658.14Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
19IL_26910.1323S H91 IL
20IL_70089.13
21IL_51247.13
22IL_45592.1323S H91 IL
23IL_94519.13
24IL_03337.13tSH-inserted-tHS
25IL_81597.13SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | tSH-tHW-bulge
26IL_38328.13cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
27IL_68668.13
28IL_19451.12
29IL_39439.12
30IL_59563.12Sarcin-ricin motif with syn G
31IL_98172.12
32IL_06413.12LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
33IL_40041.12
34IL_00734.12
35IL_30323.1216S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
36IL_56250.12tHS tHH bulge with S-turn
37IL_03252.12
38IL_14901.12tHS tHH bulge with S-turn
39IL_37914.12
40IL_67128.12
41IL_17204.12tHS tHH bulge with S-turn
42IL_38207.1223S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
43IL_03362.12
44IL_18783.12
45IL_49445.12Triple sheared (tSH-tHS-tHS) no inserted bases
46IL_98073.12Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
47IL_29989.11
48IL_70529.11
49IL_07252.11
50IL_40364.11
51IL_51572.11
52IL_59907.11
53IL_72367.11
54IL_86060.11
55IL_99784.11
56IL_02257.11
57IL_43284.11cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
58IL_54696.11SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
59IL_61352.11
60IL_73367.11
61IL_89463.11
62IL_35267.11
63IL_65681.11
64IL_92886.11cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
65IL_22953.11Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
66IL_47702.11
67IL_57079.11
68IL_79910.11
69IL_48036.11
70IL_57359.1123S H91 IL
71IL_68457.11tSH-inserted-tHS
72IL_25926.11
73IL_58270.11
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