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This IL is a submotif of a 3WJ. The group is very homogeneous and conserved in Euk, Archael, and Bact LSU.","bp_signature":"cWW-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_13682.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cSH-tHW-cWW"}, 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Sheared (tSH-tHS)","annotation":"Almost all have zero bulged bases","bp_signature":"cWW-tSH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_4A1B_016":["4A1B|1|1|G|449","4A1B|1|1|C|450","4A1B|1|1|A|451","4A1B|1|1|U|452","4A1B|1|1|A|453","4A1B|1|1|A|454","4A1B|1|1|G|455","4A1B|1|1|U|523","4A1B|1|1|G|524","4A1B|1|1|U|526","4A1B|1|1|A|527","4A1B|1|1|C|528"]},"motif_id":"IL_15205.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-cSW-L-tHS-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_15709.1","chainbreak":"4","common_name":"Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)","annotation":"More than one motif | Single sheared with 1 to 3 bulged bases. More than one Motif. | This should be combined with the neighboring IL into one larger motif having two triples in major groove. | Single sheared with 1 to 3 bulged bases. More than one Motif.","bp_signature":"cWW-L-R-cWW"}, {"num_instances":2,"num_nucleotides":11,"alignment":{"IL_2AW7_066":["2AW7|1|A|A|1430","2AW7|1|A|A|1431","2AW7|1|A|G|1432","2AW7|1|A|A|1433","2AW7|1|A|A|1434","2AW7|1|A|G|1435","2AW7|1|A|C|1466","2AW7|1|A|C|1467","2AW7|1|A|A|1468","2AW7|1|A|C|1469","2AW7|1|A|U|1470"],"IL_4A1B_030":["4A1B|1|1|U|764","4A1B|1|1|A|765","4A1B|1|1|G|766","4A1B|1|1|C|767","4A1B|1|1|A|768","4A1B|1|1|G|769","4A1B|1|1|C|751","4A1B|1|1|C|752","4A1B|1|1|A|753","4A1B|1|1|A|754","4A1B|1|1|G|755"]},"motif_id":"IL_15840.2","chainbreak":"4","common_name":"Triple Sheared with unpaired, inserted A","annotation":"There is a third tHS pair, but it is ambiguous and not annotated consistently","bp_signature":"cWW-tSH-tSH-L-R-L-cWW"}, {"num_instances":3,"num_nucleotides":5,"alignment":{"IL_1U6B_010":["1U6B|1|B|A|150","1U6B|1|B|G|151","1U6B|1|B|U|160","1U6B|1|B|A|161","1U6B|1|B|U|162"],"IL_4FNJ_004":["4FNJ|1|A|A|11","4FNJ|1|A|G|12","4FNJ|1|A|U|25","4FNJ|1|A|A|26","4FNJ|1|A|U|27"],"IL_1NTB_001":["1NTB|1|B|G|114","1NTB|1|B|G|115","1NTB|1|A|C|5","1NTB|1|A|G|6","1NTB|1|A|C|7"]},"motif_id":"IL_16166.4","chainbreak":"2","common_name":"23S H91 IL","annotation":"More than one motif","bp_signature":"cWW-R-cWW"}, {"num_instances":2,"num_nucleotides":25,"alignment":{"IL_3U5H_057":["3U5H|1|5|G|1194","3U5H|1|5|A|1195","3U5H|1|5|A|1197","3U5H|1|5|C|1198","3U5H|1|5|C|1199","3U5H|1|5|A|1200","3U5H|1|5|C|1201","3U5H|1|5|A|1202","3U5H|1|5|A|1203","3U5H|1|5|A|1204","3U5H|1|5|A|1205","3U5H|1|5|U|1299","3U5H|1|5|G|1300","3U5H|1|5|A|1301","3U5H|1|5|A|1303","3U5H|1|5|A|1304","3U5H|1|5|G|1306","3U5H|1|5|G|1307","3U5H|1|5|A|1308","3U5H|1|5|U|1309","3U5H|1|5|G|1310","3U5H|1|5|G|1311","3U5H|1|5|C|1312","3U5H|1|5|G|1313","3U5H|1|5|C|1314"],"IL_4A1B_058":["4A1B|1|1|G|1221","4A1B|1|1|A|1222","4A1B|1|1|A|1224","4A1B|1|1|C|1225","4A1B|1|1|C|1226","4A1B|1|1|A|1227","4A1B|1|1|C|1228","4A1B|1|1|A|1229","4A1B|1|1|A|1230","4A1B|1|1|A|1231","4A1B|1|1|A|1232","4A1B|1|1|U|1326","4A1B|1|1|G|1327","4A1B|1|1|A|1328","4A1B|1|1|A|1330","4A1B|1|1|A|1331","4A1B|1|1|G|1333","4A1B|1|1|G|1334","4A1B|1|1|A|1335","4A1B|1|1|U|1336","4A1B|1|1|G|1337","4A1B|1|1|G|1338","4A1B|1|1|C|1339","4A1B|1|1|G|1340","4A1B|1|1|C|1341"]},"motif_id":"IL_16330.1","chainbreak":"2","common_name":"","annotation":"","bp_signature":"cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW"}, {"num_instances":3,"num_nucleotides":14,"alignment":{"IL_1FJG_031":["1FJG|1|A|G|683","1FJG|1|A|A|684","1FJG|1|A|G|685","1FJG|1|A|U|686","1FJG|1|A|A|687","1FJG|1|A|G|688","1FJG|1|A|C|699","1FJG|1|A|G|700","1FJG|1|A|C|701","1FJG|1|A|G|703","1FJG|1|A|A|704","1FJG|1|A|U|705","1FJG|1|A|A|706","1FJG|1|A|C|707"],"IL_4BPP_047":["4BPP|1|A|A|872","4BPP|1|A|G|873","4BPP|1|A|U|874","4BPP|1|A|C|875","4BPP|1|A|A|876","4BPP|1|A|G|877","4BPP|1|A|C|888","4BPP|1|A|U|889","4BPP|1|A|U|890","4BPP|1|A|G|892","4BPP|1|A|A|893","4BPP|1|A|U|894","4BPP|1|A|U|895","4BPP|1|A|U|896"],"IL_3V2F_084":["3V2F|1|A|G|2154","3V2F|1|A|G|2155","3V2F|1|A|G|2156","3V2F|1|A|G|2157","3V2F|1|A|A|2158","3V2F|1|A|G|2159","3V2F|1|A|C|2129","3V2F|1|A|U|2130","3V2F|1|A|G|2131","3V2F|1|A|G|2133","3V2F|1|A|A|2134","3V2F|1|A|A|2135","3V2F|1|A|C|2136","3V2F|1|A|C|2137"]},"motif_id":"IL_16415.2","chainbreak":"6","common_name":"SSU Helix 23 (h23) Kink-turn T. thermophilus","annotation":"has additional cWW AA pair","bp_signature":"cWW-L-R-tSH-tWH-tHS-tSS-tSS-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_17212.1","chainbreak":"6","common_name":"cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. 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More than one Motif.","bp_signature":"cWW-cSW-cWW"}, {"num_instances":1,"num_nucleotides":11,"alignment":{"IL_3V2F_060":["3V2F|1|A|G|1526","3V2F|1|A|G|1527","3V2F|1|A|A|1528","3V2F|1|A|A|1528|||A","3V2F|1|A|G|1529","3V2F|1|A|U|1540","3V2F|1|A|G|1541","3V2F|1|A|A|1542","3V2F|1|A|A|1544","3V2F|1|A|A|1545","3V2F|1|A|C|1546"]},"motif_id":"IL_17603.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-tSH-R-tHH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":17,"alignment":{"IL_4A1B_002":["4A1B|1|1|C|29","4A1B|1|1|U|30","4A1B|1|1|G|31","4A1B|1|1|A|32","4A1B|1|1|A|33","4A1B|1|1|C|34","4A1B|1|1|U|35","4A1B|1|1|U|36","4A1B|1|1|A|43","4A1B|1|1|U|44","4A1B|1|1|C|45","4A1B|1|1|A|46","4A1B|1|1|G|47","4A1B|1|1|U|48","4A1B|1|1|A|49","4A1B|1|1|A|50","4A1B|1|1|G|51"]},"motif_id":"IL_17682.1","chainbreak":"6","common_name":"Sarcin-ricin motif from Eukaryal LSU Helix 11","annotation":"LSU H11 Tetrahymena","bp_signature":"cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_3V2F_102":["3V2F|1|A|C|2695","3V2F|1|A|U|2696","3V2F|1|A|A|2711","3V2F|1|A|U|2712","3V2F|1|A|A|2712|||A","3V2F|1|A|A|2713","3V2F|1|A|G|2714"]},"motif_id":"IL_18675.1","chainbreak":"6","common_name":"cWW-bulge-cWW","annotation":"More than one motif. Poor superposition of instances!","bp_signature":"cWW-R-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_19898.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-cWW"}, {"num_instances":0,"num_nucleotides":0,"alignment":null,"motif_id":"IL_20530.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-L-L-L-cWW"}, {"num_instances":1,"num_nucleotides":7,"alignment":{"IL_2QBZ_002":["2QBZ|1|X|U|23","2QBZ|1|X|A|25","2QBZ|1|X|G|26","2QBZ|1|X|U|159","2QBZ|1|X|C|160","2QBZ|1|X|U|161","2QBZ|1|X|A|162"]},"motif_id":"IL_20775.1","chainbreak":"3","common_name":"tSH-inserted","annotation":"","bp_signature":"cWW-R-tHS-cWW"}, {"num_instances":1,"num_nucleotides":8,"alignment":{"IL_4BPP_050":["4BPP|1|A|C|1012","4BPP|1|A|G|1013","4BPP|1|A|A|1014","4BPP|1|A|U|1067","4BPP|1|A|C|1068","4BPP|1|A|U|1069","4BPP|1|A|U|1071","4BPP|1|A|G|1073"]},"motif_id":"IL_21077.1","chainbreak":"3","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-cWW"}, {"num_instances":1,"num_nucleotides":12,"alignment":{"IL_1FJG_011":["1FJG|1|A|C|242","1FJG|1|A|A|243","1FJG|1|A|C|245","1FJG|1|A|A|246","1FJG|1|A|G|247","1FJG|1|A|C|277","1FJG|1|A|G|278","1FJG|1|A|A|279","1FJG|1|A|G|281","1FJG|1|A|A|282","1FJG|1|A|C|283","1FJG|1|A|G|284"]},"motif_id":"IL_21254.1","chainbreak":"5","common_name":"SSU Helix 11 (h11) IL Kink-turn T. thermophilus","annotation":"","bp_signature":"cWW-tWH-cWW-tHS-tSS-R-R-cWW"}, {"num_instances":4,"num_nucleotides":8,"alignment":{"IL_3V2F_054":["3V2F|1|A|C|1437","3V2F|1|A|U|1438","3V2F|1|A|A|1439","3V2F|1|A|G|1440","3V2F|1|A|C|1551","3V2F|1|A|G|1552","3V2F|1|A|A|1553","3V2F|1|A|G|1555"],"IL_3V2F_011":["3V2F|1|A|A|357","3V2F|1|A|U|358","3V2F|1|A|A|359","3V2F|1|A|G|360","3V2F|1|A|C|280","3V2F|1|A|G|281","3V2F|1|A|A|282","3V2F|1|A|U|284"],"IL_1LNG_002":["1LNG|1|B|G|223","1LNG|1|B|U|224","1LNG|1|B|A|225","1LNG|1|B|G|226","1LNG|1|B|C|192","1LNG|1|B|G|193","1LNG|1|B|A|194","1LNG|1|B|C|198"],"IL_4IOA_055":["4IOA|1|X|C|1451","4IOA|1|X|U|1452","4IOA|1|X|A|1453","4IOA|1|X|U|1454","4IOA|1|X|A|1567","4IOA|1|X|A|1568","4IOA|1|X|A|1569","4IOA|1|X|G|1571"]},"motif_id":"IL_21333.2","chainbreak":"4","common_name":"tSH-tHW-bulge","annotation":"","bp_signature":"cWW-tWH-tHS-cWW"}, {"num_instances":1,"num_nucleotides":20,"alignment":{"IL_3V2F_083":["3V2F|1|A|G|2123","3V2F|1|A|G|2124","3V2F|1|A|G|2125","3V2F|1|A|A|2126","3V2F|1|A|G|2127","3V2F|1|A|C|2161","3V2F|1|A|G|2162","3V2F|1|A|C|2163","3V2F|1|A|C|2164","3V2F|1|A|G|2165","3V2F|1|A|G|2166","3V2F|1|A|U|2167","3V2F|1|A|G|2168","3V2F|1|A|A|2169","3V2F|1|A|A|2170","3V2F|1|A|A|2171","3V2F|1|A|U|2172","3V2F|1|A|A|2173","3V2F|1|A|C|2174","3V2F|1|A|C|2175"]},"motif_id":"IL_21421.1","chainbreak":"4","common_name":"","annotation":"","bp_signature":"cWW-L-R-tSH-tSS-tSS-tWH-tSH-R-R-R-R-R-R-cWW"}, {"num_instances":2,"num_nucleotides":14,"alignment":{"IL_2NZ4_009":["2NZ4|1|R|U|96","2NZ4|1|R|A|98","2NZ4|1|R|A|99","2NZ4|1|R|A|100","2NZ4|1|R|U|101","2NZ4|1|R|C|102","2NZ4|1|R|G|119","2NZ4|1|R|G|120","2NZ4|1|R|A|121","2NZ4|1|R|C|122","2NZ4|1|R|A|123","2NZ4|1|R|A|124","2NZ4|1|R|A|125","2NZ4|1|R|G|126"],"IL_2NZ4_013":["2NZ4|1|S|U|96","2NZ4|1|S|A|98","2NZ4|1|S|A|99","2NZ4|1|S|A|100","2NZ4|1|S|U|101","2NZ4|1|S|C|102","2NZ4|1|S|G|119","2NZ4|1|S|G|120","2NZ4|1|S|A|121","2NZ4|1|S|C|122","2NZ4|1|S|A|123","2NZ4|1|S|A|124","2NZ4|1|S|A|125","2NZ4|1|S|G|126"]},"motif_id":"IL_21495.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-R-R-R-tHW-tHW-bif-cWW"}, {"num_instances":2,"num_nucleotides":9,"alignment":{"IL_3U5F_075":["3U5F|1|6|C|1389","3U5F|1|6|U|1390","3U5F|1|6|A|1391","3U5F|1|6|U|1407","3U5F|1|6|G|1408","3U5F|1|6|G|1409","3U5F|1|6|A|1410","3U5F|1|6|A|1411","3U5F|1|6|G|1412"],"IL_4BPP_074":["4BPP|1|A|C|1359","4BPP|1|A|U|1360","4BPP|1|A|A|1361","4BPP|1|A|U|1378","4BPP|1|A|G|1379","4BPP|1|A|G|1380","4BPP|1|A|A|1381","4BPP|1|A|A|1382","4BPP|1|A|G|1383"]},"motif_id":"IL_21639.1","chainbreak":"6","common_name":"","annotation":"","bp_signature":"cWW-L-tWH-R-R-R-cWW"}, {"num_instances":4,"num_nucleotides":9,"alignment":{"IL_1FJG_061":["1FJG|1|A|C|1466","1FJG|1|A|G|1467","1FJG|1|A|A|1468","1FJG|1|A|G|1469","1FJG|1|A|C|1431","1FJG|1|A|G|1432","1FJG|1|A|A|1433","1FJG|1|A|A|1434","1FJG|1|A|G|1435"],"IL_2QBG_061":["2QBG|1|B|C|1526","2QBG|1|B|G|1527","2QBG|1|B|A|1528","2QBG|1|B|G|1529","2QBG|1|B|U|1542","2QBG|1|B|G|1543","2QBG|1|B|A|1544","2QBG|1|B|A|1545","2QBG|1|B|G|1546"],"IL_2QBG_075":["2QBG|1|B|U|1864","2QBG|1|B|U|1865","2QBG|1|B|A|1866","2QBG|1|B|G|1867","2QBG|1|B|C|1874","2QBG|1|B|G|1875","2QBG|1|B|A|1876","2QBG|1|B|A|1877","2QBG|1|B|G|1878"],"IL_2ZY6_001":["2ZY6|1|A|A|7","2ZY6|1|A|U|8","2ZY6|1|A|A|9","2ZY6|1|A|G|10","2ZY6|1|A|C|25","2ZY6|1|A|G|26","2ZY6|1|A|A|27","2ZY6|1|A|G|28","2ZY6|1|A|U|29"]},"motif_id":"IL_22732.1","chainbreak":"4","common_name":"tSH-inserted-tHS","annotation":"Two Groups! 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Forms multiple 3\u00b0 interactions. 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