Changes in PDB files used for clustering

Release 1.14 has 222 PDB files, release 1.15 has 232 PDB files, 222 of them are identical.

No equivalence class representatives have been replaced.

10 new structures in release 1.15: 4CUV, 4CUX, 4KNQ, 4KQ0, 4KTG, 4L81, 4N0T, 4O26, 4P8Z, 4P9R.

No equivalence class representatives have been obsoleted.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 1.14 has 282 motif groups, release 1.15 has 304 motif groups, 167 of them are identical.

63 motif groups were updated, 52 groups are present only in release 1.14, 74 groups are only in release 1.15.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.


Identical motif groups

#Motif idInstancesDescription
1IL_31555.613Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
2IL_58291.510Recurrent Sub-motif found in junctions
3IL_92114.39GAAA loop receptor "platform" motif
4IL_02809.39REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
5IL_47444.39SRP Loop E-like motif
6IL_97057.47
7IL_64847.17Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
8IL_73000.27cHS-cWS
9IL_08926.4723S H91 IL
10IL_77263.26Kink-turn from U4
11IL_25230.46Bacterial 5S rRNA Loop E
12IL_71229.15
13IL_04397.15
14IL_79083.45
15IL_39526.44
16IL_16166.5423S H91 IL
17IL_48918.34Kink-turn variant
18IL_06211.33
19IL_43946.13
20IL_94403.63LSU H77
21IL_34628.23Kink-turn
22IL_82563.13Thi-box riboswitch T-loop
23IL_07300.23
24IL_74876.23Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
25IL_05723.23
26IL_25271.23SSU Helix 8 (h8) IL E.c. and Yeast
27IL_37171.13LSU H58 IL2 H.m.
28IL_79955.23SSU Helix (23) h23 IL1
29IL_09587.12
30IL_16330.12
31IL_25541.12Triple Sheared with unpaired, inserted A
32IL_39175.12
33IL_87548.12
34IL_09882.12
35IL_16415.32SSU Helix 23 (h23) Kink-turn T. thermophilus
36IL_31707.12Vitamin B12 aptamer
37IL_50521.12
38IL_92422.12
39IL_23414.12
40IL_92576.12
41IL_97833.12
42IL_11751.12
43IL_33842.12
44IL_65137.12Kink-turn like motif in Group I Intron
45IL_90735.12
46IL_46435.12
47IL_52940.12
48IL_60613.12
49IL_78744.12Quadruple Sheared (tSH-tSH-tHS-tHS)
50IL_90877.12
51IL_94744.12Sarcin-ricin motif with extra cWW GA pair
52IL_05641.12
53IL_28003.22
54IL_67024.12
55IL_21495.12
56IL_95150.72
57IL_21639.12
58IL_30381.12tHS tHH bulge with S-turn
59IL_70401.12
60IL_76095.32Motif from Hairpin Ribozyme
61IL_80494.32LSU H58 IL2 H.m.
62IL_03282.11
63IL_22909.11
64IL_42891.11
65IL_49527.11
66IL_55649.11
67IL_63253.11LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
68IL_76263.11
69IL_80505.11
70IL_83920.11
71IL_03808.11
72IL_06306.11
73IL_23302.11
74IL_26448.11
75IL_39324.11
76IL_57977.11
77IL_63952.11
78IL_71685.11Sarcin-like with an intercalated basepair
79IL_80652.11
80IL_85510.11
81IL_88367.11
82IL_97191.11Sarcin-ricin motif with cWW UU instead of tSH basepair.
83IL_06468.1116S h40 3WJ E.c.
84IL_11302.11
85IL_17682.11Sarcin-ricin motif from Eukaryal LSU Helix 11
86IL_26868.11
87IL_31754.11Sarcin-ricin H95 23S rRNA E.c.
88IL_45432.11
89IL_52509.11
90IL_72293.11
91IL_77296.11
92IL_80714.11
93IL_85805.11
94IL_89794.11
95IL_05221.11
96IL_06808.11Double sheared (tSH-tSH) one bulged base.
97IL_20775.11tSH-inserted
98IL_23639.11tWH-tHS-L-cWW
99IL_26971.11
100IL_40527.11Kink-turn
101IL_46151.11Triple Sheared with unpaired, inserted A
102IL_52610.11
103IL_59934.11SSU Helix 23 (h23) Kink-turn E. coli
104IL_78513.11
105IL_81398.11
106IL_86059.11
107IL_97842.11
108IL_02835.11
109IL_05513.11
110IL_06847.11Group II Intron IL
111IL_11778.11
112IL_21077.11
113IL_25082.11
114IL_27640.11
115IL_40845.11
116IL_66744.11SSU Helix 21 (h21) IL2 E.coli
117IL_73656.11
118IL_86336.11
119IL_98655.11Part of H71 Junction in 26S rRNA from Yeast
120IL_02897.11Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
121IL_12507.11
122IL_21254.11SSU Helix 11 (h11) IL Kink-turn T. thermophilus
123IL_36006.11
124IL_41027.11
125IL_52958.11
126IL_60649.11Kink-turn
127IL_82601.11Tandem cWW water-inserted CU pairs
128IL_86981.11Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
129IL_91044.11
130IL_94973.11Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
131IL_98924.11
132IL_02957.11
133IL_15205.11
134IL_28644.11
135IL_41139.11
136IL_47687.11
137IL_53988.11
138IL_62296.11
139IL_68827.11Reverse Kink-Turn
140IL_75415.11Pseudo-knot forming internal loop
141IL_82650.11
142IL_87394.11
143IL_91078.11
144IL_99937.11
145IL_03110.11
146IL_06177.11cWW AG or UU
147IL_09333.11SSU Helix 8 (h8) IL T. thermophilus
148IL_25420.11
149IL_37347.11
150IL_41516.11
151IL_54450.11
152IL_63133.11Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
153IL_83250.1116S h40 3WJ T.th.
154IL_87523.11
155IL_91089.11
156IL_96920.11SSU Helix 12 (h12) IL

Updated motif groups

#Motif idInstancesDescription
1IL_97217.132981-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
2IL_41766.870Tandem cWW pairs (Not AU or GC)
3IL_39199.662Hoogsteen-edge Platform, Single bulged base
4IL_56465.654Single, unpaired intercalated base, consensus A
5IL_44540.651Sugar-edge, 1-base platform, consensus tHS
6IL_82444.338cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
7IL_87904.735Triple sheared (tSH-tHS-tHS) no inserted bases
8IL_13959.631Double Sheared (tSH-tHS)
9IL_93424.626tSH-inserted-tHW
10IL_73276.726C-loop
11IL_65553.1024Kink-turn
12IL_92027.52116S h21 S8 binding site
13IL_55938.621LSU Helix 89 (H89) IL2. cSH Platform.
14IL_85647.520Sarcin-ricin parent motif with 15 Nts
15IL_67813.219cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
16IL_24982.717SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
17IL_49493.616Sarcin-ricin Parent Motif - bacterial LSU H95 IL
18IL_46648.81623S H91 IL | Single-Base Intercalation Site
19IL_37104.515Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
20IL_94430.71516S h32-h33-h34 3WJ
21IL_65554.28cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
22IL_74856.28LSU Helix 89 (H89) IL2
23IL_53635.58LSU Helix 32 (H32) IL
24IL_13069.57LSU 3WJ H32-H33-H35A
25IL_44067.67Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
26IL_24546.6723S H41 IL and 16S h18 IL : Has large bulge on one side
27IL_70237.57
28IL_93568.47Triple Sheared (tSH-tHS-tHS) with wobble cWW.
29IL_72158.57LSU Helix 62 (H62) IL
30IL_86357.57LSU Helix 61 IL2
31IL_90133.56
32IL_55114.26Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif
33IL_82188.36LSU H68 IL from H.m.
34IL_16029.26cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
35IL_02359.56
36IL_59864.26
37IL_48183.26tSH-tHW-bulge
38IL_31066.45SSU Helix 44 (h44) extension
39IL_15123.25Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
40IL_34363.35Kink-turn from 23S H42
41IL_01080.25
42IL_28572.3516S h18 kink-turn like motif
43IL_47758.35REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
44IL_87065.3523S H91 IL | Single-Base Intercalation Site
45IL_95652.45SSU Helix 27 (h27) IL Sarcin-Ricin motif
46IL_39980.25
47IL_89252.24
48IL_32261.24LSU Helix 89 (H89) IL2
49IL_98421.64SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
50IL_37053.24Kink-turn from 23S H58
51IL_69536.34LSU Helix 96 (H96) IL2
52IL_09530.34Double S-turn motif
53IL_30840.34
54IL_40892.23
55IL_77076.23
56IL_45794.23
57IL_37197.23
58IL_12204.23
59IL_62499.93
60IL_72641.23cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
61IL_12211.23
62IL_69106.32Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
63IL_95908.22LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW

Removed motif groups

#Motif idInstancesDescription
1IL_78141.1228cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
2IL_28947.32423S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
3IL_37056.1161-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
4IL_43124.31323S H73 ILa : Part of larger Motif | Single sheared with bulged bases
5IL_71837.18cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
6IL_55214.18Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
7IL_92321.47Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
8IL_46960.1516S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
9IL_82133.15SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
10IL_56594.14cWW AG or UU
11IL_31663.1423S H73 ILa : Part of larger Motif
12IL_22732.14tSH-inserted-tHS
13IL_42251.14
14IL_66654.14Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
15IL_08763.14LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL
16IL_58586.33
17IL_52173.13
18IL_06180.13tHS tHH bulge with S-turn
19IL_80348.3323S H91 IL
20IL_97509.23Double sheared with wobble cWW.
21IL_67887.23
22IL_30534.12
23IL_43545.12Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
24IL_87064.12tHS tHH bulge with S-turn
25IL_12147.12Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
26IL_16977.12
27IL_90057.12
28IL_80093.12
29IL_98566.12
30IL_09491.11
31IL_68767.11
32IL_31224.1123S H91 IL
33IL_46306.11
34IL_88119.11
35IL_59529.11
36IL_76486.11Sarcin-ricin motif with syn G
37IL_03625.11
38IL_61730.11
39IL_91904.11
40IL_25307.11
41IL_41791.11
42IL_53323.11
43IL_64213.11SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
44IL_06421.11Single sheared with bulged bases
45IL_25771.11
46IL_54470.11tHS tHH bulge with S-turn
47IL_64589.11
48IL_06471.11
49IL_54954.11Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
50IL_30067.11
51IL_43316.11
52IL_86453.1123S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)

Added motif groups

#Motif idInstancesDescription
1IL_83000.1260cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
2IL_04465.1311-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
3IL_77277.11623S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
4IL_03128.1141-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H41 IL and 16S h18 IL : Has large bulge on one side
5IL_21761.111Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
6IL_84950.19LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
7IL_11015.19Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases
8IL_25549.19cWW AG or UU | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
9IL_32987.17cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
10IL_96952.17Double sheared with wobble cWW.
11IL_59745.16Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
12IL_21427.15tHS tHH bulge with S-turn | tSH-inserted-tHS
13IL_09698.1516S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL
14IL_49668.14
15IL_83339.14
16IL_19493.14Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
17IL_98601.14
18IL_22658.14Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
19IL_38328.13cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
20IL_68668.13
21IL_26910.1323S H91 IL
22IL_70089.13
23IL_51247.13
24IL_45592.1323S H91 IL
25IL_94519.13
26IL_03337.13tSH-inserted-tHS
27IL_81597.13SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | tSH-tHW-bulge
28IL_03362.12
29IL_18783.12
30IL_49445.12Triple sheared (tSH-tHS-tHS) no inserted bases
31IL_98073.12Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
32IL_19451.12
33IL_39439.12
34IL_59563.12Sarcin-ricin motif with syn G
35IL_98172.12
36IL_06413.12LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
37IL_40041.12
38IL_00734.12
39IL_30323.1216S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
40IL_56250.12tHS tHH bulge with S-turn
41IL_03252.12
42IL_14901.12tHS tHH bulge with S-turn
43IL_37914.12
44IL_67128.12
45IL_17204.12tHS tHH bulge with S-turn
46IL_38207.1223S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
47IL_25926.11
48IL_58270.11
49IL_29989.11
50IL_70529.11
51IL_07252.11
52IL_40364.11
53IL_51572.11
54IL_59907.11
55IL_72367.11
56IL_86060.11
57IL_99784.11
58IL_02257.11
59IL_43284.11cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
60IL_54696.11SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
61IL_61352.11
62IL_73367.11
63IL_89463.11
64IL_35267.11
65IL_65681.11
66IL_92886.11cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
67IL_22953.11Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
68IL_47702.11
69IL_57079.11
70IL_79910.11
71IL_48036.11
72IL_57359.1123S H91 IL
73IL_68457.11tSH-inserted-tHS