[{"num_instances":5,"num_nucleotides":7,"alignment":{"IL_2AW7_068":["2AW7|1|A|G|1455","2AW7|1|A|A|1456","2AW7|1|A|G|1457","2AW7|1|A|U|1445","2AW7|1|A|A|1446","2AW7|1|A|A|1447","2AW7|1|A|C|1448"],"IL_1LNG_001":["1LNG|1|B|G|152","1LNG|1|B|A|153","1LNG|1|B|G|154","1LNG|1|B|U|175","1LNG|1|B|A|176","1LNG|1|B|A|177","1LNG|1|B|C|178"],"IL_2ZJR_101":["2ZJR|1|X|G|2818","2ZJR|1|X|G|2819","2ZJR|1|X|C|2820","2ZJR|1|X|G|2846","2ZJR|1|X|G|2847","2ZJR|1|X|A|2848","2ZJR|1|X|C|2849"],"IL_1FJG_057":["1FJG|1|A|C|1407","1FJG|1|A|A|1408","1FJG|1|A|C|1409","1FJG|1|A|G|1491","1FJG|1|A|A|1492","1FJG|1|A|A|1493","1FJG|1|A|G|1494"],"IL_2PXV_001":["2PXV|1|B|C|167","2PXV|1|B|A|168","2PXV|1|B|A|169","2PXV|1|B|U|139","2PXV|1|B|C|141","2PXV|1|B|C|142","2PXV|1|B|G|144"]},"motif_id":"IL_01239.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_02359.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"16_tSS,cWW-cSW,tHH-tHS-cWW---bif-tWH-tSH"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_2XZM_077":["2XZM|1|A|G|1459","2XZM|1|A|U|1460","2XZM|1|A|A|1461","2XZM|1|A|U|1462","2XZM|1|A|U|1463","2XZM|1|A|U|1464","2XZM|1|A|C|1465","2XZM|1|A|G|1485","2XZM|1|A|U|1486","2XZM|1|A|A|1487","2XZM|1|A|C|1490"]},"motif_id":"IL_02690.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-cSS-R-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_02691.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"13_cWW-cWW-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1S72_054":["1S72|1|0|C|1521","1S72|1|0|A|1522","1S72|1|0|G|1523","1S72|1|0|U|1524","1S72|1|0|G|1525","1S72|1|0|A|1526","1S72|1|0|A|1527","1S72|1|0|A|1528","1S72|1|0|G|1529","1S72|1|0|C|1662","1S72|1|0|G|1663","1S72|1|0|A|1664","1S72|1|0|G|1665"]},"motif_id":"IL_02835.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":26,"alignment":{"IL_3U5H_150":["3U5H|1|8|A|44","3U5H|1|8|C|45","3U5H|1|8|G|46","3U5H|1|8|C|47","3U5H|1|8|A|48","3U5H|1|8|G|49","3U5H|1|8|C|50","3U5H|1|8|G|51","3U5H|1|8|A|52","3U5H|1|8|A|53","3U5H|1|8|A|54","3U5H|1|8|U|55","3U5H|1|8|G|56","3U5H|1|8|C|57","3U5H|1|8|G|58","3U5H|1|8|A|59","3U5H|1|8|U|60","3U5H|1|8|A|61","3U5H|1|8|C|62","3U5H|1|8|G|63","3U5H|1|8|U|64","3U5H|1|8|A|96","3U5H|1|8|A|97","3U5H|1|8|U|98","3U5H|1|8|C|99","3U5H|1|8|U|100"]},"motif_id":"IL_02957.1","chainbreak":"21","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1S72_011":["1S72|1|0|C|280","1S72|1|0|U|281","1S72|1|0|C|282","1S72|1|0|U|283","1S72|1|0|C|284","1S72|1|0|A|285","1S72|1|0|U|286","1S72|1|0|C|287","1S72|1|0|G|365","1S72|1|0|U|366","1S72|1|0|G|367","1S72|1|0|C|368","1S72|1|0|G|369"]},"motif_id":"IL_03110.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-L-L-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3SD3_001":["3SD3|1|A|G|4","3SD3|1|A|A|5","3SD3|1|A|G|6","3SD3|1|A|U|7","3SD3|1|A|A|8","3SD3|1|A|G|9","3SD3|1|A|U|77","3SD3|1|A|G|78","3SD3|1|A|C|79","3SD3|1|A|A|80","3SD3|1|A|U|81","3SD3|1|A|C|82","3SD3|1|A|C|83","3SD3|1|A|G|84","3SD3|1|A|C|85"]},"motif_id":"IL_03741.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-L-tHS-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3U5H_021":["3U5H|1|5|G|531","3U5H|1|5|A|532","3U5H|1|5|A|533","3U5H|1|5|G|535","3U5H|1|5|U|536","3U5H|1|5|A|537","3U5H|1|5|G|538","3U5H|1|5|U|553","3U5H|1|5|A|554","3U5H|1|5|U|555","3U5H|1|5|U|556","3U5H|1|5|A|557","3U5H|1|5|A|559","3U5H|1|5|G|560","3U5H|1|5|C|561"]},"motif_id":"IL_05221.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":5,"alignment":{"IL_2QBG_079":["2QBG|1|B|A|2054","2QBG|1|B|G|2056","2QBG|1|B|C|2612","2QBG|1|B|A|2614","2QBG|1|B|U|2615"]},"motif_id":"IL_05462.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5F_037":["3U5F|1|6|U|649","3U5F|1|6|U|650","3U5F|1|6|G|652","3U5F|1|6|C|653","3U5F|1|6|G|677","3U5F|1|6|A|678","3U5F|1|6|U|679","3U5F|1|6|U|680","3U5F|1|6|U|681","3U5F|1|6|C|682","3U5F|1|6|C|683","3U5F|1|6|A|684","3U5F|1|6|A|685"]},"motif_id":"IL_06306.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-R-L-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_055":["2AW7|1|A|C|1158","2AW7|1|A|G|1160","2AW7|1|A|C|1161","2AW7|1|A|G|1175","2AW7|1|A|A|1176","2AW7|1|A|G|1177","2AW7|1|A|G|1178","2AW7|1|A|A|1179","2AW7|1|A|A|1180","2AW7|1|A|G|1181"]},"motif_id":"IL_06468.1","chainbreak":"3","common_name":"16S h40 3WJ E.c.","annotation":"16S h40 IL adjacent to 3WJ","bp_signature":"cWW-tWH-R-R-R-cWW-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2QBZ_003":["2QBZ|1|X|U|28","2QBZ|1|X|G|29","2QBZ|1|X|A|30","2QBZ|1|X|G|31","2QBZ|1|X|U|153","2QBZ|1|X|A|154","2QBZ|1|X|A|156","2QBZ|1|X|G|157"]},"motif_id":"IL_06808.1","chainbreak":"4","common_name":"Double sheared (tSH-tSH) one bulged base.","annotation":"","bp_signature":"cWW-tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_07375.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1FJG_009":["1FJG|1|A|G|148","1FJG|1|A|A|149","1FJG|1|A|C|150","1FJG|1|A|A|151","1FJG|1|A|A|152","1FJG|1|A|C|153","1FJG|1|A|G|168","1FJG|1|A|C|169","1FJG|1|A|U|170","1FJG|1|A|A|171","1FJG|1|A|A|172","1FJG|1|A|C|174"]},"motif_id":"IL_09333.1","chainbreak":"6","common_name":"SSU Helix 8 (h8) IL T. thermophilus","annotation":"","bp_signature":"cWW-tWH-tWH-tHW-tHW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_09348.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"07_cWW--cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_09390.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"07_cWW---cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_1KD5_001":["1KD5|1|A|U|3","1KD5|1|A|C|4","1KD5|1|A|A|5","1KD5|1|A|C|6","1KD5|1|A|A|7","1KD5|1|A|G|8","1KD5|1|B|U|3","1KD5|1|B|C|4","1KD5|1|B|A|5","1KD5|1|B|C|6","1KD5|1|B|A|7","1KD5|1|B|G|8"],"IL_283D_001":["283D|1|A|C|4","283D|1|A|G|5","283D|1|A|A|6","283D|1|A|A|7","283D|1|A|A|8","283D|1|A|G|9","283D|1|A|C|4||||12_555","283D|1|A|G|5||||12_555","283D|1|A|A|6||||12_555","283D|1|A|A|7||||12_555","283D|1|A|A|8||||12_555","283D|1|A|G|9||||12_555"]},"motif_id":"IL_09882.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHW-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10109.1","chainbreak":"6","common_name":"H71 junction in 23S rRNA of T.th.","annotation":"","bp_signature":"13_cWW--cHW---cSH,cSH----cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10804.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"05_cWW-cWW,tSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11167.3","chainbreak":"6","common_name":"","annotation":"","bp_signature":"14_cWW--tHW-tHW-bif-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_023":["2AW7|1|A|G|450","2AW7|1|A|A|451","2AW7|1|A|A|452","2AW7|1|A|G|453","2AW7|1|A|G|454","2AW7|1|A|U|479","2AW7|1|A|U|480","2AW7|1|A|G|481","2AW7|1|A|A|482","2AW7|1|A|C|483"]},"motif_id":"IL_11302.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-tHW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11594.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"05_cWW-cWW--cHH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11616.1","chainbreak":"5","common_name":"cWH basepair with syn base","annotation":"","bp_signature":"06_cWW-cWH-cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_1S72_100":["1S72|1|9|G|21","1S72|1|9|G|22","1S72|1|9|G|25","1S72|1|9|C|26","1S72|1|9|C|27","1S72|1|9|U|28","1S72|1|9|A|54","1S72|1|9|U|55","1S72|1|9|A|56","1S72|1|9|A|57","1S72|1|9|G|58","1S72|1|9|C|59"],"IL_3U5H_144":["3U5H|1|7|G|21","3U5H|1|7|A|23","3U5H|1|7|A|24","3U5H|1|7|G|25","3U5H|1|7|C|26","3U5H|1|7|A|27","3U5H|1|7|U|53","3U5H|1|7|U|54","3U5H|1|7|A|55","3U5H|1|7|A|56","3U5H|1|7|G|57","3U5H|1|7|C|58"]},"motif_id":"IL_12211.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_12233.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-R-R-R-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_2XZM_087":["2XZM|1|A|U|1622","2XZM|1|A|A|1623","2XZM|1|A|G|1624","2XZM|1|A|U|1625","2XZM|1|A|A|1626","2XZM|1|A|A|1627","2XZM|1|A|C|1628","2XZM|1|A|G|1697","2XZM|1|A|G|1698","2XZM|1|A|A|1699","2XZM|1|A|A|1700","2XZM|1|A|C|1701","2XZM|1|A|A|1702","2XZM|1|A|A|1703"]},"motif_id":"IL_12486.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13069.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"04_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13740.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"06_cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13959.1","chainbreak":"6","common_name":"Double sheared","annotation":"","bp_signature":"08_cWW-tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_14225.1","chainbreak":"6","common_name":"","annotation":"one bulged base","bp_signature":"08_cWW-tHS-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_4A1B_016":["4A1B|1|1|G|449","4A1B|1|1|C|450","4A1B|1|1|A|451","4A1B|1|1|U|452","4A1B|1|1|A|453","4A1B|1|1|A|454","4A1B|1|1|G|455","4A1B|1|1|U|523","4A1B|1|1|G|524","4A1B|1|1|U|526","4A1B|1|1|A|527","4A1B|1|1|C|528"]},"motif_id":"IL_15205.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cSW-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_15840.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-R-tHS-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_16166.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_16252.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"07_cWW--cWW"}, {"num_instances":2,"num_nucleotides":25,"alignment":{"IL_3U5H_057":["3U5H|1|5|G|1194","3U5H|1|5|A|1195","3U5H|1|5|A|1197","3U5H|1|5|C|1198","3U5H|1|5|C|1199","3U5H|1|5|A|1200","3U5H|1|5|C|1201","3U5H|1|5|A|1202","3U5H|1|5|A|1203","3U5H|1|5|A|1204","3U5H|1|5|A|1205","3U5H|1|5|U|1299","3U5H|1|5|G|1300","3U5H|1|5|A|1301","3U5H|1|5|A|1303","3U5H|1|5|A|1304","3U5H|1|5|G|1306","3U5H|1|5|G|1307","3U5H|1|5|A|1308","3U5H|1|5|U|1309","3U5H|1|5|G|1310","3U5H|1|5|G|1311","3U5H|1|5|C|1312","3U5H|1|5|G|1313","3U5H|1|5|C|1314"],"IL_4A1B_058":["4A1B|1|1|G|1221","4A1B|1|1|A|1222","4A1B|1|1|A|1224","4A1B|1|1|C|1225","4A1B|1|1|C|1226","4A1B|1|1|A|1227","4A1B|1|1|C|1228","4A1B|1|1|A|1229","4A1B|1|1|A|1230","4A1B|1|1|A|1231","4A1B|1|1|A|1232","4A1B|1|1|U|1326","4A1B|1|1|G|1327","4A1B|1|1|A|1328","4A1B|1|1|A|1330","4A1B|1|1|A|1331","4A1B|1|1|G|1333","4A1B|1|1|G|1334","4A1B|1|1|A|1335","4A1B|1|1|U|1336","4A1B|1|1|G|1337","4A1B|1|1|G|1338","4A1B|1|1|C|1339","4A1B|1|1|G|1340","4A1B|1|1|C|1341"]},"motif_id":"IL_16330.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_17109.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"09_cWW--cWW-cWW"}, {"num_instances":1,"num_nucleotides":17,"alignment":{"IL_4A1B_002":["4A1B|1|1|C|29","4A1B|1|1|U|30","4A1B|1|1|G|31","4A1B|1|1|A|32","4A1B|1|1|A|33","4A1B|1|1|C|34","4A1B|1|1|U|35","4A1B|1|1|U|36","4A1B|1|1|A|43","4A1B|1|1|U|44","4A1B|1|1|C|45","4A1B|1|1|A|46","4A1B|1|1|G|47","4A1B|1|1|U|48","4A1B|1|1|A|49","4A1B|1|1|A|50","4A1B|1|1|G|51"]},"motif_id":"IL_17682.1","chainbreak":"8","common_name":"Sarcin-ricin motif from Eukaryal LSU Helix 11","annotation":"LSU H11 Tetrahymena","bp_signature":"cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_18947.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"04_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_19202.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"11_cWW-tSH---tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_19889.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"07_cWW-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_2QBZ_002":["2QBZ|1|X|U|23","2QBZ|1|X|A|25","2QBZ|1|X|G|26","2QBZ|1|X|U|159","2QBZ|1|X|C|160","2QBZ|1|X|U|161","2QBZ|1|X|A|162"]},"motif_id":"IL_20775.1","chainbreak":"3","common_name":"tSH-inserted","annotation":"","bp_signature":"cWW-R-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1FJG_011":["1FJG|1|A|C|242","1FJG|1|A|A|243","1FJG|1|A|C|245","1FJG|1|A|A|246","1FJG|1|A|G|247","1FJG|1|A|C|277","1FJG|1|A|G|278","1FJG|1|A|A|279","1FJG|1|A|G|281","1FJG|1|A|A|282","1FJG|1|A|C|283","1FJG|1|A|G|284"]},"motif_id":"IL_21254.1","chainbreak":"5","common_name":"SSU Helix 11 (h11) IL Kink-turn T. thermophilus","annotation":"","bp_signature":"cWW-tWH-cWW-tHS-tSS-R-R-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2ZJR_008":["2ZJR|1|X|C|303","2ZJR|1|X|A|304","2ZJR|1|X|A|305","2ZJR|1|X|G|306","2ZJR|1|X|C|354","2ZJR|1|X|G|355","2ZJR|1|X|A|356","2ZJR|1|X|A|357","2ZJR|1|X|C|358","2ZJR|1|X|G|359"]},"motif_id":"IL_22579.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-L-cWW"}, {"num_instances":4,"num_nucleotides":9,"alignment":{"IL_1FJG_061":["1FJG|1|A|C|1466","1FJG|1|A|G|1467","1FJG|1|A|A|1468","1FJG|1|A|G|1469","1FJG|1|A|C|1431","1FJG|1|A|G|1432","1FJG|1|A|A|1433","1FJG|1|A|A|1434","1FJG|1|A|G|1435"],"IL_2QBG_061":["2QBG|1|B|C|1526","2QBG|1|B|G|1527","2QBG|1|B|A|1528","2QBG|1|B|G|1529","2QBG|1|B|U|1542","2QBG|1|B|G|1543","2QBG|1|B|A|1544","2QBG|1|B|A|1545","2QBG|1|B|G|1546"],"IL_2QBG_075":["2QBG|1|B|U|1864","2QBG|1|B|U|1865","2QBG|1|B|A|1866","2QBG|1|B|G|1867","2QBG|1|B|C|1874","2QBG|1|B|G|1875","2QBG|1|B|A|1876","2QBG|1|B|A|1877","2QBG|1|B|G|1878"],"IL_2ZY6_001":["2ZY6|1|A|A|7","2ZY6|1|A|U|8","2ZY6|1|A|A|9","2ZY6|1|A|G|10","2ZY6|1|A|C|25","2ZY6|1|A|G|26","2ZY6|1|A|A|27","2ZY6|1|A|G|28","2ZY6|1|A|U|29"]},"motif_id":"IL_22732.1","chainbreak":"4","common_name":"tSH-inserted-tHS","annotation":"Two Groups! Outlier has Bulged Base that H-bonds in minor groove.","bp_signature":"cWW-tSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_22858.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_23262.2","chainbreak":"4","common_name":"","annotation":"","bp_signature":"11_cWW-tSW----cWW"}, {"num_instances":2,"num_nucleotides":21,"alignment":{"IL_3Q3Z_001":["3Q3Z|1|V|G|12","3Q3Z|1|V|A|13","3Q3Z|1|V|A|14","3Q3Z|1|V|A|15","3Q3Z|1|V|U|59","3Q3Z|1|V|U|60","3Q3Z|1|V|A|61","3Q3Z|1|V|G|62","3Q3Z|1|V|U|63","3Q3Z|1|V|A|64","3Q3Z|1|V|G|65","3Q3Z|1|V|U|66","3Q3Z|1|V|G|67","3Q3Z|1|V|C|68","3Q3Z|1|V|A|69","3Q3Z|1|V|A|70","3Q3Z|1|V|C|71","3Q3Z|1|V|C|72","3Q3Z|1|V|G|73","3Q3Z|1|V|A|74","3Q3Z|1|V|C|75"],"IL_3Q3Z_003":["3Q3Z|1|A|G|12","3Q3Z|1|A|A|13","3Q3Z|1|A|A|14","3Q3Z|1|A|A|15","3Q3Z|1|A|U|59","3Q3Z|1|A|U|60","3Q3Z|1|A|A|61","3Q3Z|1|A|G|62","3Q3Z|1|A|U|63","3Q3Z|1|A|A|64","3Q3Z|1|A|G|65","3Q3Z|1|A|U|66","3Q3Z|1|A|G|67","3Q3Z|1|A|C|68","3Q3Z|1|A|A|69","3Q3Z|1|A|A|70","3Q3Z|1|A|C|71","3Q3Z|1|A|C|72","3Q3Z|1|A|G|73","3Q3Z|1|A|A|74","3Q3Z|1|A|C|75"]},"motif_id":"IL_23414.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5H_053":["3U5H|1|5|U|1167","3U5H|1|5|U|1168","3U5H|1|5|A|1169","3U5H|1|5|A|1170","3U5H|1|5|G|1171","3U5H|1|5|C|1328","3U5H|1|5|U|1329","3U5H|1|5|A|1330","3U5H|1|5|A|1332"]},"motif_id":"IL_23639.1","chainbreak":"5","common_name":"tWH-tHS-L-cWW","annotation":"Hard to tell which A is forming the tHS and which is unpaired!","bp_signature":"cWW-tWH-tHS-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24022.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"10_cWW-cSH,tWH-tWH,tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24143.1","chainbreak":"5","common_name":"Yeast 18S","annotation":"","bp_signature":"cWW-tSS-L-R-cSS-R-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24335.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"10_cWW---cWS-cWW-tSW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24476.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"11_cWW----cWW--bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24546.1","chainbreak":"5","common_name":"23S H41 IL and 16S h18 IL : Has large bulge on one side","annotation":"One motif! Forms multiple 3\u00b0 interactions. Conserved As with SE of neighboring cWW pairs","bp_signature":"10_cWW----cSH---cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24982.2","chainbreak":"5","common_name":"16S h20 IL. Prokaryal Loop E Sub-motif","annotation":"This is one family. 3UXR has A in syn which is wrong","bp_signature":"10_cWW-tSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":17,"alignment":{"IL_3U5F_064":["3U5F|1|6|A|1224","3U5F|1|6|U|1225","3U5F|1|6|A|1226","3U5F|1|6|A|1227","3U5F|1|6|G|1229","3U5F|1|6|A|1230","3U5F|1|6|U|1231","3U5F|1|6|U|1232","3U5F|1|6|G|1233","3U5F|1|6|C|1252","3U5F|1|6|U|1253","3U5F|1|6|U|1254","3U5F|1|6|G|1255","3U5F|1|6|A|1256","3U5F|1|6|U|1257","3U5F|1|6|U|1258","3U5F|1|6|U|1259"]},"motif_id":"IL_25082.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW"}, {"num_instances":2,"num_nucleotides":7,"alignment":{"IL_2ZJR_103":["2ZJR|1|Y|C|19","2ZJR|1|Y|A|20","2ZJR|1|Y|C|21","2ZJR|1|Y|G|66","2ZJR|1|Y|C|67","2ZJR|1|Y|A|68","2ZJR|1|Y|G|69"],"IL_3E5C_001":["3E5C|1|A|G|12","3E5C|1|A|A|13","3E5C|1|A|U|14","3E5C|1|A|A|27","3E5C|1|A|G|28","3E5C|1|A|G|31","3E5C|1|A|C|32"]},"motif_id":"IL_25174.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-R-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5H_080":["3U5H|1|5|U|1702","3U5H|1|5|U|1703","3U5H|1|5|A|1704","3U5H|1|5|U|1705","3U5H|1|5|C|1706","3U5H|1|5|A|1707","3U5H|1|5|U|1737","3U5H|1|5|C|1738","3U5H|1|5|U|1739","3U5H|1|5|U|1740","3U5H|1|5|A|1741","3U5H|1|5|U|1742","3U5H|1|5|G|1743"]},"motif_id":"IL_25181.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-tHW-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_25230.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"18_cWW-tSH-tHW-bif--bif-tWH-tHS-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_2AW7_012":["2AW7|1|A|G|147","2AW7|1|A|G|148","2AW7|1|A|A|149","2AW7|1|A|U|150","2AW7|1|A|A|151","2AW7|1|A|A|152","2AW7|1|A|C|153","2AW7|1|A|G|168","2AW7|1|A|C|169","2AW7|1|A|U|170","2AW7|1|A|A|171","2AW7|1|A|A|172","2AW7|1|A|A|174","2AW7|1|A|C|175"],"IL_3U5F_011":["3U5F|1|6|G|143","3U5F|1|6|U|144","3U5F|1|6|A|145","3U5F|1|6|U|146","3U5F|1|6|A|147","3U5F|1|6|A|148","3U5F|1|6|C|149","3U5F|1|6|G|165","3U5F|1|6|C|166","3U5F|1|6|U|167","3U5F|1|6|A|168","3U5F|1|6|A|169","3U5F|1|6|A|171","3U5F|1|6|C|172"]},"motif_id":"IL_25271.1","chainbreak":"7","common_name":"SSU Helix 8 (h8) IL E.c. and Yeast","annotation":"","bp_signature":"cWW-cWW-tWH-tWH-tHW-tHW-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_1Y0Q_002":["1Y0Q|1|A|U|92","1Y0Q|1|A|A|93","1Y0Q|1|A|A|94","1Y0Q|1|A|G|95","1Y0Q|1|A|C|96","1Y0Q|1|A|G|111","1Y0Q|1|A|A|112","1Y0Q|1|A|A|113","1Y0Q|1|A|A|114"]},"motif_id":"IL_25307.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tHH-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_25739.1","chainbreak":"5","common_name":"M-Box Riboswitch","annotation":"M-Box Riboswitch","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_26241.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tHW-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_022":["2AW7|1|A|G|446","2AW7|1|A|G|447","2AW7|1|A|A|448","2AW7|1|A|G|449","2AW7|1|A|G|450","2AW7|1|A|C|483","2AW7|1|A|G|484","2AW7|1|A|U|486","2AW7|1|A|A|487","2AW7|1|A|C|488"]},"motif_id":"IL_26868.1","chainbreak":"5","common_name":"","annotation":"helix 17 IL E.coli 16S rRNA","bp_signature":"cWW-tSH-tHW-tWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5H_074":["3U5H|1|5|U|1627","3U5H|1|5|C|1628","3U5H|1|5|U|1630","3U5H|1|5|C|1631","3U5H|1|5|G|1811","3U5H|1|5|G|1812","3U5H|1|5|A|1813","3U5H|1|5|A|1814","3U5H|1|5|U|1815","3U5H|1|5|A|1816"]},"motif_id":"IL_26971.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_27618.1","chainbreak":"4","common_name":"23S H73 ILa : Part of larger Motif","annotation":"Should combine with neighboring IL","bp_signature":"07_cWW-cWW-cSH-cWW"}, {"num_instances":4,"num_nucleotides":13,"alignment":{"IL_2AW7_028":["2AW7|1|A|G|515","2AW7|1|A|U|516","2AW7|1|A|G|517","2AW7|1|A|C|518","2AW7|1|A|C|519","2AW7|1|A|A|520","2AW7|1|A|G|521","2AW7|1|A|C|528","2AW7|1|A|G|529","2AW7|1|A|G|530","2AW7|1|A|U|531","2AW7|1|A|A|533","2AW7|1|A|C|536"],"IL_1FJG_021":["1FJG|1|A|G|515","1FJG|1|A|U|516","1FJG|1|A|G|517","1FJG|1|A|C|518","1FJG|1|A|C|519","1FJG|1|A|A|520","1FJG|1|A|G|521","1FJG|1|A|C|528","1FJG|1|A|G|529","1FJG|1|A|G|530","1FJG|1|A|U|531","1FJG|1|A|A|533","1FJG|1|A|C|536"],"IL_3U5F_032":["3U5F|1|6|G|562","3U5F|1|6|U|563","3U5F|1|6|G|564","3U5F|1|6|C|565","3U5F|1|6|C|566","3U5F|1|6|A|567","3U5F|1|6|G|568","3U5F|1|6|C|575","3U5F|1|6|G|576","3U5F|1|6|G|577","3U5F|1|6|U|578","3U5F|1|6|A|580","3U5F|1|6|C|583"],"IL_2XZM_031":["2XZM|1|A|G|556","2XZM|1|A|U|557","2XZM|1|A|G|558","2XZM|1|A|C|559","2XZM|1|A|C|560","2XZM|1|A|A|561","2XZM|1|A|G|562","2XZM|1|A|C|569","2XZM|1|A|G|570","2XZM|1|A|G|571","2XZM|1|A|U|572","2XZM|1|A|A|574","2XZM|1|A|C|577"]},"motif_id":"IL_28572.1","chainbreak":"7","common_name":"16S h18 kink-turn like motif","annotation":"Highly conserved, unique to 16S","bp_signature":"cWW-tWH-cSW-L-R-R-L-tHS-cWW"}, {"num_instances":2,"num_nucleotides":9,"alignment":{"IL_2XZM_076":["2XZM|1|A|C|1359","2XZM|1|A|U|1360","2XZM|1|A|A|1361","2XZM|1|A|U|1378","2XZM|1|A|G|1379","2XZM|1|A|G|1380","2XZM|1|A|A|1381","2XZM|1|A|A|1382","2XZM|1|A|G|1383"],"IL_3U5F_075":["3U5F|1|6|C|1389","3U5F|1|6|U|1390","3U5F|1|6|A|1391","3U5F|1|6|U|1407","3U5F|1|6|G|1408","3U5F|1|6|G|1409","3U5F|1|6|A|1410","3U5F|1|6|A|1411","3U5F|1|6|G|1412"]},"motif_id":"IL_28942.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-tWH-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_29610.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"04_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_29877.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"06_cWW-cWW-cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_29949.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-R-cSW-R-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_30390.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cSW-L-R-tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_30650.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"05_cWW-cWW,tSH"}, {"num_instances":3,"num_nucleotides":11,"alignment":{"IL_2XZM_010":["2XZM|1|A|U|113","2XZM|1|A|U|114","2XZM|1|A|A|115","2XZM|1|A|U|116","2XZM|1|A|U|117","2XZM|1|A|U|118","2XZM|1|A|A|286","2XZM|1|A|U|287","2XZM|1|A|C|288","2XZM|1|A|U|289","2XZM|1|A|A|290"],"IL_3U5F_010":["3U5F|1|6|U|117","3U5F|1|6|U|118","3U5F|1|6|A|119","3U5F|1|6|U|120","3U5F|1|6|U|121","3U5F|1|6|U|122","3U5F|1|6|A|295","3U5F|1|6|U|296","3U5F|1|6|U|297","3U5F|1|6|C|298","3U5F|1|6|A|299"],"IL_4A1B_014":["4A1B|1|1|G|430","4A1B|1|1|A|431","4A1B|1|1|G|432","4A1B|1|1|A|434","4A1B|1|1|A|435","4A1B|1|1|U|436","4A1B|1|1|A|646","4A1B|1|1|U|647","4A1B|1|1|G|648","4A1B|1|1|G|649","4A1B|1|1|C|650"]},"motif_id":"IL_30840.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_30979.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"08_cWW-tHW-cWW---cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31006.1","chainbreak":"6","common_name":"tSH-tHW-L-bif-cWW","annotation":"Ribozyme Ligase","bp_signature":"cWW-tSH-tHW-L-bif-cWW"}, {"num_instances":4,"num_nucleotides":5,"alignment":{"IL_3U5F_080":["3U5F|1|6|C|1636","3U5F|1|6|G|1638","3U5F|1|6|C|1764","3U5F|1|6|A|1765","3U5F|1|6|G|1767"],"IL_2AW7_060":["2AW7|1|A|C|1399","2AW7|1|A|G|1401","2AW7|1|A|C|1501","2AW7|1|A|A|1502","2AW7|1|A|G|1504"],"IL_2XZM_083":["2XZM|1|A|C|1608","2XZM|1|A|G|1610","2XZM|1|A|C|1717","2XZM|1|A|A|1718","2XZM|1|A|G|1720"],"IL_1FJG_054":["1FJG|1|A|C|1399","1FJG|1|A|G|1401","1FJG|1|A|C|1501","1FJG|1|A|A|1502","1FJG|1|A|G|1504"]},"motif_id":"IL_31066.2","chainbreak":"2","common_name":"SSU Helix 44 (h44) extension","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31555.1","chainbreak":"2","common_name":"16S decoding site","annotation":"One motif is 16S h44 decoding site. Other motif is Double sheared with bulge following.","bp_signature":"09_cWW-tSH,cWW-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2QBG_101":["2QBG|1|B|C|2652","2QBG|1|B|U|2653","2QBG|1|B|A|2654","2QBG|1|B|G|2655","2QBG|1|B|U|2656","2QBG|1|B|A|2657","2QBG|1|B|C|2658","2QBG|1|B|G|2663","2QBG|1|B|G|2664","2QBG|1|B|A|2665","2QBG|1|B|C|2666","2QBG|1|B|C|2667","2QBG|1|B|G|2668"]},"motif_id":"IL_31754.1","chainbreak":"7","common_name":"Sarcin-ricin H95 23S rRNA E.c.","annotation":"AC is annotated tHW because C is syn.","bp_signature":"cWW-cSW-tHW-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31793.1","chainbreak":"7","common_name":"Kink-turn from 16S H23","annotation":"has additional cWW AA pair","bp_signature":"14_cWW-cWW-tSH-tWH-tSS,tHS-cWW,tSS"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_32080.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-bif-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_32390.1","chainbreak":"7","common_name":"16S h19 IL and 23S H41 IL","annotation":"Large bulge loop that makes 3\u00b0 Interactions","bp_signature":"04_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_34156.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"06_cWW--cWW"}, {"num_instances":3,"num_nucleotides":13,"alignment":{"IL_1S72_043":["1S72|1|0|C|1147","1S72|1|0|C|1148","1S72|1|0|U|1149","1S72|1|0|G|1151","1S72|1|0|A|1152","1S72|1|0|C|1153","1S72|1|0|A|1154","1S72|1|0|G|1155","1S72|1|0|C|1212","1S72|1|0|C|1213","1S72|1|0|G|1214","1S72|1|0|A|1215","1S72|1|0|G|1216"],"IL_3U5H_059":["3U5H|1|5|U|1218","3U5H|1|5|C|1219","3U5H|1|5|U|1220","3U5H|1|5|G|1222","3U5H|1|5|A|1223","3U5H|1|5|C|1224","3U5H|1|5|A|1225","3U5H|1|5|G|1226","3U5H|1|5|C|1283","3U5H|1|5|C|1284","3U5H|1|5|G|1285","3U5H|1|5|A|1286","3U5H|1|5|A|1287"],"IL_2QBG_042":["2QBG|1|B|C|1043","2QBG|1|B|C|1044","2QBG|1|B|C|1045","2QBG|1|B|G|1047","2QBG|1|B|A|1048","2QBG|1|B|C|1049","2QBG|1|B|A|1050","2QBG|1|B|G|1051","2QBG|1|B|U|1108","2QBG|1|B|C|1109","2QBG|1|B|G|1110","2QBG|1|B|A|1111","2QBG|1|B|G|1112"]},"motif_id":"IL_34363.1","chainbreak":"8","common_name":"Kink-turn from 23S H42","annotation":"","bp_signature":"cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_34628.1","chainbreak":"8","common_name":"Kink-turn","annotation":"","bp_signature":"12_cWW-tSS--tSH-tHS-cWW-cWW"}, {"num_instances":3,"num_nucleotides":12,"alignment":{"IL_4A1B_077":["4A1B|1|1|U|1735","4A1B|1|1|G|1736","4A1B|1|1|A|1737","4A1B|1|1|A|1738","4A1B|1|1|A|1739","4A1B|1|1|U|1741","4A1B|1|1|A|1751","4A1B|1|1|G|1752","4A1B|1|1|G|1754","4A1B|1|1|A|1755","4A1B|1|1|U|1756","4A1B|1|1|A|1757"],"IL_3U5H_081":["3U5H|1|5|C|1711","3U5H|1|5|G|1712","3U5H|1|5|G|1713","3U5H|1|5|A|1714","3U5H|1|5|A|1715","3U5H|1|5|U|1717","3U5H|1|5|G|1727","3U5H|1|5|G|1728","3U5H|1|5|G|1730","3U5H|1|5|A|1731","3U5H|1|5|U|1732","3U5H|1|5|G|1733"],"IL_1S72_058":["1S72|1|0|U|1587","1S72|1|0|G|1588","1S72|1|0|G|1589","1S72|1|0|A|1590","1S72|1|0|A|1591","1S72|1|0|G|1592","1S72|1|0|C|1602","1S72|1|0|A|1603","1S72|1|0|G|1605","1S72|1|0|A|1606","1S72|1|0|A|1607","1S72|1|0|G|1608"]},"motif_id":"IL_37053.1","chainbreak":"6","common_name":"Kink-turn from 23S H58","annotation":"","bp_signature":"cWW-tSH-tSH-tHS-tSS-L-R-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_3U5H_082":["3U5H|1|5|A|1883","3U5H|1|5|A|1884","3U5H|1|5|U|1885","3U5H|1|5|A|1886","3U5H|1|5|A|1887","3U5H|1|5|U|1888","3U5H|1|5|G|1889","3U5H|1|5|C|2346","3U5H|1|5|U|2347","3U5H|1|5|A|2348","3U5H|1|5|U|2349"],"IL_4A1B_078":["4A1B|1|1|A|1907","4A1B|1|1|A|1908","4A1B|1|1|C|1909","4A1B|1|1|A|1910","4A1B|1|1|A|1911","4A1B|1|1|U|1912","4A1B|1|1|G|1913","4A1B|1|1|C|2341","4A1B|1|1|U|2342","4A1B|1|1|A|2343","4A1B|1|1|U|2344"]},"motif_id":"IL_37197.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3U5H_020":["3U5H|1|5|G|517","3U5H|1|5|G|518","3U5H|1|5|U|520","3U5H|1|5|A|521","3U5H|1|5|A|522","3U5H|1|5|A|523","3U5H|1|5|U|524","3U5H|1|5|C|525","3U5H|1|5|G|567","3U5H|1|5|G|568","3U5H|1|5|A|569","3U5H|1|5|A|570","3U5H|1|5|U|571","3U5H|1|5|A|572","3U5H|1|5|C|573"]},"motif_id":"IL_37347.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-cHW-L-tHW-tHW-tHW-bif-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_2XZM_047":["2XZM|1|A|U|871","2XZM|1|A|A|872","2XZM|1|A|G|873","2XZM|1|A|U|874","2XZM|1|A|C|875","2XZM|1|A|A|876","2XZM|1|A|G|877","2XZM|1|A|C|888","2XZM|1|A|U|889","2XZM|1|A|U|890","2XZM|1|A|G|892","2XZM|1|A|A|893","2XZM|1|A|U|894","2XZM|1|A|U|895","2XZM|1|A|U|896","2XZM|1|A|A|897"]},"motif_id":"IL_37715.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-L-L-tSS-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5H_056":["3U5H|1|5|C|1187","3U5H|1|5|U|1188","3U5H|1|5|C|1189","3U5H|1|5|A|1190","3U5H|1|5|A|1193","3U5H|1|5|G|1194","3U5H|1|5|C|1314","3U5H|1|5|U|1315","3U5H|1|5|A|1317","3U5H|1|5|G|1319"]},"motif_id":"IL_37990.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tWW-L-tWW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_38333.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"07_cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_38807.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"11_cWW-tWH--tHW-cSH--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39165.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"12_cWW-----cWW-cWW---cSS"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39199.1","chainbreak":"6","common_name":"Hoogsteen-edge Platform, Single-base","annotation":"","bp_signature":"05_tHS,cWW-cWW--cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39230.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"11_cWW-tWW-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":18,"alignment":{"IL_1S72_015":["1S72|1|0|G|487","1S72|1|0|U|488","1S72|1|0|A|489","1S72|1|0|C|490","1S72|1|0|C|491","1S72|1|0|G|501","1S72|1|0|A|502","1S72|1|0|G|503","1S72|1|0|G|504","1S72|1|0|C|505","1S72|1|0|G|506","1S72|1|0|A|507","1S72|1|0|A|508","1S72|1|0|A|509","1S72|1|0|A|511","1S72|1|0|G|512","1S72|1|0|A|513","1S72|1|0|C|515"]},"motif_id":"IL_39324.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39526.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"09_cWW------cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_40090.1","chainbreak":"5","common_name":"16S h34 ILa : Part of larger motif","annotation":"This should be combined with the neighboring IL into one larger motif having two triples in major groove.","bp_signature":"06_cWW-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_40239.1","chainbreak":"5","common_name":"Leadzyme Motif","annotation":"More than one motif","bp_signature":"09_cWW-bif---cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_40387.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"08_cWW-cWW-cWW--cSH"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4A1B_060":["4A1B|1|1|A|1244","4A1B|1|1|U|1245","4A1B|1|1|A|1246","4A1B|1|1|C|1247","4A1B|1|1|G|1249","4A1B|1|1|A|1250","4A1B|1|1|C|1251","4A1B|1|1|A|1252","4A1B|1|1|G|1253","4A1B|1|1|C|1310","4A1B|1|1|C|1311","4A1B|1|1|G|1312","4A1B|1|1|A|1313","4A1B|1|1|A|1314","4A1B|1|1|U|1315"]},"motif_id":"IL_40527.1","chainbreak":"9","common_name":"Kink-turn","annotation":"Extra near cWW pair in one helix.","bp_signature":"cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1FJG_037":["1FJG|1|A|G|933","1FJG|1|A|A|935","1FJG|1|A|U|1380","1FJG|1|A|U|1381","1FJG|1|A|C|1382","1FJG|1|A|C|1383","1FJG|1|A|C|1384"]},"motif_id":"IL_40845.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cSW-cSH-R-cWW"}, {"num_instances":2,"num_nucleotides":8,"alignment":{"IL_3U5H_101":["3U5H|1|5|A|2520","3U5H|1|5|U|2521","3U5H|1|5|A|2523","3U5H|1|5|A|2524","3U5H|1|5|G|2525","3U5H|1|5|C|2526","3U5H|1|5|G|2584","3U5H|1|5|U|2587"],"IL_4A1B_099":["4A1B|1|1|G|2515","4A1B|1|1|U|2516","4A1B|1|1|A|2518","4A1B|1|1|A|2519","4A1B|1|1|G|2520","4A1B|1|1|A|2521","4A1B|1|1|U|2573","4A1B|1|1|C|2576"]},"motif_id":"IL_40892.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41009.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tSS-tHW-L-R-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_4A1B_068":["4A1B|1|1|A|1585","4A1B|1|1|C|1586","4A1B|1|1|A|1588","4A1B|1|1|G|1589","4A1B|1|1|C|1604","4A1B|1|1|G|1605","4A1B|1|1|U|1606"]},"motif_id":"IL_41139.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41397.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"08_cWW-tSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41766.1","chainbreak":"4","common_name":"Tandem cWW pairs (Not AU or GC)","annotation":"","bp_signature":"08_cWW-cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1S72_036":["1S72|1|0|G|958","1S72|1|0|C|959","1S72|1|0|A|961","1S72|1|0|C|962","1S72|1|0|C|963","1S72|1|0|G|964","1S72|1|0|C|1004","1S72|1|0|A|1005","1S72|1|0|A|1006","1S72|1|0|A|1007","1S72|1|0|C|1008"]},"motif_id":"IL_41791.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_1S72_097":["1S72|1|0|U|2864","1S72|1|0|G|2865","1S72|1|0|U|2866","1S72|1|0|G|2867","1S72|1|0|C|2868","1S72|1|0|G|2869","1S72|1|0|U|2888","1S72|1|0|U|2889","1S72|1|0|A|2891","1S72|1|0|G|2892"]},"motif_id":"IL_43316.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-L-tHH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_44067.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"14_cWW-cWW-tSH-tHS-tHS--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_44540.1","chainbreak":"6","common_name":"Sugar-edge, 1-base platform, consensus tHS","annotation":"","bp_signature":"05_cSH,cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_44742.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"09_cWW-cSH---cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_45262.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"09_cWW----tHS-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_3U5H_090":["3U5H|1|5|C|2156","3U5H|1|5|G|2157","3U5H|1|5|A|2158","3U5H|1|5|G|2160","3U5H|1|5|G|2161","3U5H|1|5|U|2173","3U5H|1|5|G|2174","3U5H|1|5|U|2176","3U5H|1|5|G|2177","3U5H|1|5|A|2178","3U5H|1|5|G|2180"],"IL_4A1B_085":["4A1B|1|1|U|2152","4A1B|1|1|G|2153","4A1B|1|1|A|2154","4A1B|1|1|G|2156","4A1B|1|1|G|2157","4A1B|1|1|U|2168","4A1B|1|1|G|2169","4A1B|1|1|U|2171","4A1B|1|1|G|2172","4A1B|1|1|A|2173","4A1B|1|1|A|2175"]},"motif_id":"IL_45794.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-tWW-tWW-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5H_060":["3U5H|1|5|G|1234","3U5H|1|5|U|1235","3U5H|1|5|G|1237","3U5H|1|5|C|1238","3U5H|1|5|G|1250","3U5H|1|5|A|1251","3U5H|1|5|A|1252","3U5H|1|5|U|1253","3U5H|1|5|C|1254"]},"motif_id":"IL_46306.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW-cWW"}, {"num_instances":2,"num_nucleotides":13,"alignment":{"IL_1VBY_001":["1VBY|1|B|C|107","1VBY|1|B|A|108","1VBY|1|B|U|109","1VBY|1|B|G|110","1VBY|1|B|G|111","1VBY|1|B|U|112","1VBY|1|B|C|113","1VBY|1|B|C|114","1VBY|1|B|C|115","1VBY|1|B|A|116","1VBY|1|B|G|117","1VBY|1|B|C|130","1VBY|1|B|G|131"],"IL_3NKB_001":["3NKB|1|A|C|8","3NKB|1|A|A|9","3NKB|1|B|G|10","3NKB|1|B|G|11","3NKB|1|B|U|12","3NKB|1|B|C|13","3NKB|1|B|C|14","3NKB|1|B|G|15","3NKB|1|B|C|16","3NKB|1|B|A|17","3NKB|1|B|G|18","3NKB|1|B|C|30","3NKB|1|B|G|31"]},"motif_id":"IL_46435.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_47174.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"06_cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_47247.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"12_cWW----tWH-----cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_47444.1","chainbreak":"11","common_name":"SRP Loop E-like motif","annotation":"Found in Signal Recognition Particle (SRP) RNA","bp_signature":"12_cWW-tWH,tSH-tHW-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2AW7_056":["2AW7|1|A|U|1247","2AW7|1|A|A|1248","2AW7|1|A|C|1249","2AW7|1|A|A|1250","2AW7|1|A|A|1251","2AW7|1|A|A|1252","2AW7|1|A|G|1253","2AW7|1|A|C|1284","2AW7|1|A|A|1285","2AW7|1|A|A|1287","2AW7|1|A|A|1288","2AW7|1|A|A|1289","2AW7|1|A|G|1290"]},"motif_id":"IL_47687.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tWH-tWH-tWH-L-R-L-tWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_48187.1","chainbreak":"7","common_name":"Single sheared with bulged bases","annotation":"Single sheared with 1 to 3 bulged bases. One motif!","bp_signature":"06_cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_48650.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"18_cWW-tSH-tSS-cWW,tSS------tWH-tWH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_49111.1","chainbreak":"7","common_name":"tHS tHH bulge with S-turn","annotation":"Two motifs. 2nd is decoding site. Separate","bp_signature":"08_cWW--tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_49493.1","chainbreak":"7","common_name":"Sarcin-ricin H95 23S rRNA H.m.","annotation":"All are very good Sarcin-Ricin motifs","bp_signature":"13_cWW-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_1FJG_017":["1FJG|1|A|G|409","1FJG|1|A|G|410","1FJG|1|A|A|411","1FJG|1|A|G|413","1FJG|1|A|A|414","1FJG|1|A|A|415","1FJG|1|A|G|416","1FJG|1|A|U|427","1FJG|1|A|G|428","1FJG|1|A|U|429","1FJG|1|A|A|430","1FJG|1|A|A|431","1FJG|1|A|A|432","1FJG|1|A|C|433"],"IL_2AW7_020":["2AW7|1|A|U|409","2AW7|1|A|G|410","2AW7|1|A|A|411","2AW7|1|A|G|413","2AW7|1|A|A|414","2AW7|1|A|A|415","2AW7|1|A|G|416","2AW7|1|A|U|427","2AW7|1|A|G|428","2AW7|1|A|U|429","2AW7|1|A|A|430","2AW7|1|A|A|431","2AW7|1|A|A|432","2AW7|1|A|G|433"]},"motif_id":"IL_50521.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-cWH-tWH-tSS-tHW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_50767.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"06_cWW-cWW"}, {"num_instances":3,"num_nucleotides":9,"alignment":{"IL_1J2B_001":["1J2B|1|C|G|943","1J2B|1|C|G|944","1J2B|1|C|A|945","1J2B|1|C|G|946","1J2B|1|C|G|947","1J2B|1|C|C|926","1J2B|1|C|G|927","1J2B|1|C|C|928","1J2B|1|C|C|929"],"IL_1MFQ_001":["1MFQ|1|A|C|230","1MFQ|1|A|A|231","1MFQ|1|A|G|232","1MFQ|1|A|U|233","1MFQ|1|A|A|234","1MFQ|1|A|U|117","1MFQ|1|A|A|118","1MFQ|1|A|A|119","1MFQ|1|A|G|120"],"IL_1U6B_004":["1U6B|1|B|C|96","1U6B|1|B|A|97","1U6B|1|B|A|98","1U6B|1|B|G|99","1U6B|1|B|C|100","1U6B|1|B|G|119","1U6B|1|B|A|120","1U6B|1|B|A|121","1U6B|1|B|G|122"]},"motif_id":"IL_52173.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2QBG_106":["2QBG|1|B|C|2806","2QBG|1|B|U|2807","2QBG|1|B|G|2808","2QBG|1|B|A|2809","2QBG|1|B|A|2810","2QBG|1|B|G|2811","2QBG|1|B|C|2889","2QBG|1|B|G|2890","2QBG|1|B|U|2891","2QBG|1|B|G|2892"]},"motif_id":"IL_52509.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_52752.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_1FJG_049":["1FJG|1|A|U|1247","1FJG|1|A|A|1248","1FJG|1|A|C|1249","1FJG|1|A|A|1250","1FJG|1|A|A|1251","1FJG|1|A|A|1252","1FJG|1|A|G|1253","1FJG|1|A|C|1284","1FJG|1|A|A|1285","1FJG|1|A|A|1286","1FJG|1|A|A|1287","1FJG|1|A|A|1288","1FJG|1|A|A|1289","1FJG|1|A|G|1290"],"IL_3U5F_076":["3U5F|1|6|G|1480","3U5F|1|6|C|1482","3U5F|1|6|A|1483","3U5F|1|6|G|1484","3U5F|1|6|C|1485","3U5F|1|6|G|1486","3U5F|1|6|A|1487","3U5F|1|6|U|1519","3U5F|1|6|U|1520","3U5F|1|6|U|1522","3U5F|1|6|A|1524","3U5F|1|6|A|1525","3U5F|1|6|A|1526","3U5F|1|6|C|1527"]},"motif_id":"IL_52940.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-L-L-L-tWW-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_2QBG_028":["2QBG|1|B|A|844","2QBG|1|B|A|845","2QBG|1|B|U|846","2QBG|1|B|U|847","2QBG|1|B|C|848","2QBG|1|B|G|930","2QBG|1|B|U|932","2QBG|1|B|A|933","2QBG|1|B|U|934"]},"motif_id":"IL_52958.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5H_023":["3U5H|1|5|G|680","3U5H|1|5|U|681","3U5H|1|5|U|682","3U5H|1|5|U|683","3U5H|1|5|G|684","3U5H|1|5|C|696","3U5H|1|5|A|697","3U5H|1|5|U|698","3U5H|1|5|A|699","3U5H|1|5|C|700"]},"motif_id":"IL_53323.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_53635.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"11_cWW-tHW-tHW-tWW-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_2QBG_014":["2QBG|1|B|C|274","2QBG|1|B|C|275","2QBG|1|B|U|276","2QBG|1|B|A|278","2QBG|1|B|A|279","2QBG|1|B|U|280","2QBG|1|B|C|281","2QBG|1|B|G|359","2QBG|1|B|U|360","2QBG|1|B|G|361","2QBG|1|B|A|362","2QBG|1|B|G|363"]},"motif_id":"IL_53988.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cSW-L-L-tHS-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_54307.1","chainbreak":"7","common_name":"C-loop","annotation":"","bp_signature":"07_tHW,cWW-cWW,cSW-tSW-cSH"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2Y9B_002":["2Y9B|1|V|U|805","2Y9B|1|V|G|806","2Y9B|1|V|A|807","2Y9B|1|V|C|808","2Y9B|1|V|G|821","2Y9B|1|V|G|822","2Y9B|1|V|C|823","2Y9B|1|V|A|824"]},"motif_id":"IL_54450.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_3NPB_006":["3NPB|1|A|U|52","3NPB|1|A|G|53","3NPB|1|A|A|55","3NPB|1|A|A|56","3NPB|1|A|U|69","3NPB|1|A|G|70","3NPB|1|A|A|71"]},"motif_id":"IL_54576.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-bif-L-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_3U5H_005":["3U5H|1|5|C|31","3U5H|1|5|U|32","3U5H|1|5|G|33","3U5H|1|5|A|34","3U5H|1|5|A|35","3U5H|1|5|C|36","3U5H|1|5|U|37","3U5H|1|5|U|38","3U5H|1|5|A|45","3U5H|1|5|U|46","3U5H|1|5|C|47","3U5H|1|5|A|48","3U5H|1|5|U|50","3U5H|1|5|A|51","3U5H|1|5|A|52","3U5H|1|5|G|53"]},"motif_id":"IL_54954.1","chainbreak":"8","common_name":"Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.","annotation":"","bp_signature":"cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_55167.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"09_cWW--cWW---cSH"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_4A1B_057":["4A1B|1|1|C|1214","4A1B|1|1|U|1215","4A1B|1|1|C|1216","4A1B|1|1|A|1217","4A1B|1|1|A|1220","4A1B|1|1|G|1221","4A1B|1|1|C|1341","4A1B|1|1|U|1342","4A1B|1|1|A|1344","4A1B|1|1|G|1346"],"IL_3Q1Q_008":["3Q1Q|1|B|U|253","3Q1Q|1|B|A|254","3Q1Q|1|B|U|255","3Q1Q|1|B|U|256","3Q1Q|1|B|C|257","3Q1Q|1|B|C|258","3Q1Q|1|B|G|236","3Q1Q|1|B|G|237","3Q1Q|1|B|U|239","3Q1Q|1|B|G|240"]},"motif_id":"IL_55287.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2QBG_056":["2QBG|1|B|C|1437","2QBG|1|B|U|1438","2QBG|1|B|A|1439","2QBG|1|B|U|1440","2QBG|1|B|A|1551","2QBG|1|B|A|1552","2QBG|1|B|A|1553","2QBG|1|B|G|1555"]},"motif_id":"IL_55649.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tWH-L-R-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_2ZJR_037":["2ZJR|1|X|C|1054","2ZJR|1|X|A|1055","2ZJR|1|X|U|1056","2ZJR|1|X|G|1058","2ZJR|1|X|A|1059","2ZJR|1|X|C|1060","2ZJR|1|X|A|1061","2ZJR|1|X|G|1062","2ZJR|1|X|C|1063","2ZJR|1|X|G|1118","2ZJR|1|X|U|1119","2ZJR|1|X|C|1120","2ZJR|1|X|G|1121","2ZJR|1|X|A|1122","2ZJR|1|X|G|1123"]},"motif_id":"IL_55934.1","chainbreak":"9","common_name":"kink-turn-like","annotation":"from D. radiodurans 23S","bp_signature":"cWW-L-L-tSH-L-R-bif-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_55938.1","chainbreak":"9","common_name":"23S H89 IL1 and others","annotation":"In 1S72 C2493 is part of motif. In 3UXR G2458 is part of motif. This group is heterogeneous. More than one motif here.","bp_signature":"07_cWW-cWW-cWW--cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_56465.1","chainbreak":"9","common_name":"Single, unpaired intercalated base, consensus A","annotation":"","bp_signature":"05_cWW--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_57785.4","chainbreak":"9","common_name":"","annotation":"","bp_signature":"08_cWW-cSW--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_57870.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"14_cWW-tSS,cWH-cWH-cWW--tWH--cSS"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_58291.1","chainbreak":"9","common_name":"Recurrent Sub-motif found in junctions","annotation":"IL_1S72_008 is part of complex K-turn. IL_3UXR_047 is part of 4WJ.","bp_signature":"06_cWW---cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_58586.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"06_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_59016.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"08_cWW-cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5H_079":["3U5H|1|5|U|1694","3U5H|1|5|U|1695","3U5H|1|5|A|1696","3U5H|1|5|A|1697","3U5H|1|5|C|1698","3U5H|1|5|G|1747","3U5H|1|5|G|1748","3U5H|1|5|A|1749","3U5H|1|5|A|1750","3U5H|1|5|A|1752"]},"motif_id":"IL_59529.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tWH-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_61723.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-tHW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_3KTW_003":["3KTW|1|C|G|193","3KTW|1|C|G|194","3KTW|1|C|G|195","3KTW|1|C|A|196","3KTW|1|C|A|197","3KTW|1|C|C|198","3KTW|1|C|C|199","3KTW|1|C|G|224","3KTW|1|C|U|225","3KTW|1|C|G|226","3KTW|1|C|C|227"]},"motif_id":"IL_61730.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-tHW-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62352.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cSH-tWH-cSH-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62499.2","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62661.1","chainbreak":"7","common_name":"Double-sheared with stacked As","annotation":"#1 and #2 belong together","bp_signature":"10_cWW-tSH--tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62718.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"11_cWW-tSH-tHW-tHH-cWW---cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_63741.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"09_cWW---tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1FJG_019":["1FJG|1|A|G|450","1FJG|1|A|A|451","1FJG|1|A|A|452","1FJG|1|A|A|453","1FJG|1|A|C|454","1FJG|1|A|C|455","1FJG|1|A|G|477","1FJG|1|A|A|478","1FJG|1|A|C|479","1FJG|1|A|U|480","1FJG|1|A|G|481","1FJG|1|A|A|482","1FJG|1|A|C|483"]},"motif_id":"IL_63952.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-tHW-tHW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_64184.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"07_cWW--tSS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_65553.1","chainbreak":"6","common_name":"Kink-turn","annotation":"","bp_signature":"12_cWW-tSS--tSH-tHW,tHS-tHS,cWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2XZM_063":["2XZM|1|A|A|1202","2XZM|1|A|U|1203","2XZM|1|A|U|1204","2XZM|1|A|G|1205","2XZM|1|A|C|1224","2XZM|1|A|U|1225","2XZM|1|A|U|1226","2XZM|1|A|G|1227","2XZM|1|A|A|1228","2XZM|1|A|U|1229"]},"motif_id":"IL_65788.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_65978.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"11_cWW-tSH-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2AW7_033":["2AW7|1|A|U|605","2AW7|1|A|G|606","2AW7|1|A|A|607","2AW7|1|A|A|608","2AW7|1|A|A|609","2AW7|1|A|U|610","2AW7|1|A|C|611","2AW7|1|A|C|612","2AW7|1|A|G|628","2AW7|1|A|A|629","2AW7|1|A|A|630","2AW7|1|A|C|631","2AW7|1|A|G|633"]},"motif_id":"IL_66744.1","chainbreak":"8","common_name":"SSU Helix 21 (h21) IL2 E.coli","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_67117.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"11_cWW--tSH-cSS-cWW,tSS"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_67697.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"20_cWW-tWW--tHH-tHS-cWW---------tWH"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_3U5F_021":["3U5F|1|6|G|363","3U5F|1|6|G|364","3U5F|1|6|G|365","3U5F|1|6|C|376","3U5F|1|6|G|377","3U5F|1|6|A|378","3U5F|1|6|U|379","3U5F|1|6|C|381"]},"motif_id":"IL_67735.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-R-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68736.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"07_cWW-tSH--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68827.1","chainbreak":"8","common_name":"Reverse Kink-Turn","annotation":"Group I Intron","bp_signature":"cWW-tSH-tHH-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68939.1","chainbreak":"8","common_name":"Kink-turn from U4","annotation":"Many copies of same structure. One motif! Combine with other kink-turns?","bp_signature":"10_cWW-tSS--tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_69009.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"08_cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_69124.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"07_cWW--cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_70237.2","chainbreak":"8","common_name":"","annotation":"","bp_signature":"09_cWW--cWS-cWW-tSW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_2XZM_046":["2XZM|1|A|G|863","2XZM|1|A|U|864","2XZM|1|A|A|865","2XZM|1|A|U|866","2XZM|1|A|U|867","2XZM|1|A|A|901","2XZM|1|A|G|902","2XZM|1|A|G|903","2XZM|1|A|A|904","2XZM|1|A|C|905"],"IL_3U5F_003":["3U5F|1|6|U|37","3U5F|1|6|C|38","3U5F|1|6|A|39","3U5F|1|6|A|40","3U5F|1|6|A|41","3U5F|1|6|U|466","3U5F|1|6|G|467","3U5F|1|6|C|469","3U5F|1|6|A|470","3U5F|1|6|A|471"]},"motif_id":"IL_70280.1","chainbreak":"8","common_name":"Double sheared with wobble cWW.","annotation":"Two different groups","bp_signature":"cWW-cWW-L-R-R-L-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_3U5H_040":["3U5H|1|5|G|991","3U5H|1|5|A|992","3U5H|1|5|G|993","3U5H|1|5|G|994","3U5H|1|5|U|995","3U5H|1|5|A|996","3U5H|1|5|A|997","3U5H|1|5|U|1052","3U5H|1|5|A|1053","3U5H|1|5|A|1054","3U5H|1|5|A|1055","3U5H|1|5|U|1056","3U5H|1|5|A|1057","3U5H|1|5|U|1058"]},"motif_id":"IL_71685.1","chainbreak":"7","common_name":"Sarcin-like with an intercalated basepair","annotation":"","bp_signature":"cWW-cWW-bif-R-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3Q1Q_002":["3Q1Q|1|B|U|61","3Q1Q|1|B|G|62","3Q1Q|1|B|G|63","3Q1Q|1|B|A|64","3Q1Q|1|B|G|65","3Q1Q|1|B|C|66","3Q1Q|1|B|G|67","3Q1Q|1|B|G|68","3Q1Q|1|B|U|216","3Q1Q|1|B|G|217"]},"motif_id":"IL_71942.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_72158.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"12_cWW-tSH-tSH-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73000.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"06_cWW-cWW,cSW-cSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73663.1","chainbreak":"8","common_name":"1 or 2 bulged bases","annotation":"","bp_signature":"04_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_74876.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-tWH-L-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_75328.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cSS-tSS-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3R4F_001":["3R4F|1|A|G|14","3R4F|1|A|G|15","3R4F|1|A|A|16","3R4F|1|A|A|17","3R4F|1|A|A|18","3R4F|1|A|C|19","3R4F|1|A|C|20","3R4F|1|A|C|21","3R4F|1|A|G|34","3R4F|1|A|C|35"]},"motif_id":"IL_75415.1","chainbreak":"8","common_name":"Pseudo-knot forming internal loop","annotation":"IL that forms PK with HL. From viral DNA packaging motor","bp_signature":"cWW-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_75449.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"06_cWW-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_2ZJR_073":["2ZJR|1|X|C|1917","2ZJR|1|X|G|1918","2ZJR|1|X|A|1919","2ZJR|1|X|A|1920","2ZJR|1|X|U|1922","2ZJR|1|X|U|1923","2ZJR|1|X|C|1924","2ZJR|1|X|C|1925","2ZJR|1|X|U|1926","2ZJR|1|X|G|1928","2ZJR|1|X|C|1944","2ZJR|1|X|C|1945","2ZJR|1|X|U|1946","2ZJR|1|X|G|1947"]},"motif_id":"IL_75688.1","chainbreak":"10","common_name":"Part of Helix 71 (H71) junction in 23S of D.r.","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-cSH-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_76095.2","chainbreak":"10","common_name":"","annotation":"","bp_signature":"18_cWW-cWW-tSH-tHW-tHW-tWH--cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_76263.1","chainbreak":"10","common_name":"","annotation":"","bp_signature":"cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3U5H_006":["3U5H|1|5|C|82","3U5H|1|5|U|83","3U5H|1|5|U|84","3U5H|1|5|A|85","3U5H|1|5|G|86","3U5H|1|5|U|87","3U5H|1|5|A|88","3U5H|1|5|A|89","3U5H|1|5|U|97","3U5H|1|5|G|98","3U5H|1|5|A|99","3U5H|1|5|A|100","3U5H|1|5|G|101","3U5H|1|5|C|102","3U5H|1|5|G|103"]},"motif_id":"IL_76486.1","chainbreak":"8","common_name":"Sarcin-ricin motif with syn G","annotation":"Has Syn G resulting in UG tSW instead of tSH.","bp_signature":"cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_76831.1","chainbreak":"8","common_name":"REV element IL with syn G","annotation":"More than one motif","bp_signature":"08_cWW-cWW-cWH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_77014.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tWH-cSH-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_78157.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"06_cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_78732.2","chainbreak":"8","common_name":"Double S-turn motif","annotation":"Two different groups. Double S-turn is from TPP riboswitch","bp_signature":"08_cWW-cWH-tWS-cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_1DUH_003":["1DUH|1|A|C|52","1DUH|1|A|G|53","1DUH|1|A|G|54","1DUH|1|A|A|55","1DUH|1|A|A|56","1DUH|1|A|G|57","1DUH|1|A|C|52||||4_555","1DUH|1|A|G|53||||4_555","1DUH|1|A|G|54||||4_555","1DUH|1|A|A|55||||4_555","1DUH|1|A|A|56||||4_555","1DUH|1|A|G|57||||4_555"],"IL_3FTF_001":["3FTF|1|D|G|1515","3FTF|1|D|G|1516","3FTF|1|D|G|1517","3FTF|1|D|A|1518","3FTF|1|D|A|1519","3FTF|1|D|C|1520","3FTF|1|C|G|1515","3FTF|1|C|G|1516","3FTF|1|C|G|1517","3FTF|1|C|A|1518","3FTF|1|C|A|1519","3FTF|1|C|C|1520"]},"motif_id":"IL_78744.1","chainbreak":"6","common_name":"Quadruple Sheared (tSH-tSH-tHS-tHS)","annotation":"","bp_signature":"cWW-tSH-tSH-tHS-tHS-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_3NPB_005":["3NPB|1|A|C|49","3NPB|1|A|G|50","3NPB|1|A|C|73","3NPB|1|A|A|74","3NPB|1|A|A|75","3NPB|1|A|G|76"]},"motif_id":"IL_78809.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-bif-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_79083.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"11_cWW-tSH---tHH-cWW"}, {"num_instances":3,"num_nucleotides":12,"alignment":{"IL_2AW7_037":["2AW7|1|A|A|673","2AW7|1|A|G|674","2AW7|1|A|A|675","2AW7|1|A|A|676","2AW7|1|A|U|677","2AW7|1|A|U|678","2AW7|1|A|A|712","2AW7|1|A|G|713","2AW7|1|A|G|714","2AW7|1|A|A|715","2AW7|1|A|A|716","2AW7|1|A|U|717"],"IL_1FJG_030":["1FJG|1|A|G|673","1FJG|1|A|G|674","1FJG|1|A|A|675","1FJG|1|A|A|676","1FJG|1|A|U|677","1FJG|1|A|U|678","1FJG|1|A|A|712","1FJG|1|A|G|713","1FJG|1|A|G|714","1FJG|1|A|A|715","1FJG|1|A|A|716","1FJG|1|A|C|717"],"IL_4A1B_025":["4A1B|1|1|G|562","4A1B|1|1|G|563","4A1B|1|1|U|566","4A1B|1|1|C|567","4A1B|1|1|A|568","4A1B|1|1|C|569","4A1B|1|1|G|600","4A1B|1|1|A|601","4A1B|1|1|A|602","4A1B|1|1|A|603","4A1B|1|1|A|604","4A1B|1|1|C|605"]},"motif_id":"IL_79955.2","chainbreak":"6","common_name":"SSU Helix (23) h23 IL1","annotation":"","bp_signature":"cWW-cWW-cWW-cWW-cSW-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_4A1B_074":["4A1B|1|1|U|1718","4A1B|1|1|U|1719","4A1B|1|1|A|1720","4A1B|1|1|A|1721","4A1B|1|1|C|1722","4A1B|1|1|G|1772","4A1B|1|1|G|1773","4A1B|1|1|C|1774","4A1B|1|1|A|1775","4A1B|1|1|A|1777"],"IL_1S72_056":["1S72|1|0|C|1570","1S72|1|0|G|1571","1S72|1|0|A|1572","1S72|1|0|A|1573","1S72|1|0|C|1574","1S72|1|0|G|1622","1S72|1|0|C|1623","1S72|1|0|A|1624","1S72|1|0|A|1626","1S72|1|0|G|1627"]},"motif_id":"IL_80093.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_80179.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"05_cWW--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_80494.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"12_cWW-tWH--tHS-bif-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1X8W_008":["1X8W|1|A|G|313","1X8W|1|A|A|314","1X8W|1|A|C|315","1X8W|1|A|G|406","1X8W|1|A|A|407","1X8W|1|A|G|408","1X8W|1|A|U|409","1X8W|1|A|A|410","1X8W|1|A|C|411","1X8W|1|A|U|412","1X8W|1|A|C|413"]},"motif_id":"IL_80505.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2QBG_100":["2QBG|1|B|C|2636","2QBG|1|B|U|2637","2QBG|1|B|G|2638","2QBG|1|B|A|2639","2QBG|1|B|G|2640","2QBG|1|B|C|2774","2QBG|1|B|G|2775","2QBG|1|B|A|2776","2QBG|1|B|G|2777","2QBG|1|B|A|2778","2QBG|1|B|U|2779","2QBG|1|B|A|2781","2QBG|1|B|G|2782"]},"motif_id":"IL_80652.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-R-cSH-tWH-tSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5F_039":["3U5F|1|6|C|708","3U5F|1|6|C|709","3U5F|1|6|U|710","3U5F|1|6|U|711","3U5F|1|6|G|712","3U5F|1|6|C|726","3U5F|1|6|U|727","3U5F|1|6|U|728","3U5F|1|6|G|729","3U5F|1|6|G|730"]},"motif_id":"IL_81398.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW-cWW-cWW"}, {"num_instances":2,"num_nucleotides":5,"alignment":{"IL_2QBG_059":["2QBG|1|B|U|1481","2QBG|1|B|G|1482","2QBG|1|B|C|1507","2QBG|1|B|A|1508","2QBG|1|B|G|1510"],"IL_2ZJR_058":["2ZJR|1|X|C|1497","2ZJR|1|X|G|1498","2ZJR|1|X|C|1522","2ZJR|1|X|A|1523","2ZJR|1|X|G|1527"]},"motif_id":"IL_81441.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_3U5F_042":["3U5F|1|6|G|751","3U5F|1|6|A|752","3U5F|1|6|A|753","3U5F|1|6|A|754","3U5F|1|6|A|755","3U5F|1|6|A|756","3U5F|1|6|A|757","3U5F|1|6|U|758","3U5F|1|6|U|759","3U5F|1|6|A|791","3U5F|1|6|U|792","3U5F|1|6|A|793","3U5F|1|6|U|795","3U5F|1|6|A|796","3U5F|1|6|G|797","3U5F|1|6|C|798"]},"motif_id":"IL_82113.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW"}, {"num_instances":5,"num_nucleotides":14,"alignment":{"IL_4A1B_090":["4A1B|1|1|U|2206","4A1B|1|1|C|2207","4A1B|1|1|A|2208","4A1B|1|1|A|2209","4A1B|1|1|A|2210","4A1B|1|1|G|2211","4A1B|1|1|U|2212","4A1B|1|1|A|2223","4A1B|1|1|A|2224","4A1B|1|1|C|2225","4A1B|1|1|C|2226","4A1B|1|1|A|2227","4A1B|1|1|A|2228","4A1B|1|1|G|2229"],"IL_1S72_069":["1S72|1|0|U|1907","1S72|1|0|G|1908","1S72|1|0|A|1909","1S72|1|0|A|1910","1S72|1|0|C|1911","1S72|1|0|A|1912","1S72|1|0|C|1913","1S72|1|0|G|1926","1S72|1|0|A|1927","1S72|1|0|C|1928","1S72|1|0|G|1929","1S72|1|0|A|1930","1S72|1|0|A|1931","1S72|1|0|G|1932"],"IL_2QBZ_005":["2QBZ|1|X|A|60","2QBZ|1|X|A|61","2QBZ|1|X|A|62","2QBZ|1|X|A|63","2QBZ|1|X|A|64","2QBZ|1|X|U|65","2QBZ|1|X|G|66","2QBZ|1|X|C|75","2QBZ|1|X|G|76","2QBZ|1|X|C|77","2QBZ|1|X|C|78","2QBZ|1|X|A|79","2QBZ|1|X|A|80","2QBZ|1|X|U|81"],"IL_2XZM_011":["2XZM|1|A|G|159","2XZM|1|A|C|160","2XZM|1|A|U|161","2XZM|1|A|A|162","2XZM|1|A|A|163","2XZM|1|A|A|165","2XZM|1|A|C|166","2XZM|1|A|G|137","2XZM|1|A|G|138","2XZM|1|A|A|139","2XZM|1|A|U|140","2XZM|1|A|A|141","2XZM|1|A|A|142","2XZM|1|A|C|143"],"IL_2OIU_002":["2OIU|1|P|C|21","2OIU|1|P|G|22","2OIU|1|P|A|23","2OIU|1|P|C|24","2OIU|1|P|C|25","2OIU|1|P|A|26","2OIU|1|P|G|27","2OIU|1|P|C|34","2OIU|1|P|U|35","2OIU|1|P|C|36","2OIU|1|P|U|37","2OIU|1|P|U|38","2OIU|1|P|A|39","2OIU|1|P|G|40"]},"motif_id":"IL_82188.1","chainbreak":"7","common_name":"LSU H68 IL from H.m.","annotation":"More than one motif","bp_signature":"cWW-tSH-L-R-R-R-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82367.4","chainbreak":"7","common_name":"","annotation":"","bp_signature":"07_cWW--cWW"}, {"num_instances":3,"num_nucleotides":10,"alignment":{"IL_2GDI_006":["2GDI|1|Y|U|20","2GDI|1|Y|G|21","2GDI|1|Y|C|38","2GDI|1|Y|U|39","2GDI|1|Y|G|40","2GDI|1|Y|A|41","2GDI|1|Y|G|42","2GDI|1|Y|A|43","2GDI|1|Y|A|44","2GDI|1|Y|A|45"],"IL_2GDI_002":["2GDI|1|X|U|20","2GDI|1|X|G|21","2GDI|1|X|C|38","2GDI|1|X|U|39","2GDI|1|X|G|40","2GDI|1|X|A|41","2GDI|1|X|G|42","2GDI|1|X|A|43","2GDI|1|X|A|44","2GDI|1|X|A|45"],"IL_2HOJ_002":["2HOJ|1|A|U|20","2HOJ|1|A|G|21","2HOJ|1|A|C|38","2HOJ|1|A|U|39","2HOJ|1|A|G|40","2HOJ|1|A|A|41","2HOJ|1|A|G|42","2HOJ|1|A|A|43","2HOJ|1|A|A|44","2HOJ|1|A|A|45"]},"motif_id":"IL_82563.1","chainbreak":"2","common_name":"Thi-box riboswitch T-loop","annotation":"This T-loop is actually an IL not an HL! It binds TPP","bp_signature":"cWW-R-tWH-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1Y0Q_001":["1Y0Q|1|A|G|53","1Y0Q|1|A|G|54","1Y0Q|1|A|A|55","1Y0Q|1|A|A|56","1Y0Q|1|A|C|57","1Y0Q|1|A|A|58","1Y0Q|1|A|C|59","1Y0Q|1|A|G|80","1Y0Q|1|A|C|81","1Y0Q|1|A|A|82","1Y0Q|1|A|A|83","1Y0Q|1|A|U|84","1Y0Q|1|A|C|85"]},"motif_id":"IL_82650.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWS-tSH-tHS-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82831.1","chainbreak":"7","common_name":"Kink-turn from 16S H23","annotation":"","bp_signature":"12_cWW-tSH--tHS-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1FJG_048":["1FJG|1|A|C|1158","1FJG|1|A|U|1159","1FJG|1|A|G|1160","1FJG|1|A|C|1161","1FJG|1|A|G|1175","1FJG|1|A|A|1176","1FJG|1|A|G|1177","1FJG|1|A|G|1178","1FJG|1|A|A|1179","1FJG|1|A|A|1180","1FJG|1|A|G|1181"]},"motif_id":"IL_83250.1","chainbreak":"4","common_name":"16S h40 3WJ T.th.","annotation":"","bp_signature":"cWW-tWH-R-R-R-cSH-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_83451.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"09_cWW-cWW-cSW-cWW--cSH"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_2AW7_009":["2AW7|1|A|G|128","2AW7|1|A|A|129","2AW7|1|A|A|130","2AW7|1|A|A|131","2AW7|1|A|U|231","2AW7|1|A|G|232","2AW7|1|A|C|233"]},"motif_id":"IL_83920.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_4A1B_043":["4A1B|1|1|A|1001","4A1B|1|1|G|1003","4A1B|1|1|A|1005","4A1B|1|1|G|1007","4A1B|1|1|C|1129","4A1B|1|1|U|1132"]},"motif_id":"IL_85510.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85647.1","chainbreak":"4","common_name":"Sarcin-ricin","annotation":"","bp_signature":"15_cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_1FJG_045":["1FJG|1|A|G|1124","1FJG|1|A|U|1126","1FJG|1|A|G|1127","1FJG|1|A|C|1145","1FJG|1|A|A|1146","1FJG|1|A|C|1147","1FJG|1|A|U|1148","1FJG|1|A|C|1149"]},"motif_id":"IL_85805.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":4,"alignment":{"IL_1S72_073":["1S72|1|0|A|2095","1S72|1|0|G|2097","1S72|1|0|C|2647","1S72|1|0|U|2650"]},"motif_id":"IL_86059.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_86357.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"06_cWW-tWW-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_1S72_013":["1S72|1|0|C|290","1S72|1|0|C|291","1S72|1|0|G|292","1S72|1|0|A|293","1S72|1|0|C|294","1S72|1|0|C|295","1S72|1|0|G|296","1S72|1|0|C|355","1S72|1|0|C|356","1S72|1|0|A|357","1S72|1|0|G|358","1S72|1|0|U|359","1S72|1|0|A|360","1S72|1|0|C|361","1S72|1|0|G|362"]},"motif_id":"IL_86981.1","chainbreak":"7","common_name":"Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.","annotation":"This loop is unique to Archaeal 23S rRNA","bp_signature":"cWW-bif-tSH-tHW-cSH-tHH-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87173.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87904.1","chainbreak":"7","common_name":"Triple sheared","annotation":"","bp_signature":"10_cWW-tSH-tHS-tHS-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4A1B_045":["4A1B|1|1|A|1018","4A1B|1|1|G|1019","4A1B|1|1|G|1020","4A1B|1|1|U|1021","4A1B|1|1|A|1022","4A1B|1|1|A|1023","4A1B|1|1|A|1024","4A1B|1|1|U|1076","4A1B|1|1|U|1077","4A1B|1|1|U|1078","4A1B|1|1|A|1079","4A1B|1|1|A|1080","4A1B|1|1|A|1081","4A1B|1|1|U|1082","4A1B|1|1|U|1083"]},"motif_id":"IL_88367.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_2AW7_053":["2AW7|1|A|G|1124","2AW7|1|A|U|1125","2AW7|1|A|U|1126","2AW7|1|A|G|1127","2AW7|1|A|C|1128","2AW7|1|A|G|1144","2AW7|1|A|A|1145","2AW7|1|A|A|1146","2AW7|1|A|C|1147","2AW7|1|A|U|1148","2AW7|1|A|C|1149"]},"motif_id":"IL_88403.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-cSW-cWW-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_88684.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"12_cWW---cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_88865.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_89028.1","chainbreak":"5","common_name":"Part of H71 junction in 23S rRNA E.c. H.m. and Tetrahymena","annotation":"","bp_signature":"cWW-L-R-L-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_89461.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"06_cWW--cWW"}, {"num_instances":2,"num_nucleotides":23,"alignment":{"IL_1NBS_003":["1NBS|1|A|C|184","1NBS|1|A|A|185","1NBS|1|A|C|186","1NBS|1|A|A|187","1NBS|1|A|G|188","1NBS|1|A|U|189","1NBS|1|A|G|190","1NBS|1|A|A|191","1NBS|1|A|C|192","1NBS|1|A|G|193","1NBS|1|A|A|195","1NBS|1|A|G|196","1NBS|1|A|U|197","1NBS|1|A|A|216","1NBS|1|A|G|217","1NBS|1|A|U|218","1NBS|1|A|G|219","1NBS|1|A|G|220","1NBS|1|A|A|221","1NBS|1|A|A|222","1NBS|1|A|C|223","1NBS|1|A|G|224","1NBS|1|A|G|226"],"IL_1NBS_010":["1NBS|1|B|C|184","1NBS|1|B|A|185","1NBS|1|B|C|186","1NBS|1|B|A|187","1NBS|1|B|G|188","1NBS|1|B|U|189","1NBS|1|B|G|190","1NBS|1|B|A|191","1NBS|1|B|C|192","1NBS|1|B|G|193","1NBS|1|B|A|195","1NBS|1|B|G|196","1NBS|1|B|U|197","1NBS|1|B|A|216","1NBS|1|B|G|217","1NBS|1|B|U|218","1NBS|1|B|G|219","1NBS|1|B|G|220","1NBS|1|B|A|221","1NBS|1|B|A|222","1NBS|1|B|C|223","1NBS|1|B|G|224","1NBS|1|B|G|226"]},"motif_id":"IL_90057.1","chainbreak":"13","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_90459.1","chainbreak":"13","common_name":"cWW AG or UU","annotation":"More than one motif","bp_signature":"06_cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_3SIV_002":["3SIV|1|C|C|40","3SIV|1|C|G|41","3SIV|1|C|C|42","3SIV|1|C|A|43","3SIV|1|C|U|44","3SIV|1|C|G|46","3SIV|1|F|C|40","3SIV|1|F|G|41","3SIV|1|F|C|42","3SIV|1|F|A|43","3SIV|1|F|U|44","3SIV|1|F|G|46"]},"motif_id":"IL_91078.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSW-L-R-R-L-tWS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4A1C_004":["4A1C|1|3|G|21","4A1C|1|3|A|22","4A1C|1|3|A|23","4A1C|1|3|A|24","4A1C|1|3|A|25","4A1C|1|3|C|26","4A1C|1|3|G|56","4A1C|1|3|C|57"]},"motif_id":"IL_91089.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_91513.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"10_cWW-cSW-cSH,tSW,tWH--cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_91543.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"09_cWW---cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5H_130":["3U5H|1|5|U|3179","3U5H|1|5|C|3181","3U5H|1|5|G|3182","3U5H|1|5|A|3183","3U5H|1|5|A|3184","3U5H|1|5|U|3185","3U5H|1|5|A|3187","3U5H|1|5|G|3188","3U5H|1|5|C|3204","3U5H|1|5|G|3205","3U5H|1|5|C|3206","3U5H|1|5|G|3208","3U5H|1|5|A|3210"]},"motif_id":"IL_91904.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cSS-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92027.1","chainbreak":"8","common_name":"16S h21 S8 binding site","annotation":"Should 16S 594-596 be included in IL? More than one type of motif here.","bp_signature":"06_cWW-cSH-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92114.1","chainbreak":"8","common_name":"GAAA loop receptor \"platform\" motif","annotation":"One motif!","bp_signature":"09_cWW-tWH-cSH--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92123.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"12_cSS,cWW-----cWW-cWW---cSS"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1MFQ_006":["1MFQ|1|A|U|181","1MFQ|1|A|G|182","1MFQ|1|A|A|183","1MFQ|1|A|A|184","1MFQ|1|A|C|185","1MFQ|1|A|C|186","1MFQ|1|A|G|187","1MFQ|1|A|C|212","1MFQ|1|A|A|213","1MFQ|1|A|A|214","1MFQ|1|A|A|215","1MFQ|1|A|A|216"]},"motif_id":"IL_92280.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92321.1","chainbreak":"7","common_name":"Triple sheared with wobble","annotation":"Outlier is not modeled very well. Separate.","bp_signature":"12_cWW-cWW-tSH-tHS-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92333.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"08_cWW-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92459.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-tHS-L-R-cWW"}, {"num_instances":5,"num_nucleotides":7,"alignment":{"IL_4A1B_004":["4A1B|1|1|A|121","4A1B|1|1|U|122","4A1B|1|1|A|144","4A1B|1|1|A|145","4A1B|1|1|U|146","4A1B|1|1|G|148","4A1B|1|1|U|149"],"IL_3U5H_007":["3U5H|1|5|A|123","3U5H|1|5|U|124","3U5H|1|5|A|144","3U5H|1|5|G|145","3U5H|1|5|U|146","3U5H|1|5|G|148","3U5H|1|5|U|149"],"IL_2XZM_062":["2XZM|1|A|U|1229","2XZM|1|A|U|1230","2XZM|1|A|A|1197","2XZM|1|A|A|1198","2XZM|1|A|G|1199","2XZM|1|A|G|1201","2XZM|1|A|A|1202"],"IL_1S72_009":["1S72|1|0|A|248","1S72|1|0|G|249","1S72|1|0|C|260","1S72|1|0|A|261","1S72|1|0|A|262","1S72|1|0|G|264","1S72|1|0|U|265"],"IL_2XZM_018":["2XZM|1|A|U|336","2XZM|1|A|G|337","2XZM|1|A|U|309","2XZM|1|A|C|310","2XZM|1|A|U|311","2XZM|1|A|C|312","2XZM|1|A|A|314"]},"motif_id":"IL_92484.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cSH-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92936.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"07_cWW-cWW-cWW,tSH"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_93335.2","chainbreak":"2","common_name":"","annotation":"","bp_signature":"12_cWW-tSH-tSS-cWW,tSS-cSS"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_93424.1","chainbreak":"2","common_name":"tWH-inserted-tHS","annotation":"extra base inserted in helix","bp_signature":"09_cWW-tWH--tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_94430.1","chainbreak":"2","common_name":"16S h32-h33-h34 3WJ","annotation":"IL_2AW7_046 is part of h32-h33-h34 3WJ","bp_signature":"05_cWW-cWS-cWW"}, {"num_instances":2,"num_nucleotides":17,"alignment":{"IL_3D0U_003":["3D0U|1|A|G|19","3D0U|1|A|A|20","3D0U|1|A|U|21","3D0U|1|A|G|22","3D0U|1|A|A|23","3D0U|1|A|G|24","3D0U|1|A|U|25","3D0U|1|A|A|26","3D0U|1|A|G|27","3D0U|1|A|U|60","3D0U|1|A|G|61","3D0U|1|A|A|62","3D0U|1|A|A|63","3D0U|1|A|A|64","3D0U|1|A|G|65","3D0U|1|A|G|66","3D0U|1|A|C|67"],"IL_3DIR_003":["3DIR|1|A|G|22","3DIR|1|A|A|23","3DIR|1|A|U|24","3DIR|1|A|G|25","3DIR|1|A|A|26","3DIR|1|A|G|27","3DIR|1|A|U|28","3DIR|1|A|A|29","3DIR|1|A|G|30","3DIR|1|A|U|63","3DIR|1|A|G|64","3DIR|1|A|A|65","3DIR|1|A|A|66","3DIR|1|A|A|67","3DIR|1|A|G|68","3DIR|1|A|G|69","3DIR|1|A|C|70"]},"motif_id":"IL_94744.1","chainbreak":"9","common_name":"Sarcin-ricin motif with extra cWW GA pair","annotation":"From Lysine Riboswitch","bp_signature":"cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_95150.2","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-tHS-cWW"}, {"num_instances":3,"num_nucleotides":14,"alignment":{"IL_1FJG_034":["1FJG|1|A|G|887","1FJG|1|A|G|888","1FJG|1|A|A|889","1FJG|1|A|G|890","1FJG|1|A|U|891","1FJG|1|A|A|892","1FJG|1|A|C|893","1FJG|1|A|G|894","1FJG|1|A|U|905","1FJG|1|A|G|906","1FJG|1|A|A|907","1FJG|1|A|A|908","1FJG|1|A|A|909","1FJG|1|A|C|910"],"IL_2AW7_041":["2AW7|1|A|G|887","2AW7|1|A|G|888","2AW7|1|A|A|889","2AW7|1|A|G|890","2AW7|1|A|U|891","2AW7|1|A|A|892","2AW7|1|A|C|893","2AW7|1|A|G|894","2AW7|1|A|U|905","2AW7|1|A|A|906","2AW7|1|A|A|907","2AW7|1|A|A|908","2AW7|1|A|A|909","2AW7|1|A|C|910"],"IL_3U5F_057":["3U5F|1|6|G|1111","3U5F|1|6|G|1112","3U5F|1|6|A|1113","3U5F|1|6|G|1114","3U5F|1|6|U|1115","3U5F|1|6|A|1116","3U5F|1|6|U|1117","3U5F|1|6|G|1118","3U5F|1|6|U|1129","3U5F|1|6|G|1130","3U5F|1|6|A|1131","3U5F|1|6|A|1132","3U5F|1|6|A|1133","3U5F|1|6|C|1134"]},"motif_id":"IL_95652.2","chainbreak":"8","common_name":"SSU Helix 27 (h27) IL Sarcin-Ricin motif","annotation":"","bp_signature":"cWW-tSH-tHH-cSH-tWH-tHS-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_96260.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_97057.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"11_cWW-cWW-tWH--tHS-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_2XZM_019":["2XZM|1|A|G|354","2XZM|1|A|A|355","2XZM|1|A|G|356","2XZM|1|A|C|367","2XZM|1|A|G|368","2XZM|1|A|A|369","2XZM|1|A|U|370","2XZM|1|A|U|371","2XZM|1|A|C|372"]},"motif_id":"IL_97073.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_97217.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"04_cWW-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_1LNG_003":["1LNG|1|B|G|200","1LNG|1|B|C|201","1LNG|1|B|C|202","1LNG|1|B|A|203","1LNG|1|B|G|204","1LNG|1|B|G|205","1LNG|1|B|C|206","1LNG|1|B|G|215","1LNG|1|B|A|216","1LNG|1|B|G|217","1LNG|1|B|C|218","1LNG|1|B|A|219","1LNG|1|B|A|220","1LNG|1|B|C|221"],"IL_3KTW_004":["3KTW|1|C|G|201","3KTW|1|C|C|202","3KTW|1|C|C|203","3KTW|1|C|A|204","3KTW|1|C|G|205","3KTW|1|C|G|206","3KTW|1|C|C|207","3KTW|1|C|G|216","3KTW|1|C|A|217","3KTW|1|C|G|218","3KTW|1|C|C|219","3KTW|1|C|A|220","3KTW|1|C|A|221","3KTW|1|C|C|222"]},"motif_id":"IL_97833.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_3U5H_011":["3U5H|1|5|U|169","3U5H|1|5|G|170","3U5H|1|5|G|171","3U5H|1|5|G|172","3U5H|1|5|G|173","3U5H|1|5|C|174","3U5H|1|5|G|244","3U5H|1|5|U|245","3U5H|1|5|U|246","3U5H|1|5|C|247","3U5H|1|5|U|248","3U5H|1|5|U|249","3U5H|1|5|U|250","3U5H|1|5|G|251","3U5H|1|5|U|252","3U5H|1|5|A|253"]},"motif_id":"IL_97842.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_98421.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":2,"num_nucleotides":8,"alignment":{"IL_1S72_044":["1S72|1|0|G|1163","1S72|1|0|A|1166","1S72|1|0|G|1167","1S72|1|0|C|1179","1S72|1|0|U|1180","1S72|1|0|A|1181","1S72|1|0|C|1182","1S72|1|0|C|1183"],"IL_2QBG_013":["2QBG|1|B|C|269","2QBG|1|B|A|270","2QBG|1|B|G|271","2QBG|1|B|C|366","2QBG|1|B|G|367","2QBG|1|B|A|368","2QBG|1|B|U|369","2QBG|1|B|G|370"]},"motif_id":"IL_98566.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_98591.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"13_cSS,cWW-tSS-tWW,tHH-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5H_095":["3U5H|1|5|C|2277","3U5H|1|5|C|2278","3U5H|1|5|A|2279","3U5H|1|5|A|2280","3U5H|1|5|U|2282","3U5H|1|5|G|2283","3U5H|1|5|C|2284","3U5H|1|5|C|2285","3U5H|1|5|U|2286","3U5H|1|5|G|2288","3U5H|1|5|C|2304","3U5H|1|5|G|2305","3U5H|1|5|G|2307"]},"motif_id":"IL_98655.1","chainbreak":"10","common_name":"Part of H71 Junction in 26S rRNA from Yeast","annotation":"","bp_signature":"cWW-L-cHW-L-L-tHH-tSW-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5H_038":["3U5H|1|5|C|977","3U5H|1|5|G|978","3U5H|1|5|U|979","3U5H|1|5|A|980","3U5H|1|5|U|981","3U5H|1|5|C|982","3U5H|1|5|G|1101","3U5H|1|5|A|1102","3U5H|1|5|G|1104"]},"motif_id":"IL_98924.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_99165.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"05_cWW--cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_99434.1","chainbreak":"6","common_name":"Single-Base Intercalation Site","annotation":"","bp_signature":"05_cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_99515.1","chainbreak":"6","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"05_tHS,cWW-cWW"}]