[{"num_instances":1,"num_nucleotides":18,"alignment":{"IL_4CUV_072":["4CUV|1|1|G|1623","4CUV|1|1|G|1624","4CUV|1|1|A|1625","4CUV|1|1|U|1626","4CUV|1|1|U|1627","4CUV|1|1|C|1628","4CUV|1|1|U|1630","4CUV|1|1|C|1631","4CUV|1|1|G|1811","4CUV|1|1|G|1812","4CUV|1|1|A|1813","4CUV|1|1|A|1814","4CUV|1|1|U|1815","4CUV|1|1|A|1816","4CUV|1|1|G|1817","4CUV|1|1|U|1818","4CUV|1|1|U|1819","4CUV|1|1|C|1822"]},"motif_id":"IL_00346.1","chainbreak":-1,"common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cWW-L-R-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_00519.1","chainbreak":-1,"common_name":"Triple sheared (tSH-tHS-tHS) no inserted bases","annotation":"No inserted nucleotides.","bp_signature":"cWW-L-cSW-cSW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_00520.1","chainbreak":-1,"common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_00697.1","chainbreak":-1,"common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_01551.1","chainbreak":-1,"common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1VX6_095":["1VX6|1|A|U|2504","1VX6|1|A|C|2505","1VX6|1|A|A|2506","1VX6|1|A|A|2507","1VX6|1|A|C|2508","1VX6|1|A|U|2509","1VX6|1|A|A|2522","1VX6|1|A|U|2523","1VX6|1|A|A|2525","1VX6|1|A|A|2526","1VX6|1|A|G|2527"]},"motif_id":"IL_01562.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_01827.1","chainbreak":"6","common_name":"Base triple, intercalated pair, and bulged bases making long-range interactions.","annotation":"Base triple, intercalated pair, and bulged bases making long-range interactions.","bp_signature":"cWW-R-cWW-cWH-L-L-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_1S72_056":["1S72|1|0|C|1570","1S72|1|0|G|1571","1S72|1|0|A|1572","1S72|1|0|A|1573","1S72|1|0|C|1574","1S72|1|0|G|1622","1S72|1|0|C|1623","1S72|1|0|A|1624","1S72|1|0|A|1626","1S72|1|0|G|1627"]},"motif_id":"IL_02257.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHH-tHS-cWW"}, {"num_instances":6,"num_nucleotides":16,"alignment":{"IL_2QBG_016":["2QBG|1|B|G|481","2QBG|1|B|A|482","2QBG|1|B|A|483","2QBG|1|B|C|484","2QBG|1|B|G|496","2QBG|1|B|A|497","2QBG|1|B|G|498","2QBG|1|B|U|499","2QBG|1|B|G|500","2QBG|1|B|A|501","2QBG|1|B|A|502","2QBG|1|B|A|503","2QBG|1|B|A|505","2QBG|1|B|G|506","2QBG|1|B|A|507","2QBG|1|B|C|509"],"IL_4IOA_009":["4IOA|1|X|G|492","4IOA|1|X|A|493","4IOA|1|X|A|494","4IOA|1|X|C|495","4IOA|1|X|G|506","4IOA|1|X|A|507","4IOA|1|X|G|508","4IOA|1|X|U|509","4IOA|1|X|G|510","4IOA|1|X|A|511","4IOA|1|X|A|512","4IOA|1|X|A|513","4IOA|1|X|A|515","4IOA|1|X|G|516","4IOA|1|X|A|517","4IOA|1|X|C|519"],"IL_4QCN_013":["4QCN|1|A|G|507","4QCN|1|A|A|508","4QCN|1|A|A|509","4QCN|1|A|C|510","4QCN|1|A|G|521","4QCN|1|A|A|522","4QCN|1|A|G|523","4QCN|1|A|U|524","4QCN|1|A|G|525","4QCN|1|A|A|526","4QCN|1|A|A|527","4QCN|1|A|A|528","4QCN|1|A|A|530","4QCN|1|A|G|531","4QCN|1|A|A|532","4QCN|1|A|C|534"],"IL_4CUV_018":["4CUV|1|1|G|376","4CUV|1|1|A|377","4CUV|1|1|A|378","4CUV|1|1|C|379","4CUV|1|1|G|390","4CUV|1|1|A|391","4CUV|1|1|G|392","4CUV|1|1|U|393","4CUV|1|1|G|394","4CUV|1|1|A|395","4CUV|1|1|A|396","4CUV|1|1|A|397","4CUV|1|1|A|399","4CUV|1|1|G|400","4CUV|1|1|U|401","4CUV|1|1|C|403"],"IL_4A1B_012":["4A1B|1|1|G|375","4A1B|1|1|A|376","4A1B|1|1|A|377","4A1B|1|1|C|378","4A1B|1|1|G|389","4A1B|1|1|G|390","4A1B|1|1|G|391","4A1B|1|1|C|392","4A1B|1|1|U|393","4A1B|1|1|A|394","4A1B|1|1|A|395","4A1B|1|1|A|396","4A1B|1|1|A|397","4A1B|1|1|G|398","4A1B|1|1|A|399","4A1B|1|1|C|400"],"IL_3U5H_015":["3U5H|1|5|G|376","3U5H|1|5|A|377","3U5H|1|5|A|378","3U5H|1|5|C|379","3U5H|1|5|G|390","3U5H|1|5|A|391","3U5H|1|5|G|392","3U5H|1|5|U|393","3U5H|1|5|G|394","3U5H|1|5|A|395","3U5H|1|5|A|396","3U5H|1|5|A|397","3U5H|1|5|A|399","3U5H|1|5|G|400","3U5H|1|5|U|401","3U5H|1|5|C|403"]},"motif_id":"IL_02359.6","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_02809.4","chainbreak":"4","common_name":"REV element IL with syn G | Tandem cWW pairs (Not AU or GC)","annotation":"More than one motif","bp_signature":"cWW-cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1S72_054":["1S72|1|0|C|1521","1S72|1|0|A|1522","1S72|1|0|G|1523","1S72|1|0|U|1524","1S72|1|0|G|1525","1S72|1|0|A|1526","1S72|1|0|A|1527","1S72|1|0|A|1528","1S72|1|0|G|1529","1S72|1|0|C|1662","1S72|1|0|G|1663","1S72|1|0|A|1664","1S72|1|0|G|1665"]},"motif_id":"IL_02835.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1S72_071":["1S72|1|0|C|1975","1S72|1|0|G|1976","1S72|1|0|U|1977","1S72|1|0|A|1978","1S72|1|0|U|1980","1S72|1|0|A|1981","1S72|1|0|C|1982","1S72|1|0|C|1983","1S72|1|0|U|1984","1S72|1|0|G|1986","1S72|1|0|C|2002","1S72|1|0|U|2003","1S72|1|0|G|2005"]},"motif_id":"IL_02897.1","chainbreak":"10","common_name":"Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.","annotation":"","bp_signature":"cWW-L-R-cWW-L-L-tSW-L-cWW"}, {"num_instances":1,"num_nucleotides":26,"alignment":{"IL_3U5H_150":["3U5H|1|8|A|44","3U5H|1|8|C|45","3U5H|1|8|G|46","3U5H|1|8|C|47","3U5H|1|8|A|48","3U5H|1|8|G|49","3U5H|1|8|C|50","3U5H|1|8|G|51","3U5H|1|8|A|52","3U5H|1|8|A|53","3U5H|1|8|A|54","3U5H|1|8|U|55","3U5H|1|8|G|56","3U5H|1|8|C|57","3U5H|1|8|G|58","3U5H|1|8|A|59","3U5H|1|8|U|60","3U5H|1|8|A|61","3U5H|1|8|C|62","3U5H|1|8|G|63","3U5H|1|8|U|64","3U5H|1|8|A|96","3U5H|1|8|A|97","3U5H|1|8|U|98","3U5H|1|8|C|99","3U5H|1|8|U|100"]},"motif_id":"IL_02957.1","chainbreak":"21","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_03030.1","chainbreak":"21","common_name":"tSH-inserted-tHS","annotation":"Two Groups! Outlier has Bulged Base that H-bonds in minor groove.","bp_signature":"cWW-R-bif-tHW-tHS-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1S72_011":["1S72|1|0|C|280","1S72|1|0|U|281","1S72|1|0|C|282","1S72|1|0|U|283","1S72|1|0|C|284","1S72|1|0|A|285","1S72|1|0|U|286","1S72|1|0|C|287","1S72|1|0|G|365","1S72|1|0|U|366","1S72|1|0|G|367","1S72|1|0|C|368","1S72|1|0|G|369"]},"motif_id":"IL_03110.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-L-L-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_4FAW_011":["4FAW|1|A|G|267","4FAW|1|A|A|268","4FAW|1|A|G|269","4FAW|1|A|G|270","4FAW|1|A|U|271","4FAW|1|A|A|282","4FAW|1|A|A|283","4FAW|1|A|G|284","4FAW|1|A|U|285","4FAW|1|A|C|286"]},"motif_id":"IL_03282.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tHW-tHS-cWW-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_4P8Z_003":["4P8Z|1|A|G|72","4P8Z|1|A|U|73","4P8Z|1|A|G|74","4P8Z|1|A|G|75","4P8Z|1|A|C|86","4P8Z|1|A|G|87","4P8Z|1|A|U|88","4P8Z|1|A|A|89","4P8Z|1|A|A|90","4P8Z|1|A|A|92","4P8Z|1|A|C|94"],"IL_4P9R_003":["4P9R|1|A|G|290","4P9R|1|A|U|291","4P9R|1|A|G|292","4P9R|1|A|G|293","4P9R|1|A|C|304","4P9R|1|A|G|305","4P9R|1|A|U|306","4P9R|1|A|A|307","4P9R|1|A|A|308","4P9R|1|A|A|310","4P9R|1|A|C|312"]},"motif_id":"IL_03362.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSS-tWW-L-tSH-R-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1VW3_050":["1VW3|1|A|G|1635","1VW3|1|A|C|1636","1VW3|1|A|G|1658","1VW3|1|A|U|1659","1VW3|1|A|A|1660","1VW3|1|A|A|1661","1VW3|1|A|U|1662","1VW3|1|A|A|1663","1VW3|1|A|A|1664","1VW3|1|A|G|1665","1VW3|1|A|A|1666","1VW3|1|A|A|1667","1VW3|1|A|C|1668"]},"motif_id":"IL_03808.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-R-R-R-R-R-cWW"}, {"num_instances":5,"num_nucleotides":11,"alignment":{"IL_4QCN_038":["4QCN|1|A|C|1064","4QCN|1|A|U|1065","4QCN|1|A|A|1066","4QCN|1|A|A|1067","4QCN|1|A|G|1068","4QCN|1|A|U|1069","4QCN|1|A|G|1070","4QCN|1|A|C|1185","4QCN|1|A|U|1186","4QCN|1|A|A|1188","4QCN|1|A|G|1190"],"IL_1S72_041":["1S72|1|0|U|1115","1S72|1|0|U|1116","1S72|1|0|A|1117","1S72|1|0|A|1118","1S72|1|0|G|1119","1S72|1|0|U|1120","1S72|1|0|G|1121","1S72|1|0|C|1243","1S72|1|0|U|1244","1S72|1|0|A|1246","1S72|1|0|A|1248"],"IL_4IOA_035":["4IOA|1|X|C|1029","4IOA|1|X|U|1030","4IOA|1|X|C|1031","4IOA|1|X|A|1032","4IOA|1|X|G|1033","4IOA|1|X|U|1034","4IOA|1|X|G|1035","4IOA|1|X|C|1150","4IOA|1|X|U|1151","4IOA|1|X|A|1153","4IOA|1|X|G|1155"],"IL_2QBG_039":["2QBG|1|B|U|1018","2QBG|1|B|U|1019","2QBG|1|B|A|1020","2QBG|1|B|A|1021","2QBG|1|B|G|1022","2QBG|1|B|U|1023","2QBG|1|B|G|1024","2QBG|1|B|C|1140","2QBG|1|B|U|1141","2QBG|1|B|A|1142","2QBG|1|B|A|1144"],"IL_1VW3_034":["1VW3|1|A|A|943","1VW3|1|A|U|944","1VW3|1|A|A|945","1VW3|1|A|A|946","1VW3|1|A|G|947","1VW3|1|A|U|948","1VW3|1|A|G|949","1VW3|1|A|C|1106","1VW3|1|A|U|1107","1VW3|1|A|A|1118","1VW3|1|A|U|1120"]},"motif_id":"IL_04397.2","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tWH-L-tHW-cSH-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3U5H_021":["3U5H|1|5|G|531","3U5H|1|5|A|532","3U5H|1|5|A|533","3U5H|1|5|G|535","3U5H|1|5|U|536","3U5H|1|5|A|537","3U5H|1|5|G|538","3U5H|1|5|U|553","3U5H|1|5|A|554","3U5H|1|5|U|555","3U5H|1|5|U|556","3U5H|1|5|A|557","3U5H|1|5|A|559","3U5H|1|5|G|560","3U5H|1|5|C|561"]},"motif_id":"IL_05221.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_4MGN_004":["4MGN|1|C|C|37","4MGN|1|C|C|38","4MGN|1|C|G|39","4MGN|1|C|A|40","4MGN|1|C|A|41","4MGN|1|C|G|42","4MGN|1|C|C|43","4MGN|1|C|G|44","4MGN|1|C|A|45","4MGN|1|C|G|46","4MGN|1|C|U|68","4MGN|1|C|G|69"]},"motif_id":"IL_05513.1","chainbreak":"10","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tWH-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_06177.1","chainbreak":"10","common_name":"cWW AG or UU","annotation":"More than one motif","bp_signature":"cWW-L-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5F_037":["3U5F|1|6|U|649","3U5F|1|6|U|650","3U5F|1|6|G|652","3U5F|1|6|C|653","3U5F|1|6|G|677","3U5F|1|6|A|678","3U5F|1|6|U|679","3U5F|1|6|U|680","3U5F|1|6|U|681","3U5F|1|6|C|682","3U5F|1|6|C|683","3U5F|1|6|A|684","3U5F|1|6|A|685"]},"motif_id":"IL_06306.1","chainbreak":"10","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_06413.1","chainbreak":"10","common_name":"LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1","annotation":"cSH platform | C-loop like","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_055":["2AW7|1|A|C|1158","2AW7|1|A|G|1160","2AW7|1|A|C|1161","2AW7|1|A|G|1175","2AW7|1|A|A|1176","2AW7|1|A|G|1177","2AW7|1|A|G|1178","2AW7|1|A|A|1179","2AW7|1|A|A|1180","2AW7|1|A|G|1181"]},"motif_id":"IL_06468.1","chainbreak":"3","common_name":"16S h40 3WJ E.c.","annotation":"16S h40 IL adjacent to 3WJ","bp_signature":"cWW-tWH-R-R-R-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_06527.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-cWW-L-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_1VW3_086":["1VW3|1|A|U|2954","1VW3|1|A|G|2955","1VW3|1|A|U|2958","1VW3|1|A|C|2959","1VW3|1|A|G|3053","1VW3|1|A|A|3054","1VW3|1|A|U|3055","1VW3|1|A|A|3056","1VW3|1|A|A|3057","1VW3|1|A|G|3058"],"IL_2QBG_106":["2QBG|1|B|C|2889","2QBG|1|B|G|2890","2QBG|1|B|U|2891","2QBG|1|B|G|2892","2QBG|1|B|C|2806","2QBG|1|B|U|2807","2QBG|1|B|G|2808","2QBG|1|B|A|2809","2QBG|1|B|A|2810","2QBG|1|B|G|2811"]},"motif_id":"IL_06675.1","chainbreak":"4","common_name":"Triple Sheared with unpaired, inserted A","annotation":"There is a third tHS pair, but it is ambiguous and not annotated consistently","bp_signature":"cWW-tSH-L-R-R-R-cWW"}, {"num_instances":2,"num_nucleotides":8,"alignment":{"IL_3U5F_077":["3U5F|1|6|G|1488","3U5F|1|6|U|1489","3U5F|1|6|C|1490","3U5F|1|6|C|1494","3U5F|1|6|G|1513","3U5F|1|6|U|1514","3U5F|1|6|A|1515","3U5F|1|6|C|1518"],"IL_4BPP_076":["4BPP|1|A|G|1459","4BPP|1|A|U|1460","4BPP|1|A|U|1462","4BPP|1|A|C|1465","4BPP|1|A|G|1485","4BPP|1|A|U|1486","4BPP|1|A|A|1487","4BPP|1|A|C|1490"]},"motif_id":"IL_06692.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-cSS-R-L-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2QBZ_003":["2QBZ|1|X|U|28","2QBZ|1|X|G|29","2QBZ|1|X|A|30","2QBZ|1|X|G|31","2QBZ|1|X|U|153","2QBZ|1|X|A|154","2QBZ|1|X|A|156","2QBZ|1|X|G|157"]},"motif_id":"IL_06808.1","chainbreak":"4","common_name":"Double sheared (tSH-tSH) one bulged base.","annotation":"","bp_signature":"cWW-tSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_4FAW_003":["4FAW|1|A|C|76","4FAW|1|A|A|77","4FAW|1|A|A|78","4FAW|1|A|G|79","4FAW|1|A|U|103","4FAW|1|A|G|104","4FAW|1|A|A|105","4FAW|1|A|G|108","4FAW|1|A|A|109","4FAW|1|A|A|110","4FAW|1|A|G|111"]},"motif_id":"IL_06847.1","chainbreak":"4","common_name":"Group II Intron IL","annotation":"Two bulged out stacked Purines.","bp_signature":"cWW-R-cSW-R-R-tHS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4CUX_012":["4CUX|1|2|U|150","4CUX|1|2|G|151","4CUX|1|2|U|152","4CUX|1|2|G|153","4CUX|1|2|U|161","4CUX|1|2|A|162","4CUX|1|2|G|163","4CUX|1|2|A|164"]},"motif_id":"IL_07252.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWH-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_07300.3","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_08114.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1VX6_043":["1VX6|1|A|U|1095","1VX6|1|A|G|1096","1VX6|1|A|A|1097","1VX6|1|A|U|1098","1VX6|1|A|U|1099","1VX6|1|A|A|1101","1VX6|1|A|U|1102","1VX6|1|A|A|1103","1VX6|1|A|U|1104","1VX6|1|A|A|1228","1VX6|1|A|A|1230","1VX6|1|A|A|1231","1VX6|1|A|A|1233"]},"motif_id":"IL_08588.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_08926.5","chainbreak":"9","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-cHH-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1FJG_009":["1FJG|1|A|G|148","1FJG|1|A|A|149","1FJG|1|A|C|150","1FJG|1|A|A|151","1FJG|1|A|A|152","1FJG|1|A|C|153","1FJG|1|A|G|168","1FJG|1|A|C|169","1FJG|1|A|U|170","1FJG|1|A|A|171","1FJG|1|A|A|172","1FJG|1|A|C|174"]},"motif_id":"IL_09333.1","chainbreak":"6","common_name":"SSU Helix 8 (h8) IL T. thermophilus","annotation":"","bp_signature":"cWW-tWH-tWH-tHW-tHW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_09430.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-L-L-cWS-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_09530.3","chainbreak":"6","common_name":"Double S-turn motif","annotation":"Two different groups. Double S-turn is from TPP riboswitch and Decoding Site from Human.","bp_signature":"cWW-cWH-L-R-cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_1KD5_001":["1KD5|1|A|U|3","1KD5|1|A|C|4","1KD5|1|A|A|5","1KD5|1|A|C|6","1KD5|1|A|A|7","1KD5|1|A|G|8","1KD5|1|B|U|3","1KD5|1|B|C|4","1KD5|1|B|A|5","1KD5|1|B|C|6","1KD5|1|B|A|7","1KD5|1|B|G|8"],"IL_283D_001":["283D|1|A|C|4","283D|1|A|G|5","283D|1|A|A|6","283D|1|A|A|7","283D|1|A|A|8","283D|1|A|G|9","283D|1|A|C|4||||12_555","283D|1|A|G|5||||12_555","283D|1|A|A|6||||12_555","283D|1|A|A|7||||12_555","283D|1|A|A|8||||12_555","283D|1|A|G|9||||12_555"]},"motif_id":"IL_09882.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHW-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10119.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10554.1","chainbreak":"6","common_name":"SSU Helix 23 (h23) Kink-turn T. thermophilus","annotation":"has additional cWW AA pair","bp_signature":"cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10628.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-tSS-tWH-L-tWS-R-bif-R-R-R-R-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_10743.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11015.2","chainbreak":"6","common_name":"tHS and base triple with flanking pair","annotation":"tHS and base triple with flanking pair","bp_signature":"cWW-cSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_1VX6_108":["1VX6|1|A|C|3115","1VX6|1|A|A|3117","1VX6|1|A|A|3118","1VX6|1|A|A|3119","1VX6|1|A|U|3120","1VX6|1|A|G|3121","1VX6|1|A|A|3122","1VX6|1|A|G|3124","1VX6|1|A|C|3136","1VX6|1|A|U|3137","1VX6|1|A|A|3138","1VX6|1|A|C|3139","1VX6|1|A|U|3140","1VX6|1|A|G|3141","1VX6|1|A|U|3142","1VX6|1|A|G|3143"]},"motif_id":"IL_11268.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-L-L-tWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_023":["2AW7|1|A|G|450","2AW7|1|A|A|451","2AW7|1|A|A|452","2AW7|1|A|G|453","2AW7|1|A|G|454","2AW7|1|A|U|479","2AW7|1|A|U|480","2AW7|1|A|G|481","2AW7|1|A|A|482","2AW7|1|A|C|483"]},"motif_id":"IL_11302.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-tHW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11529.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cWS-cWH-R-R-R-cWH-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_2QBZ_001":["2QBZ|1|X|C|21","2QBZ|1|X|G|22","2QBZ|1|X|C|163","2QBZ|1|X|G|164","2QBZ|1|X|A|165","2QBZ|1|X|U|167","2QBZ|1|X|G|168"]},"motif_id":"IL_11778.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_11989.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_12211.3","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-L-cWW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1X8W_003":["1X8W|1|A|C|121","1X8W|1|A|A|123","1X8W|1|A|C|124","1X8W|1|A|A|125","1X8W|1|A|G|126","1X8W|1|A|C|127","1X8W|1|A|G|195","1X8W|1|A|A|196","1X8W|1|A|C|197","1X8W|1|A|A|198","1X8W|1|A|G|200"]},"motif_id":"IL_12507.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cSS-cSS-R-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_12849.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-tSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13023.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-tSH-tWH-tHW-L-R-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13069.6","chainbreak":"6","common_name":"LSU 3WJ H32-H33-H35A","annotation":"This 3WJ contains an \"isolated\" cWW pair. This IL is a submotif of a 3WJ. The group is very homogeneous and conserved in Euk, Archael, and Bact LSU.","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13959.7","chainbreak":"6","common_name":"Double Sheared (tSH-tHS)","annotation":"Almost all have zero bulged bases","bp_signature":"cWW-tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_14081.1","chainbreak":"6","common_name":"Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | tSH-inserted","annotation":"More than one motif","bp_signature":"cWW-L-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_14240.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-L-L-cWW"}, {"num_instances":6,"num_nucleotides":13,"alignment":{"IL_4QCN_073":["4QCN|1|A|C|1956","4QCN|1|A|G|1957","4QCN|1|A|A|1958","4QCN|1|A|A|1959","4QCN|1|A|U|1961","4QCN|1|A|U|1962","4QCN|1|A|C|1963","4QCN|1|A|C|1964","4QCN|1|A|U|1965","4QCN|1|A|G|1967","4QCN|1|A|C|1983","4QCN|1|A|C|1984","4QCN|1|A|G|1986"],"IL_1VW3_061":["1VW3|1|A|C|1834","1VW3|1|A|G|1835","1VW3|1|A|A|1836","1VW3|1|A|A|1837","1VW3|1|A|U|1839","1VW3|1|A|U|1840","1VW3|1|A|C|1841","1VW3|1|A|C|1842","1VW3|1|A|U|1843","1VW3|1|A|G|1845","1VW3|1|A|C|1861","1VW3|1|A|C|1862","1VW3|1|A|G|1864"],"IL_4A1B_092":["4A1B|1|1|C|2272","4A1B|1|1|C|2273","4A1B|1|1|A|2274","4A1B|1|1|A|2275","4A1B|1|1|U|2277","4A1B|1|1|G|2278","4A1B|1|1|C|2279","4A1B|1|1|C|2280","4A1B|1|1|U|2281","4A1B|1|1|G|2283","4A1B|1|1|C|2299","4A1B|1|1|G|2300","4A1B|1|1|G|2302"],"IL_4CUV_098":["4CUV|1|1|C|2277","4CUV|1|1|C|2278","4CUV|1|1|A|2279","4CUV|1|1|A|2280","4CUV|1|1|U|2282","4CUV|1|1|G|2283","4CUV|1|1|C|2284","4CUV|1|1|C|2285","4CUV|1|1|U|2286","4CUV|1|1|G|2288","4CUV|1|1|C|2304","4CUV|1|1|G|2305","4CUV|1|1|G|2307"],"IL_2QBG_077":["2QBG|1|B|C|1934","2QBG|1|B|G|1935","2QBG|1|B|A|1936","2QBG|1|B|A|1937","2QBG|1|B|U|1939","2QBG|1|B|U|1940","2QBG|1|B|C|1941","2QBG|1|B|C|1942","2QBG|1|B|U|1943","2QBG|1|B|G|1945","2QBG|1|B|C|1961","2QBG|1|B|C|1962","2QBG|1|B|G|1964"],"IL_1VX6_097":["1VX6|1|A|C|2570","1VX6|1|A|C|2571","1VX6|1|A|A|2572","1VX6|1|A|A|2573","1VX6|1|A|U|2575","1VX6|1|A|G|2576","1VX6|1|A|C|2577","1VX6|1|A|C|2578","1VX6|1|A|U|2579","1VX6|1|A|G|2581","1VX6|1|A|C|2597","1VX6|1|A|G|2598","1VX6|1|A|G|2600"]},"motif_id":"IL_15123.3","chainbreak":"10","common_name":"Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.","annotation":"","bp_signature":"cWW-L-R-cHW-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_4A1B_016":["4A1B|1|1|G|449","4A1B|1|1|C|450","4A1B|1|1|A|451","4A1B|1|1|U|452","4A1B|1|1|A|453","4A1B|1|1|A|454","4A1B|1|1|G|455","4A1B|1|1|U|523","4A1B|1|1|G|524","4A1B|1|1|U|526","4A1B|1|1|A|527","4A1B|1|1|C|528"]},"motif_id":"IL_15205.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cSW-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_15219.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-cWW-R-R-R-R-R-R-cSH-L-L-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_15702.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-R-tSS-tWW-tWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_15813.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-cSW-cSW-cWW-bif-cSW-R-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_3U5H_107":["3U5H|1|5|G|2770","3U5H|1|5|U|2771","3U5H|1|5|C|2772","3U5H|1|5|C|2773","3U5H|1|5|G|2787","3U5H|1|5|C|2788"]},"motif_id":"IL_15884.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-cWW"}, {"num_instances":4,"num_nucleotides":5,"alignment":{"IL_1U6B_010":["1U6B|1|B|U|160","1U6B|1|B|A|161","1U6B|1|B|U|162","1U6B|1|B|A|150","1U6B|1|B|G|151"],"IL_4FNJ_004":["4FNJ|1|A|U|25","4FNJ|1|A|A|26","4FNJ|1|A|U|27","4FNJ|1|A|A|11","4FNJ|1|A|G|12"],"IL_1NTB_001":["1NTB|1|A|C|5","1NTB|1|A|G|6","1NTB|1|A|C|7","1NTB|1|B|G|114","1NTB|1|B|G|115"],"IL_1VW3_024":["1VW3|1|A|U|855","1VW3|1|A|A|856","1VW3|1|A|A|858","1VW3|1|A|U|738","1VW3|1|A|A|740"]},"motif_id":"IL_16166.5","chainbreak":"3","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-L-cWW"}, {"num_instances":2,"num_nucleotides":25,"alignment":{"IL_3U5H_057":["3U5H|1|5|G|1194","3U5H|1|5|A|1195","3U5H|1|5|A|1197","3U5H|1|5|C|1198","3U5H|1|5|C|1199","3U5H|1|5|A|1200","3U5H|1|5|C|1201","3U5H|1|5|A|1202","3U5H|1|5|A|1203","3U5H|1|5|A|1204","3U5H|1|5|A|1205","3U5H|1|5|U|1299","3U5H|1|5|G|1300","3U5H|1|5|A|1301","3U5H|1|5|A|1303","3U5H|1|5|A|1304","3U5H|1|5|G|1306","3U5H|1|5|G|1307","3U5H|1|5|A|1308","3U5H|1|5|U|1309","3U5H|1|5|G|1310","3U5H|1|5|G|1311","3U5H|1|5|C|1312","3U5H|1|5|G|1313","3U5H|1|5|C|1314"],"IL_4A1B_058":["4A1B|1|1|G|1221","4A1B|1|1|A|1222","4A1B|1|1|A|1224","4A1B|1|1|C|1225","4A1B|1|1|C|1226","4A1B|1|1|A|1227","4A1B|1|1|C|1228","4A1B|1|1|A|1229","4A1B|1|1|A|1230","4A1B|1|1|A|1231","4A1B|1|1|A|1232","4A1B|1|1|U|1326","4A1B|1|1|G|1327","4A1B|1|1|A|1328","4A1B|1|1|A|1330","4A1B|1|1|A|1331","4A1B|1|1|G|1333","4A1B|1|1|G|1334","4A1B|1|1|A|1335","4A1B|1|1|U|1336","4A1B|1|1|G|1337","4A1B|1|1|G|1338","4A1B|1|1|C|1339","4A1B|1|1|G|1340","4A1B|1|1|C|1341"]},"motif_id":"IL_16330.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_16921.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_17204.2","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_17682.1","chainbreak":"11","common_name":"Sarcin-ricin motif from Eukaryal LSU Helix 11","annotation":"LSU H11 Tetrahymena","bp_signature":"cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW"}, {"num_instances":12,"num_nucleotides":5,"alignment":{"IL_1MWL_002":["1MWL|1|A|C|6","1MWL|1|A|A|7","1MWL|1|A|C|8","1MWL|1|B|G|37","1MWL|1|B|G|40"],"IL_1MWL_003":["1MWL|1|B|C|28","1MWL|1|B|A|29","1MWL|1|B|C|30","1MWL|1|A|G|15","1MWL|1|A|G|18||A"],"IL_3TD1_005":["3TD1|1|B|C|30","3TD1|1|B|G|31","3TD1|1|B|C|32","3TD1|1|A|G|16","3TD1|1|A|G|19"],"IL_2O3X_002":["2O3X|1|A|C|7","2O3X|1|A|A|8","2O3X|1|A|C|9","2O3X|1|B|G|39","2O3X|1|B|G|42"],"IL_3TD1_002":["3TD1|1|A|C|7","3TD1|1|A|G|8","3TD1|1|A|C|9","3TD1|1|B|G|39","3TD1|1|B|G|42"],"IL_1O9M_002":["1O9M|1|A|C|1407","1O9M|1|A|A|1408","1O9M|1|A|C|1409","1O9M|1|B|G|1491","1O9M|1|B|G|1494"],"IL_1FJG_057":["1FJG|1|A|C|1407","1FJG|1|A|A|1408","1FJG|1|A|C|1409","1FJG|1|A|G|1491","1FJG|1|A|G|1494"],"IL_1DUH_001":["1DUH|1|A|C|66||||4_555","1DUH|1|A|A|67||||4_555","1DUH|1|A|A|68||||4_555","1DUH|1|A|U|38","1DUH|1|A|G|43"],"IL_1DUH_005":["1DUH|1|A|C|66","1DUH|1|A|A|67","1DUH|1|A|A|68","1DUH|1|A|U|38||||4_555","1DUH|1|A|G|43||||4_555"],"IL_4IOA_102":["4IOA|1|X|G|2818","4IOA|1|X|G|2819","4IOA|1|X|C|2820","4IOA|1|X|G|2846","4IOA|1|X|C|2849"],"IL_4IOA_023":["4IOA|1|X|U|942","4IOA|1|X|U|943","4IOA|1|X|A|944","4IOA|1|X|U|860","4IOA|1|X|G|861"],"IL_3J7A_015":["3J7A|1|A|C|270","3J7A|1|A|G|271","3J7A|1|A|U|272","3J7A|1|A|A|291","3J7A|1|A|G|292"]},"motif_id":"IL_18271.1","chainbreak":"3","common_name":"Single, unpaired intercalated base, consensus A | 23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_18506.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-cSH-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_18916.1","chainbreak":"3","common_name":"One or more bulged nucleotides","annotation":"One or more bulged nucleotides","bp_signature":"cWW-cWW"}, {"num_instances":3,"num_nucleotides":6,"alignment":{"IL_1S72_016":["1S72|1|0|U|548","1S72|1|0|A|551","1S72|1|0|G|553","1S72|1|0|C|606","1S72|1|0|G|607","1S72|1|0|A|608"],"IL_2AW7_068":["2AW7|1|A|U|1445","2AW7|1|A|A|1446","2AW7|1|A|C|1448","2AW7|1|A|G|1455","2AW7|1|A|A|1456","2AW7|1|A|G|1457"],"IL_2PXV_001":["2PXV|1|B|U|139","2PXV|1|B|C|142","2PXV|1|B|G|144","2PXV|1|B|C|167","2PXV|1|B|A|168","2PXV|1|B|A|169"]},"motif_id":"IL_19268.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_19986.1","chainbreak":"3","common_name":"Pair and triple","annotation":"Pair and triple","bp_signature":"cWW-cWW-cSW-cWW-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_20608.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-R-L-L-cWS-cWW-bif-cWW"}, {"num_instances":2,"num_nucleotides":13,"alignment":{"IL_1VX6_123":["1VX6|1|A|U|3405","1VX6|1|A|U|3406","1VX6|1|A|G|3407","1VX6|1|A|G|3408","1VX6|1|A|U|3409","1VX6|1|A|A|3410","1VX6|1|A|C|3411","1VX6|1|A|G|3416","1VX6|1|A|G|3417","1VX6|1|A|A|3418","1VX6|1|A|U|3419","1VX6|1|A|U|3420","1VX6|1|A|A|3421"],"IL_1UN6_004":["1UN6|1|F|U|72","1UN6|1|F|U|73","1UN6|1|F|A|74","1UN6|1|F|G|75","1UN6|1|F|U|76","1UN6|1|F|A|77","1UN6|1|F|C|78","1UN6|1|F|G|98","1UN6|1|F|G|99","1UN6|1|F|A|100","1UN6|1|F|A|101","1UN6|1|F|U|102","1UN6|1|F|A|103"]},"motif_id":"IL_21062.1","chainbreak":"7","common_name":"Sarcin-ricin motif with cWW UU instead of tSH basepair.","annotation":"From X. laevis 5S rRNA Loop E.","bp_signature":"cWW-cWW-L-R-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4BPP_050":["4BPP|1|A|C|1012","4BPP|1|A|G|1013","4BPP|1|A|A|1014","4BPP|1|A|U|1067","4BPP|1|A|C|1068","4BPP|1|A|U|1069","4BPP|1|A|U|1071","4BPP|1|A|G|1073"]},"motif_id":"IL_21077.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1FJG_011":["1FJG|1|A|C|242","1FJG|1|A|A|243","1FJG|1|A|C|245","1FJG|1|A|A|246","1FJG|1|A|G|247","1FJG|1|A|C|277","1FJG|1|A|G|278","1FJG|1|A|A|279","1FJG|1|A|G|281","1FJG|1|A|A|282","1FJG|1|A|C|283","1FJG|1|A|G|284"]},"motif_id":"IL_21254.1","chainbreak":"5","common_name":"SSU Helix 11 (h11) IL Kink-turn T. thermophilus","annotation":"","bp_signature":"cWW-tWH-cWW-tHS-tSS-R-R-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_2NZ4_009":["2NZ4|1|R|U|96","2NZ4|1|R|A|98","2NZ4|1|R|A|99","2NZ4|1|R|A|100","2NZ4|1|R|U|101","2NZ4|1|R|C|102","2NZ4|1|R|G|119","2NZ4|1|R|G|120","2NZ4|1|R|A|121","2NZ4|1|R|C|122","2NZ4|1|R|A|123","2NZ4|1|R|A|124","2NZ4|1|R|A|125","2NZ4|1|R|G|126"],"IL_2NZ4_013":["2NZ4|1|S|U|96","2NZ4|1|S|A|98","2NZ4|1|S|A|99","2NZ4|1|S|A|100","2NZ4|1|S|U|101","2NZ4|1|S|C|102","2NZ4|1|S|G|119","2NZ4|1|S|G|120","2NZ4|1|S|A|121","2NZ4|1|S|C|122","2NZ4|1|S|A|123","2NZ4|1|S|A|124","2NZ4|1|S|A|125","2NZ4|1|S|G|126"]},"motif_id":"IL_21495.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-tHW-tHW-bif-cWW"}, {"num_instances":3,"num_nucleotides":9,"alignment":{"IL_4BPP_074":["4BPP|1|A|C|1359","4BPP|1|A|U|1360","4BPP|1|A|A|1361","4BPP|1|A|U|1378","4BPP|1|A|G|1379","4BPP|1|A|G|1380","4BPP|1|A|A|1381","4BPP|1|A|A|1382","4BPP|1|A|G|1383"],"IL_3U5F_075":["3U5F|1|6|C|1389","3U5F|1|6|U|1390","3U5F|1|6|A|1391","3U5F|1|6|U|1407","3U5F|1|6|G|1408","3U5F|1|6|G|1409","3U5F|1|6|A|1410","3U5F|1|6|A|1411","3U5F|1|6|G|1412"],"IL_3J7A_065":["3J7A|1|A|C|1635","3J7A|1|A|A|1636","3J7A|1|A|U|1637","3J7A|1|A|A|1653","3J7A|1|A|G|1654","3J7A|1|A|G|1655","3J7A|1|A|A|1656","3J7A|1|A|A|1657","3J7A|1|A|G|1658"]},"motif_id":"IL_21639.2","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-tWH-R-R-R-cWW"}, {"num_instances":3,"num_nucleotides":8,"alignment":{"IL_4UN3_001":["4UN3|1|A|A|26","4UN3|1|A|G|27","4UN3|1|A|G|29","4UN3|1|A|C|40","4UN3|1|A|A|41","4UN3|1|A|A|42","4UN3|1|A|G|43","4UN3|1|A|U|45"],"IL_4UN5_001":["4UN5|1|A|A|26","4UN5|1|A|G|27","4UN5|1|A|G|29","4UN5|1|A|C|40","4UN5|1|A|A|41","4UN5|1|A|A|42","4UN5|1|A|G|43","4UN5|1|A|U|45"],"IL_4OO8_001":["4OO8|1|B|A|26","4OO8|1|B|G|27","4OO8|1|B|G|29","4OO8|1|B|C|40","4OO8|1|B|A|41","4OO8|1|B|A|42","4OO8|1|B|G|43","4OO8|1|B|U|45"]},"motif_id":"IL_22025.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_22601.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_22731.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-bif-cSW-L-R-R-L-cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_2AW7_021":["2AW7|1|A|C|440","2AW7|1|A|A|441","2AW7|1|A|G|442","2AW7|1|A|C|492","2AW7|1|A|A|493","2AW7|1|A|G|494","2AW7|1|A|A|495","2AW7|1|A|A|496","2AW7|1|A|G|497"]},"motif_id":"IL_22909.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_4JK0_003":["4JK0|1|B|C|511","4JK0|1|B|U|512","4JK0|1|B|G|513","4JK0|1|B|C|511||||4_555","4JK0|1|B|U|512||||4_555","4JK0|1|B|G|513||||4_555"]},"motif_id":"IL_22953.1","chainbreak":"3","common_name":"Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)","annotation":"More than one motif | Single sheared with 1 to 3 bulged bases. More than one Motif. | More than one motif | Single sheared with 1 to 3 bulged bases. More than one Motif. | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif. | More than one motif | Single sheared with 1 to 3 bulged bases. More than one Motif. | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif.","bp_signature":"cWW-cWW-cWW"}, {"num_instances":2,"num_nucleotides":21,"alignment":{"IL_3Q3Z_001":["3Q3Z|1|V|G|12","3Q3Z|1|V|A|13","3Q3Z|1|V|A|14","3Q3Z|1|V|A|15","3Q3Z|1|V|U|59","3Q3Z|1|V|U|60","3Q3Z|1|V|A|61","3Q3Z|1|V|G|62","3Q3Z|1|V|U|63","3Q3Z|1|V|A|64","3Q3Z|1|V|G|65","3Q3Z|1|V|U|66","3Q3Z|1|V|G|67","3Q3Z|1|V|C|68","3Q3Z|1|V|A|69","3Q3Z|1|V|A|70","3Q3Z|1|V|C|71","3Q3Z|1|V|C|72","3Q3Z|1|V|G|73","3Q3Z|1|V|A|74","3Q3Z|1|V|C|75"],"IL_3Q3Z_003":["3Q3Z|1|A|G|12","3Q3Z|1|A|A|13","3Q3Z|1|A|A|14","3Q3Z|1|A|A|15","3Q3Z|1|A|U|59","3Q3Z|1|A|U|60","3Q3Z|1|A|A|61","3Q3Z|1|A|G|62","3Q3Z|1|A|U|63","3Q3Z|1|A|A|64","3Q3Z|1|A|G|65","3Q3Z|1|A|U|66","3Q3Z|1|A|G|67","3Q3Z|1|A|C|68","3Q3Z|1|A|A|69","3Q3Z|1|A|A|70","3Q3Z|1|A|C|71","3Q3Z|1|A|C|72","3Q3Z|1|A|G|73","3Q3Z|1|A|A|74","3Q3Z|1|A|C|75"]},"motif_id":"IL_23414.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_23448.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5H_053":["3U5H|1|5|U|1167","3U5H|1|5|U|1168","3U5H|1|5|A|1169","3U5H|1|5|A|1170","3U5H|1|5|G|1171","3U5H|1|5|C|1328","3U5H|1|5|U|1329","3U5H|1|5|A|1330","3U5H|1|5|A|1332"]},"motif_id":"IL_23639.1","chainbreak":"5","common_name":"tWH-tHS-L-cWW","annotation":"Hard to tell which A is forming the tHS and which is unpaired!","bp_signature":"cWW-tWH-tHS-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24583.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-R-R-R-R-R-R-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24955.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_24982.8","chainbreak":"5","common_name":"SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif","annotation":"This is one family. 3UXR has A in syn which is wrong","bp_signature":"cWW-tSH-tHW-tHS-cWW"}, {"num_instances":6,"num_nucleotides":18,"alignment":{"IL_1DFU_001":["1DFU|1|N|C|71","1DFU|1|N|G|72","1DFU|1|N|A|73","1DFU|1|N|U|74","1DFU|1|N|G|75","1DFU|1|N|G|76","1DFU|1|N|U|77","1DFU|1|N|A|78","1DFU|1|N|G|79","1DFU|1|M|C|97","1DFU|1|M|G|98","1DFU|1|M|A|99","1DFU|1|M|G|100","1DFU|1|M|A|101","1DFU|1|M|G|102","1DFU|1|M|U|103","1DFU|1|M|A|104","1DFU|1|M|G|105"],"IL_2QBG_005":["2QBG|1|A|C|71","2QBG|1|A|G|72","2QBG|1|A|A|73","2QBG|1|A|U|74","2QBG|1|A|G|75","2QBG|1|A|G|76","2QBG|1|A|U|77","2QBG|1|A|A|78","2QBG|1|A|G|79","2QBG|1|A|C|97","2QBG|1|A|G|98","2QBG|1|A|A|99","2QBG|1|A|G|100","2QBG|1|A|A|101","2QBG|1|A|G|102","2QBG|1|A|U|103","2QBG|1|A|A|104","2QBG|1|A|G|105"],"IL_1FEU_001":["1FEU|1|B|C|71","1FEU|1|B|G|72","1FEU|1|B|A|73","1FEU|1|B|U|74","1FEU|1|B|G|75","1FEU|1|B|G|76","1FEU|1|B|U|77","1FEU|1|B|A|78","1FEU|1|B|G|79","1FEU|1|C|C|97","1FEU|1|C|G|98","1FEU|1|C|A|99","1FEU|1|C|G|100","1FEU|1|C|A|101","1FEU|1|C|G|102","1FEU|1|C|U|103","1FEU|1|C|A|104","1FEU|1|C|G|105"],"IL_4QCN_112":["4QCN|1|B|C|71","4QCN|1|B|G|72","4QCN|1|B|A|73","4QCN|1|B|U|74","4QCN|1|B|G|75","4QCN|1|B|G|76","4QCN|1|B|U|77","4QCN|1|B|A|78","4QCN|1|B|C|79","4QCN|1|B|G|98","4QCN|1|B|G|99","4QCN|1|B|A|100","4QCN|1|B|G|101","4QCN|1|B|A|102","4QCN|1|B|G|103","4QCN|1|B|U|104","4QCN|1|B|A|105","4QCN|1|B|G|106"],"IL_4IOA_108":["4IOA|1|Y|C|73","4IOA|1|Y|A|74","4IOA|1|Y|A|75","4IOA|1|Y|U|76","4IOA|1|Y|G|77","4IOA|1|Y|A|78","4IOA|1|Y|U|79","4IOA|1|Y|A|80","4IOA|1|Y|C|81","4IOA|1|Y|G|100","4IOA|1|Y|A|101","4IOA|1|Y|A|102","4IOA|1|Y|A|103","4IOA|1|Y|A|104","4IOA|1|Y|G|105","4IOA|1|Y|U|106","4IOA|1|Y|C|107","4IOA|1|Y|G|108"],"IL_364D_003":["364D|1|C|C|97","364D|1|C|G|98","364D|1|C|A|99","364D|1|C|G|100","364D|1|C|A|101","364D|1|C|G|102","364D|1|C|U|103","364D|1|C|A|104","364D|1|C|G|105","364D|1|B|C|71","364D|1|B|G|72","364D|1|B|A|73","364D|1|B|U|74","364D|1|B|G|75","364D|1|B|G|76","364D|1|B|U|77","364D|1|B|A|78","364D|1|B|G|79"]},"motif_id":"IL_25230.5","chainbreak":"9","common_name":"Bacterial 5S rRNA Loop E","annotation":"Single Group","bp_signature":"cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_1VW3_057":["1VW3|1|A|A|1757","1VW3|1|A|U|1758","1VW3|1|A|A|1759","1VW3|1|A|U|1760","1VW3|1|A|A|1761","1VW3|1|A|A|1762","1VW3|1|A|A|1763","1VW3|1|A|U|1764","1VW3|1|A|A|1786","1VW3|1|A|A|1787","1VW3|1|A|U|1788","1VW3|1|A|U|1789","1VW3|1|A|A|1790","1VW3|1|A|A|1791","1VW3|1|A|A|1792","1VW3|1|A|U|1793"]},"motif_id":"IL_25420.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-tSH-tWH-tWH-L-R-R-L-L-tSH-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1FJG_032":["1FJG|1|A|G|774","1FJG|1|A|G|775","1FJG|1|A|G|776","1FJG|1|A|A|777","1FJG|1|A|G|778","1FJG|1|A|U|804","1FJG|1|A|C|805"]},"motif_id":"IL_25808.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":19,"alignment":{"IL_4CUX_041":["4CUX|1|2|U|750","4CUX|1|2|G|751","4CUX|1|2|A|752","4CUX|1|2|A|753","4CUX|1|2|A|754","4CUX|1|2|A|755","4CUX|1|2|A|756","4CUX|1|2|A|757","4CUX|1|2|U|758","4CUX|1|2|U|759","4CUX|1|2|A|791","4CUX|1|2|U|792","4CUX|1|2|A|793","4CUX|1|2|U|794","4CUX|1|2|U|795","4CUX|1|2|A|796","4CUX|1|2|G|797","4CUX|1|2|C|798","4CUX|1|2|A|799"]},"motif_id":"IL_25926.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW-cWW-L-R-R-R-R-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_26321.1","chainbreak":"5","common_name":"LSU H58 IL2 H.m.","annotation":"","bp_signature":"cWW-tSH-R-tHS-L-bif-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_2AW7_022":["2AW7|1|A|G|446","2AW7|1|A|G|447","2AW7|1|A|A|448","2AW7|1|A|G|449","2AW7|1|A|G|450","2AW7|1|A|C|483","2AW7|1|A|G|484","2AW7|1|A|U|486","2AW7|1|A|A|487","2AW7|1|A|C|488"]},"motif_id":"IL_26868.1","chainbreak":"5","common_name":"","annotation":"helix 17 IL E.coli 16S rRNA","bp_signature":"cWW-tSH-tHW-tWW-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3U5H_074":["3U5H|1|5|U|1627","3U5H|1|5|C|1628","3U5H|1|5|U|1630","3U5H|1|5|C|1631","3U5H|1|5|G|1811","3U5H|1|5|G|1812","3U5H|1|5|A|1813","3U5H|1|5|A|1814","3U5H|1|5|U|1815","3U5H|1|5|A|1816"]},"motif_id":"IL_26971.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_27005.1","chainbreak":"4","common_name":"Non-canonical cWW","annotation":"Non-canonical cWW","bp_signature":"cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_27243.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4LVZ_001":["4LVZ|1|A|G|4","4LVZ|1|A|A|5","4LVZ|1|A|G|6","4LVZ|1|A|U|7","4LVZ|1|A|A|8","4LVZ|1|A|G|9","4LVZ|1|A|U|77","4LVZ|1|A|G|78","4LVZ|1|A|C|79","4LVZ|1|A|A|80","4LVZ|1|A|U|81","4LVZ|1|A|C|82","4LVZ|1|A|C|83","4LVZ|1|A|G|84","4LVZ|1|A|C|85"]},"motif_id":"IL_27640.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_27668.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_27713.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tHS-cWW-L-R-R-R-L-L-cWW"}, {"num_instances":2,"num_nucleotides":8,"alignment":{"IL_3Q1Q_009":["3Q1Q|1|C|U|32","3Q1Q|1|C|A|33","3Q1Q|1|C|G|35","3Q1Q|1|C|C|44","3Q1Q|1|C|U|45","3Q1Q|1|C|A|46","3Q1Q|1|C|A|47","3Q1Q|1|C|G|48"],"IL_4K27_004":["4K27|1|U|U|34","4K27|1|U|A|35","4K27|1|U|G|37","4K27|1|U|C|19","4K27|1|U|U|20","4K27|1|U|A|21","4K27|1|U|A|22","4K27|1|U|G|23"]},"motif_id":"IL_28003.2","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-cSH-tHW-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_1VX6_064":["1VX6|1|A|G|1530","1VX6|1|A|G|1531","1VX6|1|A|U|1532","1VX6|1|A|U|1533","1VX6|1|A|U|1534","1VX6|1|A|A|1569","1VX6|1|A|U|1570","1VX6|1|A|U|1572","1VX6|1|A|C|1573","1VX6|1|A|C|1574"],"IL_3U5F_039":["3U5F|1|6|C|708","3U5F|1|6|C|709","3U5F|1|6|U|710","3U5F|1|6|U|711","3U5F|1|6|G|712","3U5F|1|6|C|726","3U5F|1|6|U|727","3U5F|1|6|U|728","3U5F|1|6|G|729","3U5F|1|6|G|730"]},"motif_id":"IL_28028.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-cWW-cWW"}, {"num_instances":2,"num_nucleotides":23,"alignment":{"IL_1NBS_003":["1NBS|1|A|C|184","1NBS|1|A|A|185","1NBS|1|A|C|186","1NBS|1|A|A|187","1NBS|1|A|G|188","1NBS|1|A|U|189","1NBS|1|A|G|190","1NBS|1|A|A|191","1NBS|1|A|C|192","1NBS|1|A|G|193","1NBS|1|A|A|195","1NBS|1|A|G|196","1NBS|1|A|U|197","1NBS|1|A|A|216","1NBS|1|A|G|217","1NBS|1|A|U|218","1NBS|1|A|G|219","1NBS|1|A|G|220","1NBS|1|A|A|221","1NBS|1|A|A|222","1NBS|1|A|C|223","1NBS|1|A|G|224","1NBS|1|A|G|226"],"IL_1NBS_010":["1NBS|1|B|C|184","1NBS|1|B|A|185","1NBS|1|B|C|186","1NBS|1|B|A|187","1NBS|1|B|G|188","1NBS|1|B|U|189","1NBS|1|B|G|190","1NBS|1|B|A|191","1NBS|1|B|C|192","1NBS|1|B|G|193","1NBS|1|B|A|195","1NBS|1|B|G|196","1NBS|1|B|U|197","1NBS|1|B|A|216","1NBS|1|B|G|217","1NBS|1|B|U|218","1NBS|1|B|G|219","1NBS|1|B|G|220","1NBS|1|B|A|221","1NBS|1|B|A|222","1NBS|1|B|C|223","1NBS|1|B|G|224","1NBS|1|B|G|226"]},"motif_id":"IL_28058.1","chainbreak":"13","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_28572.4","chainbreak":"13","common_name":"16S h18 kink-turn like motif","annotation":"Highly conserved, unique to 16S","bp_signature":"cWW-tWH-cSW-L-R-R-L-tHS-cWW"}, {"num_instances":1,"num_nucleotides":5,"alignment":{"IL_2QBG_059":["2QBG|1|B|U|1481","2QBG|1|B|G|1482","2QBG|1|B|C|1507","2QBG|1|B|A|1508","2QBG|1|B|G|1510"]},"motif_id":"IL_28644.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_1VX6_130":["1VX6|1|A|A|3583","1VX6|1|A|A|3585","1VX6|1|A|U|3586","1VX6|1|A|U|3587","1VX6|1|A|A|3588","1VX6|1|A|U|3589","1VX6|1|A|U|3591","1VX6|1|A|A|3613","1VX6|1|A|A|3614","1VX6|1|A|A|3615","1VX6|1|A|U|3616","1VX6|1|A|A|3617","1VX6|1|A|A|3618","1VX6|1|A|U|3619"]},"motif_id":"IL_29058.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31006.1","chainbreak":"7","common_name":"tSH-tHW-L-bif-cWW","annotation":"Ribozyme Ligase","bp_signature":"cWW-tSH-tHW-L-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31066.5","chainbreak":"7","common_name":"SSU Helix 44 (h44) extension","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3J7A_034":["3J7A|1|A|C|827","3J7A|1|A|A|828","3J7A|1|A|G|829","3J7A|1|A|A|832","3J7A|1|A|A|833","3J7A|1|A|A|834","3J7A|1|A|G|835","3J7A|1|A|U|845","3J7A|1|A|G|846"]},"motif_id":"IL_31160.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31555.7","chainbreak":"7","common_name":"Tandem sheared with inserted, unpaired purine","annotation":"Tandem sheared with inserted, unpaired purine","bp_signature":"cWW-R-tSH-tHS-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_1ET4_001":["1ET4|1|A|C|211","1ET4|1|A|G|212","1ET4|1|A|C|213","1ET4|1|A|A|214","1ET4|1|A|U|215","1ET4|1|A|A|216","1ET4|1|A|A|217","1ET4|1|A|C|218","1ET4|1|A|G|228","1ET4|1|A|C|229","1ET4|1|A|G|230"],"IL_1ET4_003":["1ET4|1|B|C|311","1ET4|1|B|G|312","1ET4|1|B|C|313","1ET4|1|B|A|314","1ET4|1|B|U|315","1ET4|1|B|A|316","1ET4|1|B|A|317","1ET4|1|B|C|318","1ET4|1|B|G|328","1ET4|1|B|C|329","1ET4|1|B|G|330"]},"motif_id":"IL_31707.1","chainbreak":"8","common_name":"Vitamin B12 aptamer","annotation":"","bp_signature":"cWW-L-L-L-cWW-L-bif-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2QBG_101":["2QBG|1|B|C|2652","2QBG|1|B|U|2653","2QBG|1|B|A|2654","2QBG|1|B|G|2655","2QBG|1|B|U|2656","2QBG|1|B|A|2657","2QBG|1|B|C|2658","2QBG|1|B|G|2663","2QBG|1|B|G|2664","2QBG|1|B|A|2665","2QBG|1|B|C|2666","2QBG|1|B|C|2667","2QBG|1|B|G|2668"]},"motif_id":"IL_31754.1","chainbreak":"7","common_name":"Sarcin-ricin H95 23S rRNA E.c.","annotation":"AC is annotated tHW because C is syn.","bp_signature":"cWW-cSW-tHW-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_31772.1","chainbreak":"7","common_name":"SRP Loop E-like motif | SSU Helix (23) h23 IL1","annotation":"From Signal Recognition Particle (SRP) RNA. This group has some motifs that don't belong together.","bp_signature":"cWW-L-R-cWW-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_32261.3","chainbreak":"7","common_name":"LSU Helix 89 (H89) IL2","annotation":"cSH platform","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":4,"num_nucleotides":6,"alignment":{"IL_3U5F_020":["3U5F|1|6|U|318","3U5F|1|6|U|319","3U5F|1|6|G|322","3U5F|1|6|A|323","3U5F|1|6|U|345","3U5F|1|6|G|346"],"IL_3J7A_017":["3J7A|1|A|U|324","3J7A|1|A|U|325","3J7A|1|A|G|328","3J7A|1|A|A|329","3J7A|1|A|U|351","3J7A|1|A|G|352"],"IL_1FJG_012":["1FJG|1|A|U|249","1FJG|1|A|A|250","1FJG|1|A|G|251","1FJG|1|A|U|252","1FJG|1|A|A|274","1FJG|1|A|G|275"],"IL_1S72_017":["1S72|1|0|A|602","1S72|1|0|A|603","1S72|1|0|G|604","1S72|1|0|C|605","1S72|1|0|G|554","1S72|1|0|U|555"]},"motif_id":"IL_32508.1","chainbreak":"4","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_32902.1","chainbreak":"4","common_name":"Stacked cWW-cWH pairs","annotation":"Stacked cWW-cWH pairs","bp_signature":"cWW-cWW-cWH-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_2AW7_053":["2AW7|1|A|G|1124","2AW7|1|A|U|1125","2AW7|1|A|U|1126","2AW7|1|A|G|1127","2AW7|1|A|C|1128","2AW7|1|A|G|1144","2AW7|1|A|A|1145","2AW7|1|A|A|1146","2AW7|1|A|C|1147","2AW7|1|A|U|1148","2AW7|1|A|C|1149"]},"motif_id":"IL_33217.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-cSW-cWW-R-R-cWW"}, {"num_instances":2,"num_nucleotides":7,"alignment":{"IL_4M4O_005":["4M4O|1|B|G|28","4M4O|1|B|U|29","4M4O|1|B|U|30","4M4O|1|B|A|31","4M4O|1|B|C|32","4M4O|1|B|G|36","4M4O|1|B|C|39"],"IL_4M6D_014":["4M6D|1|H|G|28","4M6D|1|H|U|29","4M6D|1|H|U|30","4M6D|1|H|A|31","4M6D|1|H|C|32","4M6D|1|H|G|36","4M6D|1|H|C|39"]},"motif_id":"IL_33842.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_34098.1","chainbreak":"5","common_name":"cWW with bulged base","annotation":"cWW with bulged base","bp_signature":"cWW-cWW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_34363.3","chainbreak":"5","common_name":"Kink-turn from 23S H42","annotation":"","bp_signature":"cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_34548.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHH-cSH-tWH-tHS-L-R-L-cWW"}, {"num_instances":3,"num_nucleotides":12,"alignment":{"IL_3Q3Z_004":["3Q3Z|1|A|C|16","3Q3Z|1|A|A|17","3Q3Z|1|A|A|18","3Q3Z|1|A|G|20","3Q3Z|1|A|A|21","3Q3Z|1|A|U|22","3Q3Z|1|A|G|23","3Q3Z|1|A|U|54","3Q3Z|1|A|U|55","3Q3Z|1|A|G|56","3Q3Z|1|A|A|57","3Q3Z|1|A|G|58"],"IL_3Q3Z_002":["3Q3Z|1|V|C|16","3Q3Z|1|V|A|17","3Q3Z|1|V|A|18","3Q3Z|1|V|G|20","3Q3Z|1|V|A|21","3Q3Z|1|V|U|22","3Q3Z|1|V|G|23","3Q3Z|1|V|U|54","3Q3Z|1|V|U|55","3Q3Z|1|V|G|56","3Q3Z|1|V|A|57","3Q3Z|1|V|G|58"],"IL_3NVI_001":["3NVI|1|E|G|15","3NVI|1|E|C|16","3NVI|1|E|G|17","3NVI|1|E|G|19","3NVI|1|E|A|20","3NVI|1|E|U|21","3NVI|1|E|G|22","3NVI|1|E|C|4","3NVI|1|E|U|5","3NVI|1|E|G|6","3NVI|1|E|A|7","3NVI|1|E|C|8"]},"motif_id":"IL_34628.2","chainbreak":"7","common_name":"Kink-turn","annotation":"","bp_signature":"cWW-tSS-L-tSH-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1VX6_024":["1VX6|1|A|U|529","1VX6|1|A|U|531","1VX6|1|A|C|532","1VX6|1|A|A|533","1VX6|1|A|U|619","1VX6|1|A|C|621","1VX6|1|A|U|622","1VX6|1|A|U|623","1VX6|1|A|C|624","1VX6|1|A|A|625","1VX6|1|A|A|626"]},"motif_id":"IL_34816.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWS-cSW-R-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4CUX_064":["4CUX|1|2|G|1271","4CUX|1|2|U|1272","4CUX|1|2|G|1273","4CUX|1|2|A|1275","4CUX|1|2|U|1276","4CUX|1|2|G|1277","4CUX|1|2|G|1278","4CUX|1|2|U|1430","4CUX|1|2|C|1431","4CUX|1|2|G|1433","4CUX|1|2|U|1434","4CUX|1|2|A|1436","4CUX|1|2|U|1437","4CUX|1|2|G|1438","4CUX|1|2|C|1439"]},"motif_id":"IL_35267.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-bif-L-cWH-cWS-cWW-R-R-R-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_4IOA_103":["4IOA|1|X|U|2822","4IOA|1|X|G|2823","4IOA|1|X|C|2824","4IOA|1|X|A|2825","4IOA|1|X|C|2826","4IOA|1|X|G|2827","4IOA|1|X|U|2840","4IOA|1|X|U|2841","4IOA|1|X|C|2842","4IOA|1|X|A|2843","4IOA|1|X|G|2844"],"IL_4QCN_107":["4QCN|1|A|U|2857","4QCN|1|A|G|2858","4QCN|1|A|U|2859","4QCN|1|A|A|2860","4QCN|1|A|A|2861","4QCN|1|A|G|2862","4QCN|1|A|U|2875","4QCN|1|A|U|2876","4QCN|1|A|G|2877","4QCN|1|A|A|2878","4QCN|1|A|G|2879"]},"motif_id":"IL_35558.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-L-L-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1VW3_095":["1VW3|1|A|U|3169","1VW3|1|A|U|3170","1VW3|1|A|A|3171","1VW3|1|A|U|3173","1VW3|1|A|A|3193","1VW3|1|A|U|3194","1VW3|1|A|A|3228"]},"motif_id":"IL_36006.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37053.3","chainbreak":"4","common_name":"Kink-turn from 23S H58","annotation":"","bp_signature":"cWW-tSH-tSH-tHS-tSS-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37104.6","chainbreak":"4","common_name":"Single sheared with bulged bases","annotation":"Single sheared with bulged bases","bp_signature":"cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37197.3","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_3U5H_020":["3U5H|1|5|G|517","3U5H|1|5|G|518","3U5H|1|5|U|520","3U5H|1|5|A|521","3U5H|1|5|A|522","3U5H|1|5|A|523","3U5H|1|5|U|524","3U5H|1|5|C|525","3U5H|1|5|G|567","3U5H|1|5|G|568","3U5H|1|5|A|569","3U5H|1|5|A|570","3U5H|1|5|U|571","3U5H|1|5|A|572","3U5H|1|5|C|573"]},"motif_id":"IL_37347.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-cHW-L-tHW-tHW-tHW-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37688.1","chainbreak":"8","common_name":"Stacked bases not quite making a basepair.","annotation":"Stacked bases not quite making a basepair.","bp_signature":"cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37914.2","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-cWW-tHW-cSW-tSW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_37964.1","chainbreak":"8","common_name":"Recurrent Sub-motif found in junctions","annotation":"IL_1S72_008 is part of complex K-turn. IL_3UXR_047 is part of 4WJ.","bp_signature":"cWW-tHS-R-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_4BPP_007":["4BPP|1|A|U|63","4BPP|1|A|U|64","4BPP|1|A|A|66","4BPP|1|A|G|67","4BPP|1|A|C|78","4BPP|1|A|G|79","4BPP|1|A|A|80","4BPP|1|A|A|81","4BPP|1|A|A|82"]},"motif_id":"IL_37970.1","chainbreak":"4","common_name":"tHS tHH bulge with S-turn | tSH-inserted-tHS","annotation":"More than one group. | More than one group. | More than one group. | one bulged base | one bulged base | Two motifs. 2nd is decoding site. Separate | Two Groups! Outlier has Bulged Base that H-bonds in minor groove.","bp_signature":"cWW-R-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_38078.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_38488.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cWW"}, {"num_instances":2,"num_nucleotides":9,"alignment":{"IL_1VW3_045":["1VW3|1|A|A|1492","1VW3|1|A|U|1493","1VW3|1|A|A|1515","1VW3|1|A|U|1516","1VW3|1|A|A|1517","1VW3|1|A|A|1518","1VW3|1|A|A|1519","1VW3|1|A|C|1520","1VW3|1|A|U|1521"],"IL_3Q1Q_002":["3Q1Q|1|B|U|216","3Q1Q|1|B|G|217","3Q1Q|1|B|U|61","3Q1Q|1|B|G|63","3Q1Q|1|B|A|64","3Q1Q|1|B|G|65","3Q1Q|1|B|C|66","3Q1Q|1|B|G|67","3Q1Q|1|B|G|68"]},"motif_id":"IL_39175.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39199.7","chainbreak":"2","common_name":"Hoogsteen-edge Platform, Single bulged base","annotation":"Some instances have additional bulged base","bp_signature":"cWW-tHS-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39212.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_39296.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW-R-R-tWS-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cWH-L-L-L-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":18,"alignment":{"IL_1S72_015":["1S72|1|0|G|487","1S72|1|0|U|488","1S72|1|0|A|489","1S72|1|0|C|490","1S72|1|0|C|491","1S72|1|0|G|501","1S72|1|0|A|502","1S72|1|0|G|503","1S72|1|0|G|504","1S72|1|0|C|505","1S72|1|0|G|506","1S72|1|0|A|507","1S72|1|0|A|508","1S72|1|0|A|509","1S72|1|0|A|511","1S72|1|0|G|512","1S72|1|0|A|513","1S72|1|0|C|515"]},"motif_id":"IL_39324.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_3U5H_023":["3U5H|1|5|G|680","3U5H|1|5|U|681","3U5H|1|5|U|682","3U5H|1|5|U|683","3U5H|1|5|G|684","3U5H|1|5|C|696","3U5H|1|5|A|697","3U5H|1|5|U|698","3U5H|1|5|A|699","3U5H|1|5|C|700"],"IL_4CUV_027":["4CUV|1|1|G|680","4CUV|1|1|U|681","4CUV|1|1|U|682","4CUV|1|1|U|683","4CUV|1|1|G|684","4CUV|1|1|C|696","4CUV|1|1|A|697","4CUV|1|1|U|698","4CUV|1|1|A|699","4CUV|1|1|C|700"]},"motif_id":"IL_39439.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cWW"}, {"num_instances":4,"num_nucleotides":9,"alignment":{"IL_2NOK_001":["2NOK|1|A|G|52","2NOK|1|A|A|53","2NOK|1|A|A|54","2NOK|1|A|C|55","2NOK|1|A|U|56","2NOK|1|A|A|57","2NOK|1|A|C|58","2NOK|1|B|G|110","2NOK|1|B|C|111"],"IL_2NOK_005":["2NOK|1|C|G|52","2NOK|1|C|A|53","2NOK|1|C|A|54","2NOK|1|C|C|55","2NOK|1|C|U|56","2NOK|1|C|A|57","2NOK|1|C|C|58","2NOK|1|D|G|110","2NOK|1|D|C|111"],"IL_2PN4_002":["2PN4|1|A|G|52","2PN4|1|A|A|53","2PN4|1|A|A|54","2PN4|1|A|C|55","2PN4|1|A|U|56","2PN4|1|A|A|57","2PN4|1|A|C|58","2PN4|1|B|G|110","2PN4|1|B|C|111"],"IL_3P59_001":["3P59|1|A|G|52","3P59|1|A|A|53","3P59|1|A|A|54","3P59|1|A|C|55","3P59|1|A|U|56","3P59|1|A|A|57","3P59|1|A|C|58","3P59|1|B|G|110","3P59|1|B|C|111"]},"motif_id":"IL_39526.4","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-cWW"}, {"num_instances":5,"num_nucleotides":6,"alignment":{"IL_3U5H_007":["3U5H|1|5|A|144","3U5H|1|5|G|145","3U5H|1|5|G|148","3U5H|1|5|U|149","3U5H|1|5|A|123","3U5H|1|5|U|124"],"IL_4A1B_004":["4A1B|1|1|A|144","4A1B|1|1|A|145","4A1B|1|1|G|148","4A1B|1|1|U|149","4A1B|1|1|A|121","4A1B|1|1|U|122"],"IL_4CUV_007":["4CUV|1|1|A|144","4CUV|1|1|G|145","4CUV|1|1|G|148","4CUV|1|1|U|149","4CUV|1|1|A|123","4CUV|1|1|U|124"],"IL_1S72_009":["1S72|1|0|C|260","1S72|1|0|A|261","1S72|1|0|G|264","1S72|1|0|U|265","1S72|1|0|A|248","1S72|1|0|G|249"],"IL_4BPP_061":["4BPP|1|A|A|1197","4BPP|1|A|A|1198","4BPP|1|A|G|1201","4BPP|1|A|A|1202","4BPP|1|A|U|1229","4BPP|1|A|U|1230"]},"motif_id":"IL_39980.2","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-cWW"}, {"num_instances":2,"num_nucleotides":5,"alignment":{"IL_3RW6_003":["3RW6|1|H|A|20","3RW6|1|H|G|21","3RW6|1|H|U|38","3RW6|1|H|A|40","3RW6|1|H|U|41"],"IL_3U5F_073":["3U5F|1|6|A|1345","3U5F|1|6|A|1348","3U5F|1|6|U|1377","3U5F|1|6|C|1379","3U5F|1|6|U|1380"]},"motif_id":"IL_40041.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_40053.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-tWW-L-tWW-tWH-cWW"}, {"num_instances":1,"num_nucleotides":22,"alignment":{"IL_4N0T_002":["4N0T|1|B|G|39","4N0T|1|B|A|40","4N0T|1|B|A|41","4N0T|1|B|A|42","4N0T|1|B|C|43","4N0T|1|B|A|44","4N0T|1|B|U|46","4N0T|1|B|A|47","4N0T|1|B|C|48","4N0T|1|B|G|50","4N0T|1|B|A|51","4N0T|1|B|G|52","4N0T|1|B|A|53","4N0T|1|B|A|56","4N0T|1|B|U|57","4N0T|1|B|C|58","4N0T|1|B|A|59","4N0T|1|B|U|88","4N0T|1|B|U|89","4N0T|1|B|U|90","4N0T|1|B|A|91","4N0T|1|B|C|92"]},"motif_id":"IL_40364.1","chainbreak":"17","common_name":"","annotation":"","bp_signature":"cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4A1B_060":["4A1B|1|1|A|1244","4A1B|1|1|U|1245","4A1B|1|1|A|1246","4A1B|1|1|C|1247","4A1B|1|1|G|1249","4A1B|1|1|A|1250","4A1B|1|1|C|1251","4A1B|1|1|A|1252","4A1B|1|1|G|1253","4A1B|1|1|C|1310","4A1B|1|1|C|1311","4A1B|1|1|G|1312","4A1B|1|1|A|1313","4A1B|1|1|A|1314","4A1B|1|1|U|1315"]},"motif_id":"IL_40527.1","chainbreak":"9","common_name":"Kink-turn","annotation":"Extra near cWW pair in one helix.","bp_signature":"cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1FJG_037":["1FJG|1|A|G|933","1FJG|1|A|A|935","1FJG|1|A|U|1380","1FJG|1|A|U|1381","1FJG|1|A|C|1382","1FJG|1|A|C|1383","1FJG|1|A|C|1384"]},"motif_id":"IL_40845.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cSW-cSH-R-cWW"}, {"num_instances":3,"num_nucleotides":8,"alignment":{"IL_4CUV_107":["4CUV|1|1|A|2520","4CUV|1|1|U|2521","4CUV|1|1|A|2523","4CUV|1|1|A|2524","4CUV|1|1|G|2525","4CUV|1|1|C|2526","4CUV|1|1|G|2584","4CUV|1|1|U|2587"],"IL_3U5H_101":["3U5H|1|5|A|2520","3U5H|1|5|U|2521","3U5H|1|5|A|2523","3U5H|1|5|A|2524","3U5H|1|5|G|2525","3U5H|1|5|C|2526","3U5H|1|5|G|2584","3U5H|1|5|U|2587"],"IL_4A1B_099":["4A1B|1|1|G|2515","4A1B|1|1|U|2516","4A1B|1|1|A|2518","4A1B|1|1|A|2519","4A1B|1|1|G|2520","4A1B|1|1|A|2521","4A1B|1|1|U|2573","4A1B|1|1|C|2576"]},"motif_id":"IL_40892.2","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWS-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_40987.1","chainbreak":"6","common_name":"23S H91 IL | Single-Base Intercalation Site","annotation":"More than one motif","bp_signature":"cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41027.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-bif-R-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_4A1B_068":["4A1B|1|1|A|1585","4A1B|1|1|C|1586","4A1B|1|1|A|1588","4A1B|1|1|G|1589","4A1B|1|1|C|1604","4A1B|1|1|G|1605","4A1B|1|1|U|1606"]},"motif_id":"IL_41139.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_1VX6_149":["1VX6|1|C|A|122","1VX6|1|C|A|123","1VX6|1|C|U|138","1VX6|1|C|A|139","1VX6|1|C|G|140","1VX6|1|C|U|141"]},"motif_id":"IL_41215.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW"}, {"num_instances":1,"num_nucleotides":17,"alignment":{"IL_4CUV_025":["4CUV|1|1|G|530","4CUV|1|1|G|531","4CUV|1|1|A|532","4CUV|1|1|A|533","4CUV|1|1|G|535","4CUV|1|1|U|536","4CUV|1|1|A|537","4CUV|1|1|G|538","4CUV|1|1|U|553","4CUV|1|1|A|554","4CUV|1|1|U|555","4CUV|1|1|U|556","4CUV|1|1|A|557","4CUV|1|1|A|559","4CUV|1|1|G|560","4CUV|1|1|C|561","4CUV|1|1|C|562"]},"motif_id":"IL_41371.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW-bif-tHW-cWH-cSH-cWH-L-cSH-R-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1VW3_021":["1VW3|1|A|G|666","1VW3|1|A|U|667","1VW3|1|A|A|668","1VW3|1|A|G|669","1VW3|1|A|C|677","1VW3|1|A|A|678","1VW3|1|A|C|682"]},"motif_id":"IL_41516.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41766.9","chainbreak":"4","common_name":"Tandem cWW pairs (Not AU or GC)","annotation":"","bp_signature":"cWW-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_41920.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_42891.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-cSH-L-L-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_4IOA_107":["4IOA|1|Y|C|35","4IOA|1|Y|A|36","4IOA|1|Y|C|37","4IOA|1|Y|C|38","4IOA|1|Y|C|39","4IOA|1|Y|C|40","4IOA|1|Y|G|46","4IOA|1|Y|C|49","4IOA|1|Y|U|50","4IOA|1|Y|G|51"],"IL_4CUX_071":["4CUX|1|2|C|1376","4CUX|1|2|U|1377","4CUX|1|2|U|1378","4CUX|1|2|C|1379","4CUX|1|2|U|1380","4CUX|1|2|U|1381","4CUX|1|2|A|1344","4CUX|1|2|A|1345","4CUX|1|2|A|1348","4CUX|1|2|G|1349"]},"motif_id":"IL_43363.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-cWW"}, {"num_instances":4,"num_nucleotides":9,"alignment":{"IL_1FJG_061":["1FJG|1|A|C|1466","1FJG|1|A|G|1467","1FJG|1|A|A|1468","1FJG|1|A|G|1469","1FJG|1|A|C|1431","1FJG|1|A|G|1432","1FJG|1|A|A|1433","1FJG|1|A|A|1434","1FJG|1|A|G|1435"],"IL_2QBG_061":["2QBG|1|B|C|1526","2QBG|1|B|G|1527","2QBG|1|B|A|1528","2QBG|1|B|G|1529","2QBG|1|B|U|1542","2QBG|1|B|G|1543","2QBG|1|B|A|1544","2QBG|1|B|A|1545","2QBG|1|B|G|1546"],"IL_2QBG_075":["2QBG|1|B|U|1864","2QBG|1|B|U|1865","2QBG|1|B|A|1866","2QBG|1|B|G|1867","2QBG|1|B|C|1874","2QBG|1|B|G|1875","2QBG|1|B|A|1876","2QBG|1|B|A|1877","2QBG|1|B|G|1878"],"IL_2ZY6_001":["2ZY6|1|A|A|7","2ZY6|1|A|U|8","2ZY6|1|A|A|9","2ZY6|1|A|G|10","2ZY6|1|A|C|25","2ZY6|1|A|G|26","2ZY6|1|A|A|27","2ZY6|1|A|G|28","2ZY6|1|A|U|29"]},"motif_id":"IL_43727.1","chainbreak":"4","common_name":"tSH-inserted-tHS | tHS tHH bulge with S-turn | tSH-inserted-tHS","annotation":"Two Groups! Outlier has Bulged Base that H-bonds in minor groove. | More than one group. | More than one group. | More than one group. | one bulged base | one bulged base | Two motifs. 2nd is decoding site. Separate | Two Groups! Outlier has Bulged Base that H-bonds in minor groove.","bp_signature":"cWW-tSH-tWH-tHS-cWW"}, {"num_instances":3,"num_nucleotides":12,"alignment":{"IL_2VPL_001":["2VPL|1|B|G|10","2VPL|1|B|G|11","2VPL|1|B|A|12","2VPL|1|B|G|13","2VPL|1|B|C|33","2VPL|1|B|G|34","2VPL|1|B|A|35","2VPL|1|B|G|36","2VPL|1|B|A|37","2VPL|1|B|A|38","2VPL|1|B|A|39","2VPL|1|B|C|40"],"IL_2HW8_001":["2HW8|1|B|G|10","2HW8|1|B|G|11","2HW8|1|B|A|12","2HW8|1|B|G|13","2HW8|1|B|C|22","2HW8|1|B|G|23","2HW8|1|B|C|24","2HW8|1|B|G|25","2HW8|1|B|A|26","2HW8|1|B|A|27","2HW8|1|B|A|28","2HW8|1|B|C|29"],"IL_1U63_001":["1U63|1|B|G|10","1U63|1|B|G|11","1U63|1|B|A|12","1U63|1|B|G|13","1U63|1|B|C|33","1U63|1|B|G|34","1U63|1|B|A|35","1U63|1|B|G|36","1U63|1|B|A|37","1U63|1|B|A|38","1U63|1|B|A|39","1U63|1|B|C|40"]},"motif_id":"IL_43946.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSH-tSS-tSS-R-R-R-R-cWW"}, {"num_instances":2,"num_nucleotides":7,"alignment":{"IL_3U5H_132":["3U5H|1|5|C|3225","3U5H|1|5|A|3226","3U5H|1|5|A|3227","3U5H|1|5|C|3228","3U5H|1|5|G|3229","3U5H|1|5|U|3258","3U5H|1|5|G|3260"],"IL_4CUV_138":["4CUV|1|1|C|3225","4CUV|1|1|A|3226","4CUV|1|1|A|3227","4CUV|1|1|C|3228","4CUV|1|1|G|3229","4CUV|1|1|U|3258","4CUV|1|1|G|3260"]},"motif_id":"IL_44092.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_44540.7","chainbreak":"5","common_name":"Sugar-edge, 1-base platform, consensus tHS","annotation":"","bp_signature":"cWW-cSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_44847.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-L-L-L-cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_3U5F_038":["3U5F|1|6|G|703","3U5F|1|6|C|704","3U5F|1|6|U|705","3U5F|1|6|A|706","3U5F|1|6|A|707","3U5F|1|6|C|708","3U5F|1|6|G|730","3U5F|1|6|C|731","3U5F|1|6|G|732","3U5F|1|6|A|733","3U5F|1|6|A|734","3U5F|1|6|C|735"],"IL_4A1B_025":["4A1B|1|1|G|562","4A1B|1|1|G|563","4A1B|1|1|U|566","4A1B|1|1|C|567","4A1B|1|1|A|568","4A1B|1|1|C|569","4A1B|1|1|G|600","4A1B|1|1|A|601","4A1B|1|1|A|602","4A1B|1|1|A|603","4A1B|1|1|A|604","4A1B|1|1|C|605"]},"motif_id":"IL_44977.1","chainbreak":"6","common_name":"LSU H58 IL2 H.m. | SSU Helix (23) h23 IL1","annotation":"","bp_signature":"cWW-cWW-L-R-R-L-cWW-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_1VW3_036":["1VW3|1|A|U|1237","1VW3|1|A|G|1238","1VW3|1|A|A|1239","1VW3|1|A|U|1240","1VW3|1|A|A|1241","1VW3|1|A|A|1242","1VW3|1|A|A|1244","1VW3|1|A|U|1268","1VW3|1|A|G|1269","1VW3|1|A|U|1270","1VW3|1|A|A|1271","1VW3|1|A|U|1273","1VW3|1|A|A|1274","1VW3|1|A|A|1275"]},"motif_id":"IL_45432.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHW-tWH-L-R-R-L-cWW"}, {"num_instances":3,"num_nucleotides":7,"alignment":{"IL_3J7A_048":["3J7A|1|A|C|1103","3J7A|1|A|G|1104","3J7A|1|A|A|1105","3J7A|1|A|U|1196","3J7A|1|A|U|1198","3J7A|1|A|U|1200","3J7A|1|A|G|1202"],"IL_3U5F_054":["3U5F|1|6|C|1034","3U5F|1|6|G|1035","3U5F|1|6|A|1036","3U5F|1|6|U|1095","3U5F|1|6|U|1097","3U5F|1|6|U|1099","3U5F|1|6|G|1101"],"IL_4CUX_051":["4CUX|1|2|C|1034","4CUX|1|2|G|1035","4CUX|1|2|A|1036","4CUX|1|2|U|1095","4CUX|1|2|U|1097","4CUX|1|2|U|1099","4CUX|1|2|G|1101"]},"motif_id":"IL_45592.2","chainbreak":"3","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-L-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_45593.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_1LNG_001":["1LNG|1|B|G|152","1LNG|1|B|A|153","1LNG|1|B|G|154","1LNG|1|B|U|175","1LNG|1|B|A|176","1LNG|1|B|A|177","1LNG|1|B|C|178"]},"motif_id":"IL_45617.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW"}, {"num_instances":2,"num_nucleotides":13,"alignment":{"IL_1VBY_001":["1VBY|1|B|C|107","1VBY|1|B|A|108","1VBY|1|B|U|109","1VBY|1|B|G|110","1VBY|1|B|G|111","1VBY|1|B|U|112","1VBY|1|B|C|113","1VBY|1|B|C|114","1VBY|1|B|C|115","1VBY|1|B|A|116","1VBY|1|B|G|117","1VBY|1|B|C|130","1VBY|1|B|G|131"],"IL_3NKB_001":["3NKB|1|A|C|8","3NKB|1|A|A|9","3NKB|1|B|G|10","3NKB|1|B|G|11","3NKB|1|B|U|12","3NKB|1|B|C|13","3NKB|1|B|C|14","3NKB|1|B|G|15","3NKB|1|B|C|16","3NKB|1|B|A|17","3NKB|1|B|G|18","3NKB|1|B|C|30","3NKB|1|B|G|31"]},"motif_id":"IL_46435.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2AW7_056":["2AW7|1|A|U|1247","2AW7|1|A|A|1248","2AW7|1|A|C|1249","2AW7|1|A|A|1250","2AW7|1|A|A|1251","2AW7|1|A|A|1252","2AW7|1|A|G|1253","2AW7|1|A|C|1284","2AW7|1|A|A|1285","2AW7|1|A|A|1287","2AW7|1|A|A|1288","2AW7|1|A|A|1289","2AW7|1|A|G|1290"]},"motif_id":"IL_47687.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tWH-tWH-tWH-L-R-L-tWW-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_4CUX_019":["4CUX|1|2|U|311","4CUX|1|2|A|312","4CUX|1|2|C|314","4CUX|1|2|A|315","4CUX|1|2|A|316","4CUX|1|2|C|317","4CUX|1|2|G|347","4CUX|1|2|U|348","4CUX|1|2|U|349","4CUX|1|2|U|350","4CUX|1|2|A|352","4CUX|1|2|A|353","4CUX|1|2|C|354","4CUX|1|2|G|355"]},"motif_id":"IL_47702.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-R-tWH-L-R-R-R-R-L-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_4CUX_060":["4CUX|1|2|A|1224","4CUX|1|2|U|1225","4CUX|1|2|A|1226","4CUX|1|2|A|1227","4CUX|1|2|G|1229","4CUX|1|2|A|1230","4CUX|1|2|U|1257","4CUX|1|2|U|1258","4CUX|1|2|U|1259"]},"motif_id":"IL_48036.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_48070.1","chainbreak":"7","common_name":"C-loop","annotation":"","bp_signature":"cWW-tHW-cSW-tSW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_48256.1","chainbreak":"7","common_name":"1-3 bulged nucleotides","annotation":"1-3 bulged nucleotides","bp_signature":"cWW-cWW"}, {"num_instances":1,"num_nucleotides":5,"alignment":{"IL_1VX6_120":["1VX6|1|A|U|3360","1VX6|1|A|A|3362","1VX6|1|A|U|3376","1VX6|1|A|A|3377","1VX6|1|A|A|3379"]},"motif_id":"IL_48268.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-cWW"}, {"num_instances":4,"num_nucleotides":12,"alignment":{"IL_4B5R_002":["4B5R|1|A|G|17","4B5R|1|A|G|18","4B5R|1|A|G|19","4B5R|1|A|A|20","4B5R|1|A|G|21","4B5R|1|A|C|31","4B5R|1|A|G|32","4B5R|1|A|A|33","4B5R|1|A|G|35","4B5R|1|A|A|36","4B5R|1|A|A|37","4B5R|1|A|C|38"],"IL_3UMY_004":["3UMY|1|B|G|2155","3UMY|1|B|G|2156","3UMY|1|B|G|2157","3UMY|1|B|A|2158","3UMY|1|B|G|2159","3UMY|1|B|C|2129","3UMY|1|B|U|2130","3UMY|1|B|G|2131","3UMY|1|B|G|2133","3UMY|1|B|A|2134","3UMY|1|B|A|2135","3UMY|1|B|C|2136"],"IL_4BW0_001":["4BW0|1|A|G|3","4BW0|1|A|G|4","4BW0|1|A|G|5","4BW0|1|A|A|6","4BW0|1|A|G|7","4BW0|1|A|C|16","4BW0|1|A|G|17","4BW0|1|A|A|18","4BW0|1|A|G|20","4BW0|1|A|A|21","4BW0|1|A|A|22","4BW0|1|A|C|23"],"IL_4IOA_052":["4IOA|1|X|U|1426","4IOA|1|X|G|1427","4IOA|1|X|G|1428","4IOA|1|X|A|1429","4IOA|1|X|G|1430","4IOA|1|X|C|1598","4IOA|1|X|G|1599","4IOA|1|X|U|1600","4IOA|1|X|G|1602","4IOA|1|X|A|1603","4IOA|1|X|A|1604","4IOA|1|X|A|1605"]},"motif_id":"IL_48918.3","chainbreak":"5","common_name":"Kink-turn variant","annotation":"","bp_signature":"cWW-tSH-tSH-tHS-tSS-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_49203.1","chainbreak":"5","common_name":"Double sheared with wobble cWW.","annotation":"Two different groups","bp_signature":"cWW-cWW-cSW-cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_49493.7","chainbreak":"5","common_name":"Sarcin-ricin Parent Motif - bacterial LSU H95 IL","annotation":"Has only one non-WC pair (tSH) between tHH and cWW.","bp_signature":"cWW-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_1FJG_017":["1FJG|1|A|G|409","1FJG|1|A|G|410","1FJG|1|A|A|411","1FJG|1|A|G|413","1FJG|1|A|A|414","1FJG|1|A|A|415","1FJG|1|A|G|416","1FJG|1|A|U|427","1FJG|1|A|G|428","1FJG|1|A|U|429","1FJG|1|A|A|430","1FJG|1|A|A|431","1FJG|1|A|A|432","1FJG|1|A|C|433"],"IL_2AW7_020":["2AW7|1|A|U|409","2AW7|1|A|G|410","2AW7|1|A|A|411","2AW7|1|A|G|413","2AW7|1|A|A|414","2AW7|1|A|A|415","2AW7|1|A|G|416","2AW7|1|A|U|427","2AW7|1|A|G|428","2AW7|1|A|U|429","2AW7|1|A|A|430","2AW7|1|A|A|431","2AW7|1|A|A|432","2AW7|1|A|G|433"]},"motif_id":"IL_50521.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-cWH-tWH-tSS-tHW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_50787.1","chainbreak":"7","common_name":"tSH-tHW-bulge","annotation":"","bp_signature":"cWW-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_51342.1","chainbreak":"7","common_name":"Non-canonical cWW with inserted stacked base.","annotation":"Non-canonical cWW with inserted stacked base.","bp_signature":"cWW-L-cWW-cWW"}, {"num_instances":6,"num_nucleotides":10,"alignment":{"IL_1VX6_137":["1VX6|1|A|U|3724","1VX6|1|A|G|3725","1VX6|1|A|U|3726","1VX6|1|A|A|3727","1VX6|1|A|A|3728","1VX6|1|A|A|3729","1VX6|1|A|U|3759","1VX6|1|A|U|3760","1VX6|1|A|A|3762","1VX6|1|A|G|3763"],"IL_3U5H_139":["3U5H|1|5|U|3332","3U5H|1|5|G|3333","3U5H|1|5|U|3334","3U5H|1|5|A|3335","3U5H|1|5|A|3336","3U5H|1|5|G|3337","3U5H|1|5|C|3367","3U5H|1|5|U|3368","3U5H|1|5|A|3370","3U5H|1|5|G|3371"],"IL_4A1B_130":["4A1B|1|1|U|3290","4A1B|1|1|G|3291","4A1B|1|1|U|3292","4A1B|1|1|A|3293","4A1B|1|1|A|3294","4A1B|1|1|G|3295","4A1B|1|1|C|3323","4A1B|1|1|U|3324","4A1B|1|1|A|3326","4A1B|1|1|G|3327"],"IL_4CUV_145":["4CUV|1|1|U|3332","4CUV|1|1|G|3333","4CUV|1|1|U|3334","4CUV|1|1|A|3335","4CUV|1|1|A|3336","4CUV|1|1|G|3337","4CUV|1|1|C|3367","4CUV|1|1|U|3368","4CUV|1|1|A|3370","4CUV|1|1|G|3371"],"IL_1S72_097":["1S72|1|0|U|2864","1S72|1|0|G|2865","1S72|1|0|U|2866","1S72|1|0|G|2867","1S72|1|0|C|2868","1S72|1|0|G|2869","1S72|1|0|U|2888","1S72|1|0|U|2889","1S72|1|0|A|2891","1S72|1|0|G|2892"],"IL_2QBG_109":["2QBG|1|B|U|2847","2QBG|1|B|G|2848","2QBG|1|B|U|2849","2QBG|1|B|A|2850","2QBG|1|B|A|2851","2QBG|1|B|G|2852","2QBG|1|B|U|2865","2QBG|1|B|U|2866","2QBG|1|B|A|2868","2QBG|1|B|G|2869"]},"motif_id":"IL_51439.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-L-tHH-cWW"}, {"num_instances":1,"num_nucleotides":24,"alignment":{"IL_4P9R_001":["4P9R|1|A|U|3","4P9R|1|A|C|4","4P9R|1|A|G|263","4P9R|1|A|G|264","4P9R|1|A|U|265","4P9R|1|A|U|266","4P9R|1|A|G|267","4P9R|1|A|A|268","4P9R|1|A|A|269","4P9R|1|A|C|270","4P9R|1|A|A|271","4P9R|1|A|C|272","4P9R|1|A|U|273","4P9R|1|A|U|274","4P9R|1|A|A|275","4P9R|1|A|A|276","4P9R|1|A|U|277","4P9R|1|A|U|278","4P9R|1|A|G|279","4P9R|1|A|G|280","4P9R|1|A|G|281","4P9R|1|A|U|282","4P9R|1|A|U|283","4P9R|1|A|A|284"]},"motif_id":"IL_51572.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-R-R-tWS-R-R-R-R-R-R-R-R-R-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_51576.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-L-tHS-L-R-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_52024.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW-tHS-cWW"}, {"num_instances":1,"num_nucleotides":36,"alignment":{"IL_4IOA_040":["4IOA|1|X|G|1066","4IOA|1|X|G|1067","4IOA|1|X|A|1068","4IOA|1|X|G|1069","4IOA|1|X|G|1070","4IOA|1|X|U|1071","4IOA|1|X|G|1073","4IOA|1|X|C|1087","4IOA|1|X|A|1088","4IOA|1|X|C|1089","4IOA|1|X|C|1090","4IOA|1|X|C|1091","4IOA|1|X|U|1092","4IOA|1|X|U|1093","4IOA|1|X|C|1094","4IOA|1|X|A|1095","4IOA|1|X|A|1096","4IOA|1|X|A|1097","4IOA|1|X|G|1098","4IOA|1|X|A|1099","4IOA|1|X|G|1100","4IOA|1|X|U|1101","4IOA|1|X|G|1102","4IOA|1|X|C|1103","4IOA|1|X|G|1104","4IOA|1|X|U|1105","4IOA|1|X|A|1106","4IOA|1|X|A|1107","4IOA|1|X|U|1108","4IOA|1|X|A|1109","4IOA|1|X|G|1110","4IOA|1|X|C|1111","4IOA|1|X|U|1112","4IOA|1|X|C|1113","4IOA|1|X|A|1114","4IOA|1|X|C|1115"]},"motif_id":"IL_52610.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_1FJG_049":["1FJG|1|A|U|1247","1FJG|1|A|A|1248","1FJG|1|A|C|1249","1FJG|1|A|A|1250","1FJG|1|A|A|1251","1FJG|1|A|A|1252","1FJG|1|A|G|1253","1FJG|1|A|C|1284","1FJG|1|A|A|1285","1FJG|1|A|A|1286","1FJG|1|A|A|1287","1FJG|1|A|A|1288","1FJG|1|A|A|1289","1FJG|1|A|G|1290"],"IL_3U5F_076":["3U5F|1|6|G|1480","3U5F|1|6|C|1482","3U5F|1|6|A|1483","3U5F|1|6|G|1484","3U5F|1|6|C|1485","3U5F|1|6|G|1486","3U5F|1|6|A|1487","3U5F|1|6|U|1519","3U5F|1|6|U|1520","3U5F|1|6|U|1522","3U5F|1|6|A|1524","3U5F|1|6|A|1525","3U5F|1|6|A|1526","3U5F|1|6|C|1527"]},"motif_id":"IL_52940.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-L-L-L-tWW-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_2QBG_028":["2QBG|1|B|A|844","2QBG|1|B|A|845","2QBG|1|B|U|846","2QBG|1|B|U|847","2QBG|1|B|C|848","2QBG|1|B|G|930","2QBG|1|B|U|932","2QBG|1|B|A|933","2QBG|1|B|U|934"]},"motif_id":"IL_52958.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_53587.1","chainbreak":"5","common_name":"IL_53587.1 is a mixed group with either one cSW pair or an intercalated base","annotation":"IL_53587.1 is a mixed group with either one cSW pair or an intercalated base","bp_signature":"cWW-cSW-cWW"}, {"num_instances":9,"num_nucleotides":11,"alignment":{"IL_1VW3_017":["1VW3|1|A|G|583","1VW3|1|A|A|584","1VW3|1|A|A|585","1VW3|1|A|A|586","1VW3|1|A|G|587","1VW3|1|A|C|690","1VW3|1|A|A|691","1VW3|1|A|A|693","1VW3|1|A|U|694","1VW3|1|A|A|695","1VW3|1|A|C|697"],"IL_4QCN_018":["4QCN|1|A|G|721","4QCN|1|A|A|722","4QCN|1|A|A|723","4QCN|1|A|A|724","4QCN|1|A|C|725","4QCN|1|A|G|846","4QCN|1|A|A|847","4QCN|1|A|A|849","4QCN|1|A|U|850","4QCN|1|A|A|851","4QCN|1|A|C|853"],"IL_2QBG_021":["2QBG|1|B|G|674","2QBG|1|B|A|675","2QBG|1|B|A|676","2QBG|1|B|A|677","2QBG|1|B|C|678","2QBG|1|B|G|799","2QBG|1|B|A|800","2QBG|1|B|A|802","2QBG|1|B|U|803","2QBG|1|B|A|804","2QBG|1|B|C|806"],"IL_4A1B_035":["4A1B|1|1|G|830","4A1B|1|1|A|831","4A1B|1|1|A|832","4A1B|1|1|A|833","4A1B|1|1|G|834","4A1B|1|1|C|956","4A1B|1|1|U|957","4A1B|1|1|G|959","4A1B|1|1|U|960","4A1B|1|1|A|961","4A1B|1|1|C|963"],"IL_1S72_025":["1S72|1|0|G|765","1S72|1|0|A|766","1S72|1|0|A|767","1S72|1|0|U|768","1S72|1|0|C|769","1S72|1|0|G|892","1S72|1|0|C|893","1S72|1|0|A|895","1S72|1|0|C|896","1S72|1|0|A|897","1S72|1|0|C|899"],"IL_4IOA_014":["4IOA|1|X|G|687","4IOA|1|X|A|688","4IOA|1|X|A|689","4IOA|1|X|A|690","4IOA|1|X|C|691","4IOA|1|X|G|812","4IOA|1|X|A|813","4IOA|1|X|A|815","4IOA|1|X|U|816","4IOA|1|X|A|817","4IOA|1|X|C|819"],"IL_4CUV_033":["4CUV|1|1|G|805","4CUV|1|1|A|806","4CUV|1|1|A|807","4CUV|1|1|A|808","4CUV|1|1|G|809","4CUV|1|1|C|931","4CUV|1|1|U|932","4CUV|1|1|G|934","4CUV|1|1|U|935","4CUV|1|1|A|936","4CUV|1|1|C|938"],"IL_3U5H_029":["3U5H|1|5|G|805","3U5H|1|5|A|806","3U5H|1|5|A|807","3U5H|1|5|A|808","3U5H|1|5|G|809","3U5H|1|5|C|931","3U5H|1|5|U|932","3U5H|1|5|G|934","3U5H|1|5|U|935","3U5H|1|5|A|936","3U5H|1|5|C|938"],"IL_1VX6_035":["1VX6|1|A|G|924","1VX6|1|A|A|925","1VX6|1|A|G|926","1VX6|1|A|A|927","1VX6|1|A|G|928","1VX6|1|A|C|1050","1VX6|1|A|U|1051","1VX6|1|A|U|1053","1VX6|1|A|U|1054","1VX6|1|A|A|1055","1VX6|1|A|C|1057"]},"motif_id":"IL_53635.6","chainbreak":"5","common_name":"LSU Helix 32 (H32) IL","annotation":"","bp_signature":"cWW-R-tHW-tHW-tWW-cWW"}, {"num_instances":5,"num_nucleotides":8,"alignment":{"IL_3BNP_003":["3BNP|1|B|C|5","3BNP|1|B|A|6","3BNP|1|B|C|7","3BNP|1|B|C|8","3BNP|1|A|G|14","3BNP|1|A|C|15","3BNP|1|A|A|16","3BNP|1|A|G|18"],"IL_3BNP_002":["3BNP|1|A|C|6","3BNP|1|A|A|7","3BNP|1|A|C|8","3BNP|1|A|C|9","3BNP|1|B|G|13","3BNP|1|B|C|14","3BNP|1|B|A|15","3BNP|1|B|G|17"],"IL_3BNQ_005":["3BNQ|1|B|C|7","3BNQ|1|B|A|8","3BNQ|1|B|C|9","3BNQ|1|B|C|10","3BNQ|1|A|G|15","3BNQ|1|A|C|16","3BNQ|1|A|A|17","3BNQ|1|A|G|19"],"IL_2QBG_057":["2QBG|1|B|U|1468","2QBG|1|B|A|1469","2QBG|1|B|A|1470","2QBG|1|B|G|1471","2QBG|1|B|U|1520","2QBG|1|B|G|1521","2QBG|1|B|A|1522","2QBG|1|B|G|1524"],"IL_4QCN_042":["4QCN|1|A|U|1286","4QCN|1|A|A|1287","4QCN|1|A|A|1288","4QCN|1|A|G|1289","4QCN|1|A|C|1247","4QCN|1|A|G|1248","4QCN|1|A|A|1249","4QCN|1|A|G|1251"]},"motif_id":"IL_55114.3","chainbreak":"4","common_name":"Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif","annotation":"Two different groups. Double S-turn is from TPP riboswitch and Decoding Site from Human.","bp_signature":"cWW-L-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_55210.1","chainbreak":"4","common_name":"1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW","annotation":"More than one motif. Poor superposition of instances! | Large bulge loop that makes 3\u00b0 Interactions | Large bulge loop that makes 3\u00b0 Interactions | More than one motif. Poor superposition of instances! | Large bulge loop that makes 3\u00b0 Interactions | Large bulge loop that makes 3\u00b0 Interactions","bp_signature":"cWW-R-R-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2QBG_056":["2QBG|1|B|C|1437","2QBG|1|B|U|1438","2QBG|1|B|A|1439","2QBG|1|B|U|1440","2QBG|1|B|A|1551","2QBG|1|B|A|1552","2QBG|1|B|A|1553","2QBG|1|B|G|1555"]},"motif_id":"IL_55649.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tWH-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_55938.7","chainbreak":"4","common_name":"LSU Helix 89 (H89) IL2. cSH Platform.","annotation":"In 1S72 C2493 is part of motif. In 3UXR G2458 is part of motif. This group is heterogeneous. More than one motif here.","bp_signature":"cWW-cWW-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_57285.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-tWW-L-L-L-cWS-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_1VX6_010":["1VX6|1|A|U|178","1VX6|1|A|G|179","1VX6|1|A|C|180","1VX6|1|A|U|182","1VX6|1|A|U|183","1VX6|1|A|A|248","1VX6|1|A|U|249","1VX6|1|A|U|250","1VX6|1|A|A|252"]},"motif_id":"IL_57334.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_57625.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1OOA_003":["1OOA|1|D|C|5","1OOA|1|D|U|6","1OOA|1|D|U|7","1OOA|1|D|G|8","1OOA|1|D|A|9","1OOA|1|D|A|10","1OOA|1|D|U|21","1OOA|1|D|G|22","1OOA|1|D|G|23","1OOA|1|D|C|24","1OOA|1|D|G|25"]},"motif_id":"IL_57977.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_58261.1","chainbreak":"6","common_name":"SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif","annotation":"From Signal Recognition Particle (SRP) RNA. This group has some motifs that don't belong together. | Two groups. Outliers have unpaired A stacked in the motif.","bp_signature":"cWW-cWW-tSH-tHS-tHS-cWW"}, {"num_instances":1,"num_nucleotides":19,"alignment":{"IL_4CUX_098":["4CUX|1|Z|U|6100","4CUX|1|Z|U|6101","4CUX|1|Z|A|6102","4CUX|1|Z|U|6113","4CUX|1|Z|U|6114","4CUX|1|Z|U|6115","4CUX|1|Z|A|6116","4CUX|1|Z|C|6117","4CUX|1|Z|G|6118","4CUX|1|Z|U|6119","4CUX|1|Z|U|6120","4CUX|1|Z|C|6121","4CUX|1|Z|C|6122","4CUX|1|Z|A|6123","4CUX|1|Z|G|6124","4CUX|1|Z|G|6125","4CUX|1|Z|A|6126","4CUX|1|Z|U|6127","4CUX|1|Z|G|6128"]},"motif_id":"IL_58270.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_59276.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cSH-tWH-cSH-tWH-cSH-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_59563.2","chainbreak":"6","common_name":"Sarcin-ricin motif with syn G","annotation":"Has Syn G resulting in UG tSW instead of tSH.","bp_signature":"cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":25,"alignment":{"IL_4CUV_058":["4CUV|1|1|G|1194","4CUV|1|1|A|1195","4CUV|1|1|A|1197","4CUV|1|1|C|1198","4CUV|1|1|C|1199","4CUV|1|1|A|1200","4CUV|1|1|C|1201","4CUV|1|1|A|1202","4CUV|1|1|A|1203","4CUV|1|1|A|1204","4CUV|1|1|A|1205","4CUV|1|1|U|1299","4CUV|1|1|G|1300","4CUV|1|1|A|1301","4CUV|1|1|A|1303","4CUV|1|1|A|1304","4CUV|1|1|G|1306","4CUV|1|1|G|1307","4CUV|1|1|A|1308","4CUV|1|1|U|1309","4CUV|1|1|G|1310","4CUV|1|1|G|1311","4CUV|1|1|C|1312","4CUV|1|1|G|1313","4CUV|1|1|C|1314"]},"motif_id":"IL_59907.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_2AW7_038":["2AW7|1|A|U|684","2AW7|1|A|G|685","2AW7|1|A|U|686","2AW7|1|A|A|687","2AW7|1|A|G|688","2AW7|1|A|C|699","2AW7|1|A|G|700","2AW7|1|A|U|701","2AW7|1|A|G|703","2AW7|1|A|A|704","2AW7|1|A|G|705","2AW7|1|A|A|706"]},"motif_id":"IL_59934.1","chainbreak":"5","common_name":"SSU Helix 23 (h23) Kink-turn E. coli","annotation":"","bp_signature":"cWW-tSH-tWH-tHS-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_60760.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_61513.1","chainbreak":"5","common_name":"One or more bulged nucleotides","annotation":"One or more bulged nucleotides","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62008.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSS-R-bif-L-L-L-L-L-cHW-bif-L-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1VW3_039":["1VW3|1|A|G|1355","1VW3|1|A|U|1356","1VW3|1|A|C|1358","1VW3|1|A|G|1359","1VW3|1|A|G|1360","1VW3|1|A|C|1361","1VW3|1|A|C|1362","1VW3|1|A|G|1403","1VW3|1|A|A|1404","1VW3|1|A|U|1405","1VW3|1|A|A|1406","1VW3|1|A|A|1407","1VW3|1|A|C|1409"]},"motif_id":"IL_62296.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSS-cSS-cWW-L-R-R-L-L-L-cWW"}, {"num_instances":3,"num_nucleotides":5,"alignment":{"IL_1FJG_050":["1FJG|1|A|G|1255","1FJG|1|A|G|1258","1FJG|1|A|C|1277","1FJG|1|A|A|1279","1FJG|1|A|C|1282"],"IL_2AW7_057":["2AW7|1|A|G|1255","2AW7|1|A|G|1258","2AW7|1|A|C|1277","2AW7|1|A|G|1279","2AW7|1|A|C|1282"],"IL_1XJR_004":["1XJR|1|A|G|19","1XJR|1|A|C|20","1XJR|1|A|G|28","1XJR|1|A|A|29","1XJR|1|A|C|31"]},"motif_id":"IL_62499.10","chainbreak":"2","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62504.1","chainbreak":"2","common_name":"Triple Sheared with unpaired, inserted A","annotation":"There is a third tHS pair, but it is ambiguous and not annotated consistently","bp_signature":"cWW-tSH-tSH-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_62615.1","chainbreak":"2","common_name":"cWS plus stacked base","annotation":"cWS plus stacked base","bp_signature":"cWW-L-cWS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1VX6_070":["1VX6|1|A|A|1759","1VX6|1|A|A|1760","1VX6|1|A|U|1761","1VX6|1|A|A|1762","1VX6|1|A|G|1763","1VX6|1|A|C|2089","1VX6|1|A|U|2090","1VX6|1|A|U|2091","1VX6|1|A|G|2092","1VX6|1|A|U|2093","1VX6|1|A|A|2094","1VX6|1|A|U|2095"]},"motif_id":"IL_62617.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-tWH-R-R-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_63366.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cSS-L-cWH-cWS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_63723.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_63917.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1FJG_019":["1FJG|1|A|G|450","1FJG|1|A|A|451","1FJG|1|A|A|452","1FJG|1|A|A|453","1FJG|1|A|C|454","1FJG|1|A|C|455","1FJG|1|A|G|477","1FJG|1|A|A|478","1FJG|1|A|C|479","1FJG|1|A|U|480","1FJG|1|A|G|481","1FJG|1|A|A|482","1FJG|1|A|C|483"]},"motif_id":"IL_63952.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-tHW-tHW-L-R-cWW"}, {"num_instances":7,"num_nucleotides":10,"alignment":{"IL_4QCN_099":["4QCN|1|A|U|2648","4QCN|1|A|U|2649","4QCN|1|A|G|2650","4QCN|1|A|A|2651","4QCN|1|A|G|2652","4QCN|1|A|C|2787","4QCN|1|A|A|2788","4QCN|1|A|A|2789","4QCN|1|A|A|2791","4QCN|1|A|G|2795"],"IL_4IOA_095":["4IOA|1|X|U|2615","4IOA|1|X|U|2616","4IOA|1|X|G|2617","4IOA|1|X|A|2618","4IOA|1|X|G|2619","4IOA|1|X|C|2754","4IOA|1|X|A|2755","4IOA|1|X|A|2756","4IOA|1|X|A|2758","4IOA|1|X|G|2762"],"IL_1S72_089":["1S72|1|0|C|2672","1S72|1|0|U|2673","1S72|1|0|G|2674","1S72|1|0|A|2675","1S72|1|0|C|2676","1S72|1|0|G|2809","1S72|1|0|G|2810","1S72|1|0|A|2811","1S72|1|0|A|2813","1S72|1|0|G|2817"],"IL_4IOA_050":["4IOA|1|X|C|1364","4IOA|1|X|U|1365","4IOA|1|X|A|1366","4IOA|1|X|A|1367","4IOA|1|X|G|1368","4IOA|1|X|C|1389","4IOA|1|X|G|1390","4IOA|1|X|A|1391","4IOA|1|X|U|1392","4IOA|1|X|G|1393"],"IL_1VW3_040":["1VW3|1|A|C|1364","1VW3|1|A|U|1365","1VW3|1|A|A|1366","1VW3|1|A|A|1367","1VW3|1|A|U|1368","1VW3|1|A|A|1397","1VW3|1|A|G|1398","1VW3|1|A|A|1399","1VW3|1|A|U|1400","1VW3|1|A|G|1401"],"IL_4QCN_070":["4QCN|1|A|U|1882","4QCN|1|A|C|1883","4QCN|1|A|A|1884","4QCN|1|A|A|1885","4QCN|1|A|G|1886","4QCN|1|A|C|1909","4QCN|1|A|G|1910","4QCN|1|A|A|1911","4QCN|1|A|A|1912","4QCN|1|A|G|1913"],"IL_4IOA_069":["4IOA|1|X|U|1870","4IOA|1|X|G|1871","4IOA|1|X|A|1872","4IOA|1|X|A|1873","4IOA|1|X|G|1874","4IOA|1|X|U|1843","4IOA|1|X|C|1844","4IOA|1|X|A|1845","4IOA|1|X|A|1846","4IOA|1|X|G|1847"]},"motif_id":"IL_64847.2","chainbreak":"5","common_name":"Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.","annotation":"#1 and #2 belong together","bp_signature":"cWW-tWH-tSH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_64894.1","chainbreak":"5","common_name":"23S H91 IL | Single-Base Intercalation Site","annotation":"More than one motif","bp_signature":"cWW-R-R-cWW"}, {"num_instances":2,"num_nucleotides":12,"alignment":{"IL_1GID_011":["1GID|1|B|C|121","1GID|1|B|A|122","1GID|1|B|A|123","1GID|1|B|C|124","1GID|1|B|A|125","1GID|1|B|G|126","1GID|1|B|C|127","1GID|1|B|G|195","1GID|1|B|A|196","1GID|1|B|C|197","1GID|1|B|A|198","1GID|1|B|G|200"],"IL_1GID_004":["1GID|1|A|C|121","1GID|1|A|A|122","1GID|1|A|A|123","1GID|1|A|C|124","1GID|1|A|A|125","1GID|1|A|G|126","1GID|1|A|C|127","1GID|1|A|G|195","1GID|1|A|A|196","1GID|1|A|C|197","1GID|1|A|A|198","1GID|1|A|G|200"]},"motif_id":"IL_65137.1","chainbreak":"7","common_name":"Kink-turn like motif in Group I Intron","annotation":"","bp_signature":"cWW-L-cSS-tWH-tHW-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_65542.1","chainbreak":"7","common_name":"SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif","annotation":"From Signal Recognition Particle (SRP) RNA. This group has some motifs that don't belong together. | Two groups. Outliers have unpaired A stacked in the motif.","bp_signature":"cWW-tSH-tWH-tHW-tHS-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_65553.11","chainbreak":"7","common_name":"Kink-turn","annotation":"","bp_signature":"cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_65681.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cSW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_66407.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-tWH-L-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2AW7_033":["2AW7|1|A|U|605","2AW7|1|A|G|606","2AW7|1|A|A|607","2AW7|1|A|A|608","2AW7|1|A|A|609","2AW7|1|A|U|610","2AW7|1|A|C|611","2AW7|1|A|C|612","2AW7|1|A|G|628","2AW7|1|A|A|629","2AW7|1|A|A|630","2AW7|1|A|C|631","2AW7|1|A|G|633"]},"motif_id":"IL_66744.1","chainbreak":"8","common_name":"SSU Helix 21 (h21) IL2 E.coli","annotation":"","bp_signature":"cWW-L-R-R-L-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_66775.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_67005.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW"}, {"num_instances":2,"num_nucleotides":10,"alignment":{"IL_2QBG_002":["2QBG|1|A|G|23","2QBG|1|A|G|24","2QBG|1|A|C|26","2QBG|1|A|C|27","2QBG|1|A|C|28","2QBG|1|A|G|56","2QBG|1|A|A|57","2QBG|1|A|A|58","2QBG|1|A|A|59","2QBG|1|A|C|60"],"IL_4IOA_105":["4IOA|1|Y|G|25","4IOA|1|Y|G|26","4IOA|1|Y|A|28","4IOA|1|Y|C|29","4IOA|1|Y|C|30","4IOA|1|Y|G|58","4IOA|1|Y|A|59","4IOA|1|Y|A|60","4IOA|1|Y|A|61","4IOA|1|Y|C|62"]},"motif_id":"IL_67024.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-tSW-L-cWW"}, {"num_instances":15,"num_nucleotides":5,"alignment":{"IL_3U5H_117":["3U5H|1|5|U|2891","3U5H|1|5|A|2892","3U5H|1|5|U|2909","3U5H|1|5|A|2910","3U5H|1|5|G|2912"],"IL_4CUV_121":["4CUV|1|1|U|2891","4CUV|1|1|A|2892","4CUV|1|1|U|2909","4CUV|1|1|A|2910","4CUV|1|1|G|2912"],"IL_1VX6_117":["1VX6|1|A|U|3250","1VX6|1|A|U|3251","1VX6|1|A|A|3268","1VX6|1|A|A|3269","1VX6|1|A|G|3271"],"IL_4A1B_114":["4A1B|1|1|U|2879","4A1B|1|1|U|2880","4A1B|1|1|A|2897","4A1B|1|1|A|2898","4A1B|1|1|G|2900"],"IL_1VW3_081":["1VW3|1|A|U|2788","1VW3|1|A|C|2789","1VW3|1|A|G|2807","1VW3|1|A|A|2808","1VW3|1|A|G|2810"],"IL_1S72_087":["1S72|1|0|U|2557","1S72|1|0|G|2558","1S72|1|0|C|2575","1S72|1|0|A|2576","1S72|1|0|G|2578"],"IL_4QCN_096":["4QCN|1|A|U|2534","4QCN|1|A|G|2535","4QCN|1|A|C|2552","4QCN|1|A|A|2553","4QCN|1|A|G|2555"],"IL_4IOA_093":["4IOA|1|X|U|2501","4IOA|1|X|G|2502","4IOA|1|X|C|2519","4IOA|1|X|A|2520","4IOA|1|X|G|2522"],"IL_2QBG_098":["2QBG|1|B|U|2522","2QBG|1|B|G|2523","2QBG|1|B|C|2540","2QBG|1|B|A|2541","2QBG|1|B|G|2543"],"IL_1VX6_099":["1VX6|1|A|G|2689","1VX6|1|A|A|2691","1VX6|1|A|U|3340","1VX6|1|A|A|3341","1VX6|1|A|C|3343"],"IL_4A1B_094":["4A1B|1|1|G|2391","4A1B|1|1|A|2393","4A1B|1|1|U|2969","4A1B|1|1|A|2970","4A1B|1|1|C|2972"],"IL_3U5H_097":["3U5H|1|5|G|2396","3U5H|1|5|A|2398","3U5H|1|5|U|2981","3U5H|1|5|A|2982","3U5H|1|5|C|2984"],"IL_4CUV_100":["4CUV|1|1|G|2396","4CUV|1|1|A|2398","4CUV|1|1|U|2981","4CUV|1|1|A|2982","4CUV|1|1|C|2984"],"IL_1VW3_063":["1VW3|1|A|A|1954","1VW3|1|A|G|1956","1VW3|1|A|C|2879","1VW3|1|A|A|2881","1VW3|1|A|U|2882"],"IL_2QBG_079":["2QBG|1|B|A|2054","2QBG|1|B|G|2056","2QBG|1|B|C|2612","2QBG|1|B|A|2614","2QBG|1|B|U|2615"]},"motif_id":"IL_67038.1","chainbreak":"2","common_name":"23S H91 IL | Single-Base Intercalation Site","annotation":"More than one motif","bp_signature":"cWW-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_67399.1","chainbreak":"2","common_name":"REV element IL with syn G | Tandem cWW pairs (Not AU or GC)","annotation":"More than one motif","bp_signature":"cWW-L-R-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_67828.1","chainbreak":"2","common_name":"23S H91 IL | Single-Base Intercalation Site | Single, unpaired intercalated base, consensus A | 16S h32-h33-h34 3WJ","annotation":"More than one motif | IL_2AW7_046 is part of h32-h33-h34 3WJ","bp_signature":"cWW-R-cWW"}, {"num_instances":2,"num_nucleotides":6,"alignment":{"IL_4IOA_099":["4IOA|1|X|C|2674","4IOA|1|X|U|2675","4IOA|1|X|A|2690","4IOA|1|X|C|2691","4IOA|1|X|A|2692","4IOA|1|X|G|2694"],"IL_4CUX_033":["4CUX|1|2|U|1104","4CUX|1|2|C|1105","4CUX|1|2|G|616","4CUX|1|2|U|617","4CUX|1|2|U|618","4CUX|1|2|A|622"]},"motif_id":"IL_68034.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68200.1","chainbreak":"2","common_name":"One or more bulged nucleotides","annotation":"One or more bulged nucleotides","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68827.1","chainbreak":"2","common_name":"Reverse Kink-Turn","annotation":"Group I Intron","bp_signature":"cWW-tSH-tHH-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_68945.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_4IOA_074":["4IOA|1|X|A|2037","4IOA|1|X|G|2039","4IOA|1|X|A|2040","4IOA|1|X|U|2590","4IOA|1|X|A|2593","4IOA|1|X|U|2594"]},"motif_id":"IL_69482.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_69536.4","chainbreak":"3","common_name":"LSU Helix 96 (H96) IL2","annotation":"","bp_signature":"cWW-tSH-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_69668.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-tHW-bif-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_255D_001":["255D|1|A|U|5","255D|1|A|U|6","255D|1|A|C|7","255D|1|A|G|8","255D|1|A|U|5||||2_656","255D|1|A|U|6||||2_656","255D|1|A|C|7||||2_656","255D|1|A|G|8||||2_656"]},"motif_id":"IL_70069.1","chainbreak":"4","common_name":"tHS tHH bulge with S-turn","annotation":"","bp_signature":"cWW-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_70089.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_70102.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-R-cWH-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_70237.6","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-cWS-tSW-R-R-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_4M4O_003":["4M4O|1|B|U|15","4M4O|1|B|A|16","4M4O|1|B|A|17","4M4O|1|B|A|18","4M4O|1|B|G|19","4M4O|1|B|A|20","4M4O|1|B|G|21","4M4O|1|B|U|22","4M4O|1|B|G|23","4M4O|1|B|C|44","4M4O|1|B|A|45"],"IL_4M6D_012":["4M6D|1|H|U|15","4M6D|1|H|A|16","4M6D|1|H|A|17","4M6D|1|H|A|18","4M6D|1|H|G|19","4M6D|1|H|A|20","4M6D|1|H|G|21","4M6D|1|H|U|22","4M6D|1|H|G|23","4M6D|1|H|C|44","4M6D|1|H|A|45"]},"motif_id":"IL_70401.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-L-tWW-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":20,"alignment":{"IL_4CUX_048":["4CUX|1|2|A|891","4CUX|1|2|A|892","4CUX|1|2|U|893","4CUX|1|2|U|894","4CUX|1|2|G|895","4CUX|1|2|U|896","4CUX|1|2|C|897","4CUX|1|2|A|898","4CUX|1|2|G|899","4CUX|1|2|C|910","4CUX|1|2|U|911","4CUX|1|2|U|912","4CUX|1|2|G|914","4CUX|1|2|A|915","4CUX|1|2|U|916","4CUX|1|2|U|917","4CUX|1|2|U|918","4CUX|1|2|A|919","4CUX|1|2|U|920","4CUX|1|2|U|921"]},"motif_id":"IL_70529.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-cWW-L-R-R-R-L-L-tHS-R-R-cWW"}, {"num_instances":5,"num_nucleotides":13,"alignment":{"IL_4QCN_066":["4QCN|1|A|U|1829","4QCN|1|A|G|1830","4QCN|1|A|C|1831","4QCN|1|A|A|1833","4QCN|1|A|A|1834","4QCN|1|A|C|1835","4QCN|1|A|G|1844","4QCN|1|A|G|1845","4QCN|1|A|A|1846","4QCN|1|A|G|1848","4QCN|1|A|U|1849","4QCN|1|A|A|1850","4QCN|1|A|A|1852"],"IL_2QBG_071":["2QBG|1|B|U|1798","2QBG|1|B|G|1799","2QBG|1|B|C|1800","2QBG|1|B|A|1802","2QBG|1|B|A|1803","2QBG|1|B|C|1804","2QBG|1|B|G|1813","2QBG|1|B|G|1814","2QBG|1|B|A|1815","2QBG|1|B|G|1817","2QBG|1|B|U|1818","2QBG|1|B|A|1819","2QBG|1|B|A|1821"],"IL_4IOA_065":["4IOA|1|X|U|1789","4IOA|1|X|G|1790","4IOA|1|X|C|1791","4IOA|1|X|A|1793","4IOA|1|X|A|1794","4IOA|1|X|C|1795","4IOA|1|X|G|1805","4IOA|1|X|G|1806","4IOA|1|X|A|1807","4IOA|1|X|G|1809","4IOA|1|X|U|1810","4IOA|1|X|A|1811","4IOA|1|X|A|1813"],"IL_1VW3_053":["1VW3|1|A|U|1705","1VW3|1|A|G|1706","1VW3|1|A|C|1707","1VW3|1|A|G|1709","1VW3|1|A|A|1710","1VW3|1|A|A|1711","1VW3|1|A|U|1721","1VW3|1|A|U|1722","1VW3|1|A|A|1723","1VW3|1|A|G|1725","1VW3|1|A|U|1726","1VW3|1|A|A|1727","1VW3|1|A|A|1729"],"IL_1S72_065":["1S72|1|0|C|1854","1S72|1|0|G|1855","1S72|1|0|C|1856","1S72|1|0|A|1858","1S72|1|0|A|1859","1S72|1|0|U|1860","1S72|1|0|A|1869","1S72|1|0|C|1870","1S72|1|0|U|1871","1S72|1|0|G|1873","1S72|1|0|U|1874","1S72|1|0|A|1875","1S72|1|0|G|1877"]},"motif_id":"IL_71229.2","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_72055.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-L-cWW-cWW-cWW-cWW-R-bif-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_72062.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cSW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_72158.6","chainbreak":"6","common_name":"LSU Helix 62 (H62) IL","annotation":"one bulged base","bp_signature":"cWW-tSH-tSH-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73000.3","chainbreak":"6","common_name":"cHS-cWS","annotation":"SSU Helix 39 (h39) IL and 5S Loop B2 with AA Bulge","bp_signature":"cWW-cSW-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73276.8","chainbreak":"6","common_name":"C-loop","annotation":"","bp_signature":"cWW-tHW-cSW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73281.1","chainbreak":"6","common_name":"Sarcin-like with an intercalated basepair","annotation":"","bp_signature":"cWW-cWW-bif-R-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_73348.1","chainbreak":"6","common_name":"Triple sheared (tSH-tHS-tHS) no inserted bases","annotation":"No inserted nucleotides.","bp_signature":"cWW-tSH-L-R-tHS-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_1VW3_005":["1VW3|1|A|U|113","1VW3|1|A|U|114","1VW3|1|A|A|115","1VW3|1|A|U|117","1VW3|1|A|A|118","1VW3|1|A|A|119","1VW3|1|A|U|120","1VW3|1|A|A|121","1VW3|1|A|U|140","1VW3|1|A|U|141","1VW3|1|A|A|142","1VW3|1|A|A|143","1VW3|1|A|A|144","1VW3|1|A|A|145"]},"motif_id":"IL_73656.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_74163.1","chainbreak":"8","common_name":"cWS making long-range triple","annotation":"cWS making long-range triple","bp_signature":"cWW-L-cWS-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_1VW3_002":["1VW3|1|A|A|25","1VW3|1|A|A|27","1VW3|1|A|A|29","1VW3|1|A|U|32","1VW3|1|A|A|3273","1VW3|1|A|U|3274"]},"motif_id":"IL_74400.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cSH-L-cWW"}, {"num_instances":2,"num_nucleotides":20,"alignment":{"IL_4IOA_036":["4IOA|1|X|G|1035","4IOA|1|X|G|1036","4IOA|1|X|U|1038","4IOA|1|X|A|1039","4IOA|1|X|A|1040","4IOA|1|X|G|1041","4IOA|1|X|C|1135","4IOA|1|X|G|1136","4IOA|1|X|A|1137","4IOA|1|X|A|1139","4IOA|1|X|A|1140","4IOA|1|X|G|1142","4IOA|1|X|A|1143","4IOA|1|X|U|1144","4IOA|1|X|C|1145","4IOA|1|X|G|1146","4IOA|1|X|G|1147","4IOA|1|X|G|1148","4IOA|1|X|G|1149","4IOA|1|X|C|1150"],"IL_4QCN_039":["4QCN|1|A|G|1070","4QCN|1|A|G|1071","4QCN|1|A|A|1073","4QCN|1|A|A|1074","4QCN|1|A|A|1075","4QCN|1|A|G|1076","4QCN|1|A|C|1170","4QCN|1|A|G|1171","4QCN|1|A|A|1172","4QCN|1|A|A|1174","4QCN|1|A|A|1175","4QCN|1|A|G|1177","4QCN|1|A|A|1178","4QCN|1|A|U|1179","4QCN|1|A|C|1180","4QCN|1|A|G|1181","4QCN|1|A|G|1182","4QCN|1|A|G|1183","4QCN|1|A|G|1184","4QCN|1|A|C|1185"]},"motif_id":"IL_74462.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_74856.3","chainbreak":"6","common_name":"LSU Helix 89 (H89) IL2","annotation":"cSH platform","bp_signature":"cWW-cWW-cSH-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_74876.3","chainbreak":"6","common_name":"Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.","annotation":"#1 and #2 belong together","bp_signature":"cWW-tWH-L-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_75328.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-L-L-cSS-tSS-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3R4F_001":["3R4F|1|A|G|14","3R4F|1|A|G|15","3R4F|1|A|A|16","3R4F|1|A|A|17","3R4F|1|A|A|18","3R4F|1|A|C|19","3R4F|1|A|C|20","3R4F|1|A|C|21","3R4F|1|A|G|34","3R4F|1|A|C|35"]},"motif_id":"IL_75415.1","chainbreak":"8","common_name":"Pseudo-knot forming internal loop","annotation":"IL that forms PK with HL. From viral DNA packaging motor","bp_signature":"cWW-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_76024.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW"}, {"num_instances":2,"num_nucleotides":18,"alignment":{"IL_1M5O_005":["1M5O|1|E|G|19","1M5O|1|E|A|20","1M5O|1|E|G|21","1M5O|1|E|A|22","1M5O|1|E|A|23","1M5O|1|E|A|24","1M5O|1|E|C|25","1M5O|1|E|A|26","1M5O|1|E|C|27","1M5O|1|E|G|54","1M5O|1|E|G|55","1M5O|1|E|A|57","1M5O|1|E|A|59","1M5O|1|E|U|60","1M5O|1|E|U|61","1M5O|1|E|A|62","1M5O|1|E|C|63","1M5O|1|E|C|64"],"IL_2P7D_001":["2P7D|1|C|G|19","2P7D|1|C|A|20","2P7D|1|C|G|21","2P7D|1|C|A|22","2P7D|1|C|A|23","2P7D|1|C|A|24","2P7D|1|C|C|25","2P7D|1|C|A|26","2P7D|1|C|C|27","2P7D|1|D|G|35","2P7D|1|D|G|36","2P7D|1|D|A|38","2P7D|1|D|A|40","2P7D|1|D|U|41","2P7D|1|D|U|42","2P7D|1|D|A|43","2P7D|1|D|C|44","2P7D|1|D|C|45"]},"motif_id":"IL_76095.3","chainbreak":"9","common_name":"Motif from Hairpin Ribozyme","annotation":"Contains syn A. is this correct?","bp_signature":"cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_76263.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_77014.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-tWH-cSH-L-cWW-cWW"}, {"num_instances":4,"num_nucleotides":17,"alignment":{"IL_1MZP_003":["1MZP|1|B|G|20","1MZP|1|B|G|21","1MZP|1|B|A|22","1MZP|1|B|G|23","1MZP|1|B|C|32","1MZP|1|B|G|33","1MZP|1|B|C|34","1MZP|1|B|C|35","1MZP|1|B|G|36","1MZP|1|B|G|37","1MZP|1|B|U|38","1MZP|1|B|G|39","1MZP|1|B|A|41","1MZP|1|B|A|42","1MZP|1|B|U|43","1MZP|1|B|A|44","1MZP|1|B|C|45"],"IL_3UMY_003":["3UMY|1|B|G|2124","3UMY|1|B|G|2125","3UMY|1|B|A|2126","3UMY|1|B|G|2127","3UMY|1|B|C|2161","3UMY|1|B|G|2162","3UMY|1|B|C|2163","3UMY|1|B|C|2164","3UMY|1|B|G|2165","3UMY|1|B|G|2166","3UMY|1|B|U|2167","3UMY|1|B|G|2168","3UMY|1|B|A|2170","3UMY|1|B|A|2171","3UMY|1|B|U|2172","3UMY|1|B|A|2173","3UMY|1|B|C|2174"],"IL_4CUV_106":["4CUV|1|1|G|2466","4CUV|1|1|G|2467","4CUV|1|1|A|2468","4CUV|1|1|G|2469","4CUV|1|1|C|2476","4CUV|1|1|G|2477","4CUV|1|1|C|2478","4CUV|1|1|C|2479","4CUV|1|1|G|2480","4CUV|1|1|G|2481","4CUV|1|1|U|2482","4CUV|1|1|G|2483","4CUV|1|1|A|2485","4CUV|1|1|A|2486","4CUV|1|1|U|2487","4CUV|1|1|A|2488","4CUV|1|1|C|2489"],"IL_4QCN_082":["4QCN|1|A|G|2146","4QCN|1|A|G|2147","4QCN|1|A|A|2148","4QCN|1|A|G|2149","4QCN|1|A|C|2183","4QCN|1|A|G|2184","4QCN|1|A|C|2185","4QCN|1|A|C|2186","4QCN|1|A|G|2187","4QCN|1|A|G|2188","4QCN|1|A|U|2189","4QCN|1|A|G|2190","4QCN|1|A|A|2192","4QCN|1|A|A|2193","4QCN|1|A|U|2194","4QCN|1|A|A|2195","4QCN|1|A|C|2196"]},"motif_id":"IL_77076.3","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_77263.2","chainbreak":"4","common_name":"Kink-turn from U4","annotation":"Many copies of same structure. One motif! Combine with other kink-turns?","bp_signature":"cWW-tSS-L-tSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_4FAW_009":["4FAW|1|A|U|168","4FAW|1|A|G|169","4FAW|1|A|C|197","4FAW|1|A|U|198","4FAW|1|A|U|199","4FAW|1|A|U|200","4FAW|1|A|C|201","4FAW|1|A|U|202","4FAW|1|A|G|203","4FAW|1|A|C|204","4FAW|1|A|C|205","4FAW|1|A|A|206","4FAW|1|A|A|208","4FAW|1|A|G|209"]},"motif_id":"IL_77296.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-R-R-R-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_3J7A_062":["3J7A|1|A|A|1447","3J7A|1|A|U|1448","3J7A|1|A|U|1449","3J7A|1|A|A|1450","3J7A|1|A|U|1623","3J7A|1|A|U|1624","3J7A|1|A|C|1625","3J7A|1|A|U|1626"]},"motif_id":"IL_77862.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_77920.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_78744.1","chainbreak":"4","common_name":"Quadruple Sheared (tSH-tSH-tHS-tHS)","annotation":"","bp_signature":"cWW-tSH-tSH-tHS-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_78984.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-tSH-R-tHS-cHW-cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_79398.1","chainbreak":"4","common_name":"cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif","annotation":"More than one motif | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif.","bp_signature":"cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_79636.1","chainbreak":"4","common_name":"Kink-turn","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_4FAW_005":["4FAW|1|A|G|128","4FAW|1|A|G|129","4FAW|1|A|U|234","4FAW|1|A|U|235","4FAW|1|A|G|236","4FAW|1|A|A|237","4FAW|1|A|U|238"]},"motif_id":"IL_79910.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_80494.4","chainbreak":"2","common_name":"LSU H58 IL2 H.m.","annotation":"","bp_signature":"cWW-tWH-L-R-tHS-bif-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1X8W_008":["1X8W|1|A|G|313","1X8W|1|A|A|314","1X8W|1|A|C|315","1X8W|1|A|G|406","1X8W|1|A|A|407","1X8W|1|A|G|408","1X8W|1|A|U|409","1X8W|1|A|A|410","1X8W|1|A|C|411","1X8W|1|A|U|412","1X8W|1|A|C|413"]},"motif_id":"IL_80505.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_2QBG_100":["2QBG|1|B|C|2636","2QBG|1|B|U|2637","2QBG|1|B|G|2638","2QBG|1|B|A|2639","2QBG|1|B|G|2640","2QBG|1|B|C|2774","2QBG|1|B|G|2775","2QBG|1|B|A|2776","2QBG|1|B|G|2777","2QBG|1|B|A|2778","2QBG|1|B|U|2779","2QBG|1|B|A|2781","2QBG|1|B|G|2782"]},"motif_id":"IL_80652.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-R-cSH-tWH-tSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1MFQ_006":["1MFQ|1|A|U|181","1MFQ|1|A|G|182","1MFQ|1|A|A|183","1MFQ|1|A|A|184","1MFQ|1|A|C|185","1MFQ|1|A|C|186","1MFQ|1|A|G|187","1MFQ|1|A|C|212","1MFQ|1|A|A|213","1MFQ|1|A|A|214","1MFQ|1|A|A|215","1MFQ|1|A|A|216"]},"motif_id":"IL_80714.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-R-R-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":26,"alignment":{"IL_1VX6_060":["1VX6|1|A|G|1322","1VX6|1|A|A|1323","1VX6|1|A|C|1325","1VX6|1|A|C|1326","1VX6|1|A|C|1327","1VX6|1|A|A|1328","1VX6|1|A|U|1329","1VX6|1|A|A|1330","1VX6|1|A|A|1331","1VX6|1|A|A|1332","1VX6|1|A|A|1333","1VX6|1|A|U|1427","1VX6|1|A|G|1428","1VX6|1|A|A|1429","1VX6|1|A|A|1431","1VX6|1|A|A|1432","1VX6|1|A|U|1433","1VX6|1|A|G|1434","1VX6|1|A|G|1435","1VX6|1|A|A|1436","1VX6|1|A|U|1437","1VX6|1|A|G|1438","1VX6|1|A|G|1439","1VX6|1|A|C|1440","1VX6|1|A|G|1441","1VX6|1|A|C|1442"]},"motif_id":"IL_81280.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_81512.1","chainbreak":"11","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-tHW-L-R-tHH-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_3J7A_045":["3J7A|1|A|A|962","3J7A|1|A|U|963","3J7A|1|A|G|964","3J7A|1|A|U|965","3J7A|1|A|C|966","3J7A|1|A|A|967","3J7A|1|A|G|968","3J7A|1|A|C|979","3J7A|1|A|U|980","3J7A|1|A|U|981","3J7A|1|A|G|983","3J7A|1|A|A|984","3J7A|1|A|U|985","3J7A|1|A|U|986","3J7A|1|A|U|987","3J7A|1|A|U|988"]},"motif_id":"IL_81587.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-L-tSH-tHS-tSS-tSS-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_81956.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-cSS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_81965.1","chainbreak":"7","common_name":"Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW.","annotation":"No inserted nucleotides. | Two different groups","bp_signature":"cWW-tSH-tHS-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82188.4","chainbreak":"7","common_name":"LSU H68 IL from H.m.","annotation":"More than one motif","bp_signature":"cWW-tSH-L-R-R-R-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82444.4","chainbreak":"7","common_name":"cWH basepair","annotation":"cWH basepair","bp_signature":"cWW-cWH-cWW"}, {"num_instances":3,"num_nucleotides":10,"alignment":{"IL_2GDI_006":["2GDI|1|Y|U|20","2GDI|1|Y|G|21","2GDI|1|Y|C|38","2GDI|1|Y|U|39","2GDI|1|Y|G|40","2GDI|1|Y|A|41","2GDI|1|Y|G|42","2GDI|1|Y|A|43","2GDI|1|Y|A|44","2GDI|1|Y|A|45"],"IL_2GDI_002":["2GDI|1|X|U|20","2GDI|1|X|G|21","2GDI|1|X|C|38","2GDI|1|X|U|39","2GDI|1|X|G|40","2GDI|1|X|A|41","2GDI|1|X|G|42","2GDI|1|X|A|43","2GDI|1|X|A|44","2GDI|1|X|A|45"],"IL_2HOJ_002":["2HOJ|1|A|U|20","2HOJ|1|A|G|21","2HOJ|1|A|C|38","2HOJ|1|A|U|39","2HOJ|1|A|G|40","2HOJ|1|A|A|41","2HOJ|1|A|G|42","2HOJ|1|A|A|43","2HOJ|1|A|A|44","2HOJ|1|A|A|45"]},"motif_id":"IL_82563.1","chainbreak":"2","common_name":"Thi-box riboswitch T-loop","annotation":"This T-loop is actually an IL not an HL! It binds TPP","bp_signature":"cWW-R-tWH-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82600.1","chainbreak":"2","common_name":"cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif","annotation":"More than one motif | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif.","bp_signature":"cWW-L-R-L-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_413D_001":["413D|1|A|U|6","413D|1|A|U|7","413D|1|A|C|8","413D|1|A|G|9","413D|1|A|U|6||||2_555","413D|1|A|U|7||||2_555","413D|1|A|C|8||||2_555","413D|1|A|G|9||||2_555"]},"motif_id":"IL_82601.1","chainbreak":"4","common_name":"Tandem cWW water-inserted CU pairs","annotation":"","bp_signature":"cWW-cWW-cWW-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_1Y0Q_001":["1Y0Q|1|A|G|53","1Y0Q|1|A|G|54","1Y0Q|1|A|A|55","1Y0Q|1|A|A|56","1Y0Q|1|A|C|57","1Y0Q|1|A|A|58","1Y0Q|1|A|C|59","1Y0Q|1|A|G|80","1Y0Q|1|A|C|81","1Y0Q|1|A|A|82","1Y0Q|1|A|A|83","1Y0Q|1|A|U|84","1Y0Q|1|A|C|85"]},"motif_id":"IL_82650.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWS-tSH-tHS-L-R-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_82822.1","chainbreak":"7","common_name":"One or more bulged bases","annotation":"One or more bulged bases","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_83250.1","chainbreak":"7","common_name":"16S h40 3WJ T.th.","annotation":"","bp_signature":"cWW-tWH-R-R-R-cSH-cWW-cWW"}, {"num_instances":4,"num_nucleotides":7,"alignment":{"IL_1QA6_001":["1QA6|1|C|C|126","1QA6|1|C|A|127","1QA6|1|C|U|128","1QA6|1|C|C|129","1QA6|1|C|G|109","1QA6|1|C|U|110","1QA6|1|C|G|112"],"IL_2QBG_043":["2QBG|1|B|C|1076","2QBG|1|B|A|1077","2QBG|1|B|U|1078","2QBG|1|B|C|1079","2QBG|1|B|G|1059","2QBG|1|B|U|1060","2QBG|1|B|G|1062"],"IL_3ZP8_002":["3ZP8|1|A|G|5","3ZP8|1|A|U|6","3ZP8|1|A|A|7","3ZP8|1|A|U|9","3ZP8|1|B|A|12","3ZP8|1|B|U|13","3ZP8|1|B|C|14"],"IL_4CUX_018":["4CUX|1|2|C|270","4CUX|1|2|A|271","4CUX|1|2|U|272","4CUX|1|2|G|273","4CUX|1|2|U|283","4CUX|1|2|G|284","4CUX|1|2|G|285"]},"motif_id":"IL_83339.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_1VX6_005":["1VX6|1|A|G|118","1VX6|1|A|G|119","1VX6|1|A|A|122","1VX6|1|A|A|123","1VX6|1|A|U|124","1VX6|1|A|A|153","1VX6|1|A|A|154","1VX6|1|A|U|155","1VX6|1|A|G|157","1VX6|1|A|U|158","1VX6|1|A|C|159"]},"motif_id":"IL_84276.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-tHS-cWW-R-R-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_4QCN_103":["4QCN|1|A|C|2707","4QCN|1|A|U|2708","4QCN|1|A|A|2723","4QCN|1|A|U|2724","4QCN|1|A|A|2725","4QCN|1|A|A|2726","4QCN|1|A|G|2727"]},"motif_id":"IL_84995.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85010.1","chainbreak":"2","common_name":"23S H91 IL | Single-Base Intercalation Site","annotation":"More than one motif","bp_signature":"cWW-L-cSH-cWW"}, {"num_instances":1,"num_nucleotides":6,"alignment":{"IL_4A1B_043":["4A1B|1|1|A|1001","4A1B|1|1|G|1003","4A1B|1|1|A|1005","4A1B|1|1|G|1007","4A1B|1|1|C|1129","4A1B|1|1|U|1132"]},"motif_id":"IL_85510.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85647.6","chainbreak":"4","common_name":"Sarcin-ricin parent motif with 15 Nts","annotation":"Complete Sarcin-ricin IL motif","bp_signature":"cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85707.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85805.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_85975.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_86033.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":4,"alignment":{"IL_1S72_073":["1S72|1|0|A|2095","1S72|1|0|G|2097","1S72|1|0|C|2647","1S72|1|0|U|2650"]},"motif_id":"IL_86059.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW"}, {"num_instances":1,"num_nucleotides":5,"alignment":{"IL_2AW7_015":["2AW7|1|A|U|249","2AW7|1|A|A|250","2AW7|1|A|U|252","2AW7|1|A|A|274","2AW7|1|A|G|275"]},"motif_id":"IL_86060.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5F_004":["3U5F|1|6|G|42","3U5F|1|6|A|43","3U5F|1|6|U|44","3U5F|1|6|U|45","3U5F|1|6|A|46","3U5F|1|6|G|48","3U5F|1|6|C|431","3U5F|1|6|G|432","3U5F|1|6|C|433"]},"motif_id":"IL_86336.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_86357.6","chainbreak":"3","common_name":"LSU Helix 61 IL2","annotation":"","bp_signature":"cWW-tWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_86694.1","chainbreak":"3","common_name":"SSU Helix 8 (h8) IL E.c. and Yeast","annotation":"","bp_signature":"cWW-cWW-tWH-tWH-tHW-tHW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_86933.1","chainbreak":"3","common_name":"Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).","annotation":"One poorly modeled instance from Eukaryal SSU does not belong. Two groups.","bp_signature":"cWW-cWW-tSH-tHS-tHS-L-R-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_1S72_013":["1S72|1|0|C|290","1S72|1|0|C|291","1S72|1|0|G|292","1S72|1|0|A|293","1S72|1|0|C|294","1S72|1|0|C|295","1S72|1|0|G|296","1S72|1|0|C|355","1S72|1|0|C|356","1S72|1|0|A|357","1S72|1|0|G|358","1S72|1|0|U|359","1S72|1|0|A|360","1S72|1|0|C|361","1S72|1|0|G|362"]},"motif_id":"IL_86981.1","chainbreak":"7","common_name":"Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.","annotation":"This loop is unique to Archaeal 23S rRNA","bp_signature":"cWW-bif-tSH-tHW-cSH-tHH-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87168.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSS-L-tSH-tSS-L-cSH-R-R-L-bif-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87394.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_4BPP_027":["4BPP|1|A|G|507","4BPP|1|A|A|508","4BPP|1|A|G|509","4BPP|1|A|C|529","4BPP|1|A|G|530","4BPP|1|A|A|531","4BPP|1|A|G|532","4BPP|1|A|G|533","4BPP|1|A|A|535","4BPP|1|A|C|536"]},"motif_id":"IL_87523.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87548.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-tSH-tHW-L-cSH-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_87899.1","chainbreak":"3","common_name":"SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif","annotation":"This is one family. 3UXR has A in syn which is wrong","bp_signature":"cWW-R-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_88263.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-bif-R-cWW-L-cWW"}, {"num_instances":1,"num_nucleotides":15,"alignment":{"IL_4A1B_045":["4A1B|1|1|A|1018","4A1B|1|1|G|1019","4A1B|1|1|G|1020","4A1B|1|1|U|1021","4A1B|1|1|A|1022","4A1B|1|1|A|1023","4A1B|1|1|A|1024","4A1B|1|1|U|1076","4A1B|1|1|U|1077","4A1B|1|1|U|1078","4A1B|1|1|A|1079","4A1B|1|1|A|1080","4A1B|1|1|A|1081","4A1B|1|1|U|1082","4A1B|1|1|U|1083"]},"motif_id":"IL_88367.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_88416.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-cWW-cSH-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_88865.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-L-cSH-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_89033.1","chainbreak":"7","common_name":"23S H41 IL and 16S h18 IL : Has large bulge on one side","annotation":"Forms multiple 3\u00b0 interactions. Conserved As with SE of neighboring cWW pairs","bp_signature":"cWW-L-L-L-cSH-L-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_4CUX_076":["4CUX|1|2|G|1488","4CUX|1|2|U|1489","4CUX|1|2|C|1490","4CUX|1|2|U|1491","4CUX|1|2|A|1492","4CUX|1|2|A|1493","4CUX|1|2|C|1494","4CUX|1|2|G|1513","4CUX|1|2|U|1514","4CUX|1|2|A|1515","4CUX|1|2|C|1518"]},"motif_id":"IL_89463.1","chainbreak":"7","common_name":"","annotation":"","bp_signature":"cWW-tSS-cSS-L-R-R-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_2QBG_009":["2QBG|1|B|G|81","2QBG|1|B|U|82","2QBG|1|B|A|83","2QBG|1|B|A|84","2QBG|1|B|G|85","2QBG|1|B|C|97","2QBG|1|B|G|98","2QBG|1|B|U|99","2QBG|1|B|A|103","2QBG|1|B|A|104","2QBG|1|B|C|105"]},"motif_id":"IL_89794.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSH-tSH-tSS-tSS-R-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_4QCN_109":["4QCN|1|B|G|23","4QCN|1|B|G|24","4QCN|1|B|A|25","4QCN|1|B|A|26","4QCN|1|B|C|27","4QCN|1|B|C|28","4QCN|1|B|G|56","4QCN|1|B|A|57","4QCN|1|B|A|58","4QCN|1|B|A|59","4QCN|1|B|C|60"]},"motif_id":"IL_90633.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-tSW-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_90735.2","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4FAW_001":["4FAW|1|A|G|10","4FAW|1|A|C|11","4FAW|1|A|A|12","4FAW|1|A|G|14","4FAW|1|A|C|257","4FAW|1|A|U|258","4FAW|1|A|U|259","4FAW|1|A|C|262"]},"motif_id":"IL_91044.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-tHW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_4QCN_059":["4QCN|1|A|G|1572","4QCN|1|A|G|1573","4QCN|1|A|A|1574","4QCN|1|A|A|1575","4QCN|1|A|G|1576","4QCN|1|A|U|1587","4QCN|1|A|G|1588","4QCN|1|A|A|1589","4QCN|1|A|A|1591","4QCN|1|A|A|1592","4QCN|1|A|C|1593"]},"motif_id":"IL_91061.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSH-R-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_3SIV_002":["3SIV|1|C|C|40","3SIV|1|C|G|41","3SIV|1|C|C|42","3SIV|1|C|A|43","3SIV|1|C|U|44","3SIV|1|C|G|46","3SIV|1|F|C|40","3SIV|1|F|G|41","3SIV|1|F|C|42","3SIV|1|F|A|43","3SIV|1|F|U|44","3SIV|1|F|G|46"]},"motif_id":"IL_91078.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSW-L-R-R-L-tWS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4A1C_004":["4A1C|1|3|G|21","4A1C|1|3|A|22","4A1C|1|3|A|23","4A1C|1|3|A|24","4A1C|1|3|A|25","4A1C|1|3|C|26","4A1C|1|3|G|56","4A1C|1|3|C|57"]},"motif_id":"IL_91089.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_91102.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_91379.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-R-R-R-L-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_4KZD_005":["4KZD|1|R|C|25","4KZD|1|R|G|26","4KZD|1|R|G|27","4KZD|1|R|G|28","4KZD|1|R|U|29","4KZD|1|R|A|53","4KZD|1|R|G|54","4KZD|1|R|U|55","4KZD|1|R|G|57","4KZD|1|R|A|58","4KZD|1|R|G|59","4KZD|1|R|G|61","4KZD|1|R|U|62","4KZD|1|R|G|63"],"IL_4TS2_006":["4TS2|1|X|C|28","4TS2|1|X|G|29","4TS2|1|X|G|30","4TS2|1|X|G|31","4TS2|1|X|U|32","4TS2|1|Y|A|64","4TS2|1|Y|G|65","4TS2|1|Y|U|66","4TS2|1|Y|G|68","4TS2|1|Y|A|69","4TS2|1|Y|G|70","4TS2|1|Y|G|72","4TS2|1|Y|U|73","4TS2|1|Y|G|74"]},"motif_id":"IL_91942.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92027.6","chainbreak":"5","common_name":"16S h21 S8 binding site","annotation":"Should 16S 594-596 be included in IL? More than one type of motif here.","bp_signature":"cWW-cSH-cSW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92114.4","chainbreak":"5","common_name":"GAAA loop receptor \"platform\" motif","annotation":"One motif!","bp_signature":"cWW-cSH-tHW-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92122.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cWW-tWH-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92205.1","chainbreak":"5","common_name":"cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)","annotation":"There are also a small number of poorly modeled motifs and motifs with different central \nbasepairs. | More than one motif | Single sheared with 1 to 3 bulged bases. More than one Motif. | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif.","bp_signature":"cWW-cWW-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92422.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92602.1","chainbreak":"5","common_name":"Non-canonical cWW basepair","annotation":"Non-canonical cWW basepair","bp_signature":"cWW-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92957.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-cHW-tHW-tHW-tHW-bif-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_92986.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tSH-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_93424.7","chainbreak":"5","common_name":"tSH-inserted-tHW","annotation":"The extra base is inserted between tSH and tHW basepairs. Most instances have one or more bulged bases.","bp_signature":"cWW-tSH-R-tHW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_93568.5","chainbreak":"5","common_name":"Triple Sheared (tSH-tHS-tHS) with wobble cWW.","annotation":"More than one group. Poor modeling in some. Three from SSU one from Cobalamin riboswitch.","bp_signature":"cWW-tSH-tHS-tHS-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_93855.1","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-L-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_94403.6","chainbreak":"5","common_name":"LSU H77","annotation":"","bp_signature":"cWW-L-L-tWH-L-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_94430.8","chainbreak":"5","common_name":"16S h32-h33-h34 3WJ","annotation":"IL_2AW7_046 is part of h32-h33-h34 3WJ","bp_signature":"cWW-cSW-cWW"}, {"num_instances":4,"num_nucleotides":10,"alignment":{"IL_3U5H_079":["3U5H|1|5|U|1694","3U5H|1|5|U|1695","3U5H|1|5|A|1696","3U5H|1|5|A|1697","3U5H|1|5|C|1698","3U5H|1|5|G|1747","3U5H|1|5|G|1748","3U5H|1|5|A|1749","3U5H|1|5|A|1750","3U5H|1|5|A|1752"],"IL_4CUV_078":["4CUV|1|1|U|1694","4CUV|1|1|U|1695","4CUV|1|1|A|1696","4CUV|1|1|A|1697","4CUV|1|1|C|1698","4CUV|1|1|G|1747","4CUV|1|1|G|1748","4CUV|1|1|A|1749","4CUV|1|1|A|1750","4CUV|1|1|A|1752"],"IL_4A1B_074":["4A1B|1|1|U|1718","4A1B|1|1|U|1719","4A1B|1|1|A|1720","4A1B|1|1|A|1721","4A1B|1|1|C|1722","4A1B|1|1|G|1772","4A1B|1|1|G|1773","4A1B|1|1|C|1774","4A1B|1|1|A|1775","4A1B|1|1|A|1777"],"IL_1VX6_077":["1VX6|1|A|U|1849","1VX6|1|A|U|1850","1VX6|1|A|A|1851","1VX6|1|A|C|1852","1VX6|1|A|C|1853","1VX6|1|A|G|1967","1VX6|1|A|C|1968","1VX6|1|A|A|1969","1VX6|1|A|A|1970","1VX6|1|A|A|1972"]},"motif_id":"IL_94519.2","chainbreak":"5","common_name":"","annotation":"","bp_signature":"cWW-tWH-tHH-tHS-cWW"}, {"num_instances":2,"num_nucleotides":17,"alignment":{"IL_3D0U_003":["3D0U|1|A|G|19","3D0U|1|A|A|20","3D0U|1|A|U|21","3D0U|1|A|G|22","3D0U|1|A|A|23","3D0U|1|A|G|24","3D0U|1|A|U|25","3D0U|1|A|A|26","3D0U|1|A|G|27","3D0U|1|A|U|60","3D0U|1|A|G|61","3D0U|1|A|A|62","3D0U|1|A|A|63","3D0U|1|A|A|64","3D0U|1|A|G|65","3D0U|1|A|G|66","3D0U|1|A|C|67"],"IL_3DIR_003":["3DIR|1|A|G|22","3DIR|1|A|A|23","3DIR|1|A|U|24","3DIR|1|A|G|25","3DIR|1|A|A|26","3DIR|1|A|G|27","3DIR|1|A|U|28","3DIR|1|A|A|29","3DIR|1|A|G|30","3DIR|1|A|U|63","3DIR|1|A|G|64","3DIR|1|A|A|65","3DIR|1|A|A|66","3DIR|1|A|A|67","3DIR|1|A|G|68","3DIR|1|A|G|69","3DIR|1|A|C|70"]},"motif_id":"IL_94744.1","chainbreak":"9","common_name":"Sarcin-ricin motif with extra cWW GA pair","annotation":"From Lysine Riboswitch","bp_signature":"cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_94799.1","chainbreak":"9","common_name":"tHS tHH bulge with S-turn","annotation":"More than one group. | More than one group. | one bulged base | one bulged base | Two motifs. 2nd is decoding site. Separate","bp_signature":"cWW-L-R-R-L-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_94958.1","chainbreak":"9","common_name":"","annotation":"","bp_signature":"cWW-L-cWH-R-R-tHW-L-cWS-cWW"}, {"num_instances":1,"num_nucleotides":14,"alignment":{"IL_4FAW_012":["4FAW|1|A|C|296","4FAW|1|A|A|297","4FAW|1|A|U|298","4FAW|1|A|A|299","4FAW|1|A|G|300","4FAW|1|A|U|301","4FAW|1|A|A|302","4FAW|1|A|C|303","4FAW|1|A|G|316","4FAW|1|A|G|317","4FAW|1|A|A|318","4FAW|1|A|A|319","4FAW|1|A|G|320","4FAW|1|A|G|321"]},"motif_id":"IL_94973.1","chainbreak":"8","common_name":"Sarcin-Ricin from Group II Intron with inserted base and poor modeling:","annotation":"Contains inserted inserted, unpaired base and poorly modeled tHS.","bp_signature":"cWW-L-R-L-tHH-cSH-tWH-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_95652.5","chainbreak":"8","common_name":"SSU Helix 27 (h27) IL Sarcin-Ricin motif","annotation":"","bp_signature":"cWW-tSH-tHH-cSH-tWH-tHS-L-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_96446.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-R-R-tWH-L-R-cWW"}, {"num_instances":1,"num_nucleotides":5,"alignment":{"IL_4QCN_075":["4QCN|1|A|A|2076","4QCN|1|A|G|2078","4QCN|1|A|A|2079","4QCN|1|A|U|2623","4QCN|1|A|U|2627"]},"motif_id":"IL_96591.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-cWW"}, {"num_instances":1,"num_nucleotides":26,"alignment":{"IL_1VX6_146":["1VX6|1|C|C|48","1VX6|1|C|C|49","1VX6|1|C|G|50","1VX6|1|C|C|51","1VX6|1|C|A|52","1VX6|1|C|G|53","1VX6|1|C|C|54","1VX6|1|C|A|55","1VX6|1|C|A|56","1VX6|1|C|A|57","1VX6|1|C|A|58","1VX6|1|C|U|59","1VX6|1|C|G|60","1VX6|1|C|C|61","1VX6|1|C|G|62","1VX6|1|C|A|63","1VX6|1|C|U|64","1VX6|1|C|A|65","1VX6|1|C|C|66","1VX6|1|C|G|67","1VX6|1|C|C|68","1VX6|1|C|G|99","1VX6|1|C|A|100","1VX6|1|C|A|101","1VX6|1|C|U|102","1VX6|1|C|G|103"]},"motif_id":"IL_97803.1","chainbreak":"21","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-cWW-tSS-cWW-cWW-bif-L-L-L-L-L-cWW-cSS-cSS-L-L-cWW"}, {"num_instances":1,"num_nucleotides":16,"alignment":{"IL_3U5H_011":["3U5H|1|5|U|169","3U5H|1|5|G|170","3U5H|1|5|G|171","3U5H|1|5|G|172","3U5H|1|5|G|173","3U5H|1|5|C|174","3U5H|1|5|G|244","3U5H|1|5|U|245","3U5H|1|5|U|246","3U5H|1|5|C|247","3U5H|1|5|U|248","3U5H|1|5|U|249","3U5H|1|5|U|250","3U5H|1|5|G|251","3U5H|1|5|U|252","3U5H|1|5|A|253"]},"motif_id":"IL_97842.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_98016.1","chainbreak":"6","common_name":"One or more bulged nucleotides","annotation":"One or more bulged nucleotides","bp_signature":"cWW-R-cWW"}, {"num_instances":3,"num_nucleotides":16,"alignment":{"IL_3U5H_005":["3U5H|1|5|C|31","3U5H|1|5|U|32","3U5H|1|5|G|33","3U5H|1|5|A|34","3U5H|1|5|A|35","3U5H|1|5|C|36","3U5H|1|5|U|37","3U5H|1|5|U|38","3U5H|1|5|A|45","3U5H|1|5|U|46","3U5H|1|5|C|47","3U5H|1|5|A|48","3U5H|1|5|U|50","3U5H|1|5|A|51","3U5H|1|5|A|52","3U5H|1|5|G|53"],"IL_4CUV_005":["4CUV|1|1|C|31","4CUV|1|1|U|32","4CUV|1|1|G|33","4CUV|1|1|A|34","4CUV|1|1|A|35","4CUV|1|1|C|36","4CUV|1|1|U|37","4CUV|1|1|U|38","4CUV|1|1|A|45","4CUV|1|1|U|46","4CUV|1|1|C|47","4CUV|1|1|A|48","4CUV|1|1|U|50","4CUV|1|1|A|51","4CUV|1|1|A|52","4CUV|1|1|G|53"],"IL_1VX6_003":["1VX6|1|A|C|31","1VX6|1|A|C|32","1VX6|1|A|G|33","1VX6|1|A|A|34","1VX6|1|A|A|35","1VX6|1|A|U|36","1VX6|1|A|U|37","1VX6|1|A|U|38","1VX6|1|A|A|45","1VX6|1|A|U|46","1VX6|1|A|A|47","1VX6|1|A|A|48","1VX6|1|A|U|50","1VX6|1|A|A|51","1VX6|1|A|A|52","1VX6|1|A|G|53"]},"motif_id":"IL_98073.2","chainbreak":"8","common_name":"Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.","annotation":"","bp_signature":"cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW"}, {"num_instances":2,"num_nucleotides":13,"alignment":{"IL_3U5H_130":["3U5H|1|5|U|3179","3U5H|1|5|C|3181","3U5H|1|5|G|3182","3U5H|1|5|A|3183","3U5H|1|5|A|3184","3U5H|1|5|U|3185","3U5H|1|5|A|3187","3U5H|1|5|G|3188","3U5H|1|5|C|3204","3U5H|1|5|G|3205","3U5H|1|5|C|3206","3U5H|1|5|G|3208","3U5H|1|5|A|3210"],"IL_4CUV_135":["4CUV|1|1|U|3179","4CUV|1|1|C|3181","4CUV|1|1|G|3182","4CUV|1|1|A|3183","4CUV|1|1|A|3184","4CUV|1|1|U|3185","4CUV|1|1|A|3187","4CUV|1|1|G|3188","4CUV|1|1|C|3204","4CUV|1|1|G|3205","4CUV|1|1|C|3206","4CUV|1|1|G|3208","4CUV|1|1|A|3210"]},"motif_id":"IL_98172.1","chainbreak":"8","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-L-L-cSS-L-cWW-cWW"}, {"num_instances":5,"num_nucleotides":7,"alignment":{"IL_3U5H_123":["3U5H|1|5|U|3047","3U5H|1|5|A|3048","3U5H|1|5|A|3049","3U5H|1|5|U|3050","3U5H|1|5|U|3051","3U5H|1|5|A|3091","3U5H|1|5|A|3094"],"IL_1VX6_124":["1VX6|1|A|C|3433","1VX6|1|A|A|3434","1VX6|1|A|A|3435","1VX6|1|A|U|3436","1VX6|1|A|U|3437","1VX6|1|A|A|3476","1VX6|1|A|G|3478"],"IL_4CUV_128":["4CUV|1|1|U|3047","4CUV|1|1|A|3048","4CUV|1|1|A|3049","4CUV|1|1|U|3050","4CUV|1|1|U|3051","4CUV|1|1|A|3091","4CUV|1|1|A|3094"],"IL_1FJG_013":["1FJG|1|A|U|304","1FJG|1|A|G|305","1FJG|1|A|G|306","1FJG|1|A|C|307","1FJG|1|A|C|308","1FJG|1|A|G|292","1FJG|1|A|G|293"],"IL_2AW7_016":["2AW7|1|A|U|304","2AW7|1|A|G|305","2AW7|1|A|A|306","2AW7|1|A|C|307","2AW7|1|A|C|308","2AW7|1|A|G|292","2AW7|1|A|G|293"]},"motif_id":"IL_98421.7","chainbreak":"5","common_name":"SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1","annotation":"C-loop like","bp_signature":"cWW-tHH-L-L-cWW"}, {"num_instances":1,"num_nucleotides":13,"alignment":{"IL_3U5H_095":["3U5H|1|5|C|2277","3U5H|1|5|C|2278","3U5H|1|5|A|2279","3U5H|1|5|A|2280","3U5H|1|5|U|2282","3U5H|1|5|G|2283","3U5H|1|5|C|2284","3U5H|1|5|C|2285","3U5H|1|5|U|2286","3U5H|1|5|G|2288","3U5H|1|5|C|2304","3U5H|1|5|G|2305","3U5H|1|5|G|2307"]},"motif_id":"IL_98655.1","chainbreak":"10","common_name":"Part of H71 Junction in 26S rRNA from Yeast","annotation":"","bp_signature":"cWW-L-cHW-L-L-tHH-tSW-L-cWW"}, {"num_instances":1,"num_nucleotides":9,"alignment":{"IL_3U5H_038":["3U5H|1|5|C|977","3U5H|1|5|G|978","3U5H|1|5|U|979","3U5H|1|5|A|980","3U5H|1|5|U|981","3U5H|1|5|C|982","3U5H|1|5|G|1101","3U5H|1|5|A|1102","3U5H|1|5|G|1104"]},"motif_id":"IL_98924.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-L-cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_99363.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-L-tSS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_2QBG_013":["2QBG|1|B|C|269","2QBG|1|B|A|270","2QBG|1|B|G|271","2QBG|1|B|C|366","2QBG|1|B|G|367","2QBG|1|B|A|368","2QBG|1|B|U|369","2QBG|1|B|G|370"]},"motif_id":"IL_99784.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":10,"alignment":{"IL_3Q1Q_008":["3Q1Q|1|B|G|236","3Q1Q|1|B|G|237","3Q1Q|1|B|U|239","3Q1Q|1|B|G|240","3Q1Q|1|B|U|253","3Q1Q|1|B|A|254","3Q1Q|1|B|U|255","3Q1Q|1|B|U|256","3Q1Q|1|B|C|257","3Q1Q|1|B|C|258"]},"motif_id":"IL_99937.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-R-R-tWS-L-R-cWW"}]