#Varna 2DMotifNum NtsInstances
1
  • IL_01312.2
IL_01312.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Isolated non-canonical cWW with bulges (13)
  • Isolated cWH basepair (10)
  • UU cWW (8)
  • CA cWW (5)
  • CC cWW (4)
  • Intercalated tWH (3)
  • Self complementary (2)
  • AA cWW (2)
  • Isolated near basepair (2)
  • Single bulged G, near cWW (2)
  • Multiple bulged bases, near cWW (1)
  • Isolated cWS basepair (1)
  • CA cWW with bulged A (1)
  • Decoding loop related (1)
  • UU cWW water inserted (1)
  • UG cWW (1)
  • UC cWW (1)
  • 6276
    2
    • IL_80007.4
    IL_80007.4
    • Basepair signature: cWW-cWW
    • History status: Updated, 1 parent
  • Single bulged A (87)
  • Multiple bulged bases (6)
  • Basepair outside cWW (3)
  • Major groove intercalation (2)
  • Major groove platform outside cWW (2)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • Major groove platform (1)
  • Stack outside cWW (1)
  • 4110
    3
    • IL_83039.3
    IL_83039.3
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged U (66)
  • Multiple bulged bases (4)
  • 471
    4
    • IL_85877.4
    IL_85877.4
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (56)
  • Non canonical cWW and near pair (2)
  • 859
    5
    • IL_80663.5
    IL_80663.5
    • Basepair signature: cWW-tHS-cSH-cWW
    • History status: Exact match
  • Major groove platform (28)
  • Major groove platform; stack outside cWW (9)
  • 546
    6
    • IL_06437.5
    IL_06437.5
    • Basepair signature: cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform (42)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • Single bulged A (1)
  • 544
    7
    • IL_04038.1
    IL_04038.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single stack bend (20)
  • Decoding loop related (11)
  • Stack and bulge (2)
  • Not an internal loop (1)
  • Intercalated cWW (1)
  • 544
    8
    • IL_42589.2
    IL_42589.2
    • Basepair signature: cWW-cHW-cWW
    • History status: Updated, 1 parent
  • Isolated cWH basepair (34)
  • Isolated near basepair (4)
  • Self complementary (2)
  • Isolated non-canonical cWW with bulges (1)
  • 643
    9
    • IL_13730.3
    IL_13730.3
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (28)
  • Major groove outside cWW, minor groove, intercalation pocket (6)
  • 438
    10
    • IL_59137.3
    IL_59137.3
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged G (32)
  • SSU/LSU pseudoknot (2)
  • 436
    11
    • IL_29549.4
    IL_29549.4
    • Basepair signature: cWW-tSS-L-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (29)
  • Kink-turn with non-sequential stacking (5)
  • 1234
    12
    • IL_56467.4
    IL_56467.4
    • Basepair signature: cWW-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Triple sheared (27)
  • AAA cross-strand stack (5)
  • 1032
    13
    • IL_61258.3
    IL_61258.3
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged C (30)
  • Single bulged A (1)
  • 432
    14
    • IL_09705.4
    IL_09705.4
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (24)
  • Other IL (2)
  • tSH-tHW (1)
  • tWS-tSW (1)
  • 828
    15
    • IL_09061.1
    IL_09061.1
    • Basepair signature: cWW-cSH-cWS-cWW
    • History status: Exact match
  • Major groove minor groove platform; mini C-loop (12)
  • C-loop (7)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • 622
    16
    • IL_53523.3
    IL_53523.3
    • Basepair signature: cWW-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN (17)
  • UAA/GAN related (1)
  • 918
    17
    • IL_39521.3
    IL_39521.3
    • Basepair signature: cWW-tSH-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tHS (16)
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • 1017
    18
    • IL_70995.3
    IL_70995.3
    • Basepair signature: cWW-tHS-R-cWW
    • History status: Exact match
  • Major groove platform; stack outside cWW (12)
  • 616
    19
    • IL_87630.2
    IL_87630.2
    • Basepair signature: cWW-tSH-cSH-cWW
    • History status: Exact match
  • Major groove platform with extra pair (10)
  • Other IL (1)
  • 714
    20
    • IL_81326.1
    IL_81326.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
  • Decoding loop related (2)
  • 714
    21
    • IL_04346.3
    IL_04346.3
    • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin; G-bulge (14)
  • 1514
    22
    • IL_95485.4
    IL_95485.4
    • Basepair signature: cWW-cSH-cWW-cWW
    • History status: Exact match
  • Major groove platform with extra cWW (8)
  • Isolated basepair with bulged bases (3)
  • 714
    23
    • IL_75892.3
    IL_75892.3
    • Basepair signature: cWW-tSW-tWH-cSH-cWS-cWW
    • History status: Exact match
  • C-loop (14)
  • 714
    24
    • IL_50676.2
    IL_50676.2
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (5)
  • Pseudoknot (3)
  • Other IL (1)
  • 813
    25
    • IL_35110.3
    IL_35110.3
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin; G-bulge (8)
  • Sarcin-Ricin target in LSU H95; G-bulge (5)
  • 1313
    26
    • IL_38958.3
    IL_38958.3
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Isolated tHS basepair with bulges (12)
  • 612
    27
    • IL_67621.3
    IL_67621.3
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
  • Isolated cWS basepair (8)
  • Other IL (1)
  • 612
    28
    • IL_94431.3
    IL_94431.3
    • Basepair signature: cWW-cSH-cWS-cWW
    • History status: Exact match
  • Minor groove platform (10)
  • 611
    29
    • IL_03932.1
    IL_03932.1
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (4)
  • Minor groove platform (2)
  • Single stack bend (2)
  • Other IL (1)
  • 511
    30
    • IL_49607.4
    IL_49607.4
    • Basepair signature: cWW-tSH-tHW-cWW
    • History status: Exact match
  • tSH-tHW (7)
  • Other IL (1)
  • 811
    31
    • IL_35167.3
    IL_35167.3
    • Basepair signature: cWW-R-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN (2)
  • tSH-tHS-tHW (1)
  • UAA/GAN with extra pair (1)
  • Other IL (1)
  • 1010
    32
    • IL_19389.2
    IL_19389.2
    • Basepair signature: cWW-L-cSH-cWW
    • History status: Exact match
  • Major groove platform with intercalated tWH (5)
  • Left turn (3)
  • Other IL (1)
  • 69
    33
    • IL_81389.2
    IL_81389.2
    • Basepair signature: cWW-tSH-tHS-tHS-cWW
    • History status: Exact match
  • UAA/GAN related (5)
  • UAA/GAN variation (4)
  • 99
    34
    • IL_14526.1
    IL_14526.1
    • Basepair signature: cWW-cWW-tWW-cWW
    • History status: Exact match
  • tWW and non-canonical cWW (6)
  • Minor groove platform related (3)
  • 89
    35
    • IL_15421.1
    IL_15421.1
    • Basepair signature: cWW-cWW-cSH-cSH-cWW
    • History status: Exact match
  • 8-nt loop receptor (5)
  • Major groove minor groove platform with extra cWW (1)
  • Other IL (1)
  • 88
    36
    • IL_60676.3
    IL_60676.3
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • Minor groove platform (2)
  • Not an internal loop (1)
  • 58
    37
    • IL_81328.4
    IL_81328.4
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • Basepair outside cWW, intercalation pocket (5)
  • Stack outside cWW (2)
  • Major groove outside cWW, intercalation pocket (1)
  • 58
    38
    • IL_97601.4
    IL_97601.4
    • Basepair signature: cWW-tWH-cSH-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (7)
  • 87
    39
    • IL_15861.3
    IL_15861.3
    • Basepair signature: cWW-L-L-L-tSW-cSH-cWW
    • History status: Exact match
  • SSU/LSU pseudoknot (6)
  • 107
    40
    • IL_66584.3
    IL_66584.3
    • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tSH-tHH-tHS (3)
  • Quadruple sheared (2)
  • 127
    41
    • IL_43733.1
    IL_43733.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (5)
  • 67
    42
    • IL_94518.3
    IL_94518.3
    • Basepair signature: cWW-cWW-cWW-cWW-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • Other IL (1)
  • 127
    43
    • IL_58103.4
    IL_58103.4
    • Basepair signature: cWW-L-L-cWS-tSW-cWW
    • History status: Exact match
  • Symmetric double minor groove platform (5)
  • Minor groove platform (1)
  • 87
    44
    • IL_36612.2
    IL_36612.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged U (4)
  • 47
    45
    • IL_22946.1
    IL_22946.1
    • Basepair signature: cWW-cHH-cWW
    • History status: Exact match
  • Major groove platform (3)
  • Major groove intercalation (2)
  • 57
    46
    • IL_56455.1
    IL_56455.1
    • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
    • History status: Exact match
  • Bacterial 5S Loop E (6)
  • 186
    47
    • IL_66414.3
    IL_66414.3
    • Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
    • History status: Exact match
  • Triple sheared with non-canonical cWW (4)
  • 146
    48
    • IL_94181.2
    IL_94181.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Intercalated cWS (2)
  • Single stack bend with bulge (1)
  • Other IL (1)
  • Single base bend (1)
  • Not an internal loop (1)
  • 56
    49
    • IL_51265.1
    IL_51265.1
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW
    • History status: Exact match
  • Kink-turn from U4 (5)
  • Kink-turn from T-box riboswitch (1)
  • 106
    50
    • IL_90991.3
    IL_90991.3
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (4)
  • 46
    51
    • IL_54997.2
    IL_54997.2
    • Basepair signature: cWW-tWW-cWW
    • History status: Exact match
  • Isolated tWW turn (4)
  • Decoding loop with one bulged A (1)
  • 66
    52
    • IL_47154.3
    IL_47154.3
    • Basepair signature: cWW-cSW-L-R-cWW
    • History status: Exact match
    86
    53
    • IL_14148.3
    IL_14148.3
    • Basepair signature: cWW-cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform with extra cWW (5)
  • 76
    54
    • IL_17470.3
    IL_17470.3
    • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
    • History status: Exact match
  • tHW-tHW cross-strand stack (5)
  • 116
    55
    • IL_23544.1
    IL_23544.1
    • Basepair signature: cWW-L-R-R-cWW
    • History status: Exact match
    75
    56
    • IL_49767.2
    IL_49767.2
    • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN with extra cWW (3)
  • 115
    57
    • IL_29978.2
    IL_29978.2
    • Basepair signature: cWW-L-L-L-tHS-cWW
    • History status: Exact match
    95
    58
    • IL_02284.1
    IL_02284.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    65
    59
    • IL_83162.1
    IL_83162.1
    • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
    • History status: Exact match
    115
    60
    • IL_77853.2
    IL_77853.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged A (2)
  • Major groove intercalation (1)
  • Intercalation pocket (1)
  • 45
    61
    • IL_96042.1
    IL_96042.1
    • Basepair signature: cWW-cWW-cSH-R-cWW
    • History status: Exact match
  • Major groove minor groove platform with extra cWW (4)
  • 85
    62
    • IL_60695.2
    IL_60695.2
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    85
    63
    • IL_57188.1
    IL_57188.1
    • Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW
    • History status: Exact match
    115
    64
    • IL_08376.2
    IL_08376.2
    • Basepair signature: cWW-tWH-tSW-L-cWW
    • History status: Exact match
  • C-loop (5)
  • 75
    65
    • IL_60992.3
    IL_60992.3
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
    • History status: Exact match
    165
    66
    • IL_13506.1
    IL_13506.1
    • Basepair signature: cWW-L-R-R-cWW-cWW
    • History status: Exact match
  • Multiple bulged bases with near cWW (1)
  • UAA/GAN variation (1)
  • 95
    67
    • IL_98882.1
    IL_98882.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • Decoding loop related (2)
  • Intercalated tWH (1)
  • 55
    68
    • IL_55953.1
    IL_55953.1
    • Basepair signature: cWW-tSH-R-tHS-L-bif-cWW
    • History status: Exact match
    125
    69
    • IL_17069.1
    IL_17069.1
    • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
    • History status: Exact match
  • Kink-turn related (3)
  • 135
    70
    • IL_34626.3
    IL_34626.3
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    75
    71
    • IL_19954.1
    IL_19954.1
    • Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW
    • History status: Exact match
    124
    72
    • IL_45944.2
    IL_45944.2
    • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
    • History status: Exact match
    114
    73
    • IL_34915.2
    IL_34915.2
    • Basepair signature: cWW-R-tWH-cSH-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (4)
  • 94
    74
    • IL_90538.2
    IL_90538.2
    • Basepair signature: cWW-tSS-L-tSH-tSS-tHS-L-R-L-cWW
    • History status: Exact match
  • Kink-turn (4)
  • 134
    75
    • IL_97697.1
    IL_97697.1
    • Basepair signature: cWW-L-R-L-L-L-L-bif-cWW
    • History status: Exact match
  • Reverse turn (4)
  • 124
    76
    • IL_38634.3
    IL_38634.3
    • Basepair signature: cWW-cWH-L-R-cWW
    • History status: Exact match
  • cWH basepair and non-canonical AC (3)
  • tWW and near cWH (1)
  • 84
    77
    • IL_66745.3
    IL_66745.3
    • Basepair signature: cWW-L-R-tHS-cWW-cWW
    • History status: Exact match
    104
    78
    • IL_08296.1
    IL_08296.1
    • Basepair signature: cWW-tSH-R-R-cWW
    • History status: Exact match
    84
    79
    • IL_67474.2
    IL_67474.2
    • Basepair signature: cWW-R-R-cWW
    • History status: Exact match
    64
    80
    • IL_64824.1
    IL_64824.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    64
    81
    • IL_61017.1
    IL_61017.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    84
    82
    • IL_75461.2
    IL_75461.2
    • Basepair signature: cWW-cSS-L-R-R-cWW
    • History status: Exact match
    74
    83
    • IL_68506.1
    IL_68506.1
    • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW
    • History status: Exact match
    194
    84
    • IL_09732.3
    IL_09732.3
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: Exact match
  • Multiple bulged bases with non-canonical cWW (1)
  • 93
    85
    • IL_26769.1
    IL_26769.1
    • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS-cWW (3)
  • 123
    86
    • IL_71960.2
    IL_71960.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • Single bulged A (1)
  • 53
    87
    • IL_93830.2
    IL_93830.2
    • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)
  • 143
    88
    • IL_23663.3
    IL_23663.3
    • Basepair signature: cWW-cSH-cWW-cWW
    • History status: Exact match
    73
    89
    • IL_87284.1
    IL_87284.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (3)
  • 123
    90
    • IL_68780.1
    IL_68780.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (3)
  • 123
    91
    • IL_74051.1
    IL_74051.1
    • Basepair signature: cWW-tSS-L-tSH-tHS-L-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 113
    92
    • IL_83121.4
    IL_83121.4
    • Basepair signature: cWW-cSS-R-cWW
    • History status: Updated, 2 parents
  • 180 degree turn (1)
  • 53
    93
    • IL_27393.5
    IL_27393.5
    • Basepair signature: cWW-L-L-L-L-L-L-cWW
    • History status: Updated, 2 parents
    103
    94
    • IL_90600.1
    IL_90600.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    83
    95
    • IL_03317.1
    IL_03317.1
    • Basepair signature: cWW-cWW-cWW-cWW-cWW
    • History status: Exact match
    103
    96
    • IL_07931.2
    IL_07931.2
    • Basepair signature: cWW-L-R-R-cWW
    • History status: Exact match
    73
    97
    • IL_54678.1
    IL_54678.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    43
    98
    • IL_64239.1
    IL_64239.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged U (2)
  • 43
    99
    • IL_88269.2
    IL_88269.2
    • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
    • History status: Exact match
  • 6x5 Sarcin-Ricin; G-bulge (3)
  • 113
    100
    • IL_98853.1
    IL_98853.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    43
    101
    • IL_88488.1
    IL_88488.1
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • Major groove minor groove platform; mini C-loop (1)
  • 53
    102
    • IL_91482.4
    IL_91482.4
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (1)
  • 43
    103
    • IL_24606.1
    IL_24606.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)
  • 143
    104
    • IL_35904.1
    IL_35904.1
    • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
    • History status: Exact match
  • Kink-turn (3)
  • 123
    105
    • IL_08966.3
    IL_08966.3
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
  • CC cWW (1)
  • 63
    106
    • IL_34166.2
    IL_34166.2
    • Basepair signature: cWW-cWW
    • History status: Updated, 2 parents
  • Single bulged A (2)
  • 43
    107
    • IL_75283.1
    IL_75283.1
    • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
    • History status: Exact match
    183
    108
    • IL_24879.1
    IL_24879.1
    • Basepair signature: cWW-R-R-cWW
    • History status: Exact match
    63
    109
    • IL_92440.2
    IL_92440.2
    • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (3)
  • 143
    110
    • IL_64900.1
    IL_64900.1
    • Basepair signature: cWW-cWW-tSS-L-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (3)
  • 143
    111
    • IL_24905.4
    IL_24905.4
    • Basepair signature: cWW-L-cWS-cWW
    • History status: Exact match
    73
    112
    • IL_09129.1
    IL_09129.1
    • Basepair signature: cWW-tWH-tWH-L-R-L-tWW-cWW
    • History status: Exact match
    133
    113
    • IL_48280.1
    IL_48280.1
    • Basepair signature: cWW-tSH-R-cWW
    • History status: Exact match
    73
    114
    • IL_68057.1
    IL_68057.1
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
    • History status: Exact match
  • Kink-turn (3)
  • 123
    115
    • IL_79393.5
    IL_79393.5
    • Basepair signature: cWW-L-R-R-R-R-R-L-cWW
    • History status: Updated, 2 parents
    113
    116
    • IL_90106.3
    IL_90106.3
    • Basepair signature: cWW-tHH-tHS-cWW
    • History status: Exact match
    83
    117
    • IL_52451.5
    IL_52451.5
    • Basepair signature: cWW-cHW-cWW-cWW
    • History status: Updated, 2 parents
  • Tandem non-canonical cWW pairs (1)
  • 83
    118
    • IL_82426.2
    IL_82426.2
    • Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
    • History status: Exact match
    143
    119
    • IL_58960.1
    IL_58960.1
    • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
    • History status: Exact match
    113
    120
    • IL_53318.1
    IL_53318.1
    • Basepair signature: cWW-cWW-tWH-tSH-tHS-cWW
    • History status: Exact match
    102
    121
    • IL_65893.1
    IL_65893.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: New id, 2 parents
    72
    122
    • IL_95688.1
    IL_95688.1
    • Basepair signature: cWW-L-cSS-cSS-L-R-cWW
    • History status: Exact match
    112
    123
    • IL_05523.1
    IL_05523.1
    • Basepair signature: cWW-L-R-cWW-cSW-cSH-cWW
    • History status: Exact match
    102
    124
    • IL_37722.1
    IL_37722.1
    • Basepair signature: cWW-cWW-tSH-tWH-tHS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 142
    125
    • IL_10846.1
    IL_10846.1
    • Basepair signature: cWW-bif-cSH-cSW-cWW-cWW
    • History status: Exact match
    82
    126
    • IL_20065.1
    IL_20065.1
    • Basepair signature: cWW-tWH-cWW-tSS-cWW
    • History status: New id, 2 parents
  • Isolated non-canonical cWW with bulges (1)
  • 82
    127
    • IL_27378.1
    IL_27378.1
    • Basepair signature: cWW-bif-tSH-tSH-tHS-cWW
    • History status: Exact match
  • Other IL (1)
  • Triple sheared related (1)
  • 112
    128
    • IL_42032.1
    IL_42032.1
    • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
    • History status: Exact match
    112
    129
    • IL_02349.3
    IL_02349.3
    • Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with bulged A; G-bulge (2)
  • 132
    130
    • IL_18369.2
    IL_18369.2
    • Basepair signature: cWW-cSH-tHS-cWW
    • History status: Exact match
    82
    131
    • IL_27900.1
    IL_27900.1
    • Basepair signature: cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • Multiple bulged bases (1)
  • 52
    132
    • IL_03347.1
    IL_03347.1
    • Basepair signature: cWW-tSH-cWW-cWW
    • History status: Exact match
    72
    133
    • IL_16109.3
    IL_16109.3
    • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (2)
  • 102
    134
    • IL_77870.1
    IL_77870.1
    • Basepair signature: cWW-bif-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    132
    135
    • IL_18894.1
    IL_18894.1
    • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Quadruple sheared (2)
  • 122
    136
    • IL_28060.3
    IL_28060.3
    • Basepair signature: cWW-tHH-L-cWS-R-cWW
    • History status: Exact match
  • Major groove minor groove platform with tHH (2)
  • 82
    137
    • IL_80884.1
    IL_80884.1
    • Basepair signature: cWW-cWW-R-R-R-R-cWW
    • History status: Exact match
    102
    138
    • IL_64564.1
    IL_64564.1
    • Basepair signature: cWW-L-L-cWW
    • History status: New id, 2 parents
    62
    139
    • IL_35240.1
    IL_35240.1
    • Basepair signature: cWW-R-tHS-cWW
    • History status: Exact match
    72
    140
    • IL_39310.1
    IL_39310.1
    • Basepair signature: cWW-cWW-cSW-cSH-cWW
    • History status: New id, 2 parents
    92
    141
    • IL_16456.1
    IL_16456.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (2)
  • 112
    142
    • IL_57850.1
    IL_57850.1
    • Basepair signature: cWW-tHH-cWW
    • History status: Exact match
  • Isolated near basepair (1)
  • 62
    143
    • IL_96566.1
    IL_96566.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: New id, 2 parents
  • Tandem non-canonical cWW pairs (2)
  • 82
    144
    • IL_19217.1
    IL_19217.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: New id, 2 parents
  • Isolated non-canonical cWW with bulges (1)
  • Tandem non-canonical cWW pairs (1)
  • 72
    145
    • IL_51590.1
    IL_51590.1
    • Basepair signature: cWW-cSH-tWH-cSH-cWW-cWW
    • History status: Exact match
  • Other IL (1)
  • C-loop with extra cWW pair (1)
  • 92
    146
    • IL_16593.2
    IL_16593.2
    • Basepair signature: cWW-cWW
    • History status: Updated, 1 parent
  • Single bulged G (1)
  • 42
    147
    • IL_36143.2
    IL_36143.2
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    52
    148
    • IL_67703.1
    IL_67703.1
    • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-cSH-R-R-L-tHH-tHS-cWW
    • History status: Exact match
    222
    149
    • IL_96596.1
    IL_96596.1
    • Basepair signature: cWW-tSH-tHW-L-R-cWW-cWW
    • History status: Exact match
    122
    150
    • IL_70285.1
    IL_70285.1
    • Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW
    • History status: Exact match
    132
    151
    • IL_99373.1
    IL_99373.1
    • Basepair signature: cWW-bif-L-cWW
    • History status: Exact match
    72
    152
    • IL_00184.1
    IL_00184.1
    • Basepair signature: cWW-L-R-R-R-L-cWW
    • History status: Exact match
    92
    153
    • IL_34470.1
    IL_34470.1
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)
  • 172
    154
    • IL_45034.1
    IL_45034.1
    • Basepair signature: cWW-L-L-L-L-L-L-cWW
    • History status: Exact match
    102
    155
    • IL_78994.1
    IL_78994.1
    • Basepair signature: cWW-cSW-cWW-cWW
    • History status: Exact match
    82
    156
    • IL_19557.1
    IL_19557.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    52
    157
    • IL_70430.1
    IL_70430.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    82
    158
    • IL_81522.1
    IL_81522.1
    • Basepair signature: cWW-cSH-L-cWS-cWW
    • History status: Exact match
  • Major groove minor groove platform with intercalation; mini C-loop (2)
  • 72
    159
    • IL_22863.1
    IL_22863.1
    • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHH-tHS (2)
  • 162
    160
    • IL_25657.1
    IL_25657.1
    • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    132
    161
    • IL_19724.1
    IL_19724.1
    • Basepair signature: cWW-cSH-R-R-cWW
    • History status: Exact match
    72
    162
    • IL_86428.1
    IL_86428.1
    • Basepair signature: cWW-tHW-cWW-L-cSH-R-tHS-cWW-cWW
    • History status: Exact match
    122
    163
    • IL_95511.1
    IL_95511.1
    • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
    • History status: Exact match
    112
    164
    • IL_26351.1
    IL_26351.1
    • Basepair signature: cWW-cWW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS with extra cWW pairs (1)
  • 142
    165
    • IL_36973.3
    IL_36973.3
    • Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW
    • History status: Exact match
    142
    166
    • IL_29821.1
    IL_29821.1
    • Basepair signature: cWW-tWH-L-R-tHS-cWW
    • History status: Exact match
    101
    167
    • IL_41414.1
    IL_41414.1
    • Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW
    • History status: Exact match
    211
    168
    • IL_61812.1
    IL_61812.1
    • Basepair signature: cWW-cWW-tSH-tHW-cSH-tHH-tHS-cWW-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin; G-bulge (1)
  • 171
    169
    • IL_82988.1
    IL_82988.1
    • Basepair signature: cWW-cWW-L-L-tHS-cWW
    • History status: Exact match
    101
    170
    • IL_93585.1
    IL_93585.1
    • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
    • History status: Exact match
    111
    171
    • IL_01502.1
    IL_01502.1
    • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
    • History status: Exact match
    131
    172
    • IL_34780.1
    IL_34780.1
    • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 171
    173
    • IL_76900.1
    IL_76900.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 121
    174
    • IL_86571.1
    IL_86571.1
    • Basepair signature: cWW-cSW-tHS-cWW-cWW-cWW
    • History status: Exact match
    111
    175
    • IL_17765.1
    IL_17765.1
    • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
    • History status: Exact match
    141
    176
    • IL_68633.1
    IL_68633.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW
    • History status: Exact match
  • 9x7 Sarcin-Ricin with inserted C; G-bulge (1)
  • 161
    177
    • IL_90348.1
    IL_90348.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    71
    178
    • IL_41593.1
    IL_41593.1
    • Basepair signature: cWW-cHW-tHW-tHW-tHW-bif-cWW
    • History status: Exact match
    141
    179
    • IL_62654.1
    IL_62654.1
    • Basepair signature: cWW-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tHH-tHS (1)
  • 101
    180
    • IL_15795.1
    IL_15795.1
    • Basepair signature: cWW-cSH-R-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 61
    181
    • IL_45988.1
    IL_45988.1
    • Basepair signature: cWW-R-tWH-tHS-cWW
    • History status: Exact match
    91
    182
    • IL_77341.1
    IL_77341.1
    • Basepair signature: cWW-L-R-cWW
    • History status: New id, 1 parent
    61
    183
    • IL_95811.1
    IL_95811.1
    • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
    • History status: Exact match
  • Vitamin B12 Aptamer (1)
  • 111
    184
    • IL_06300.1
    IL_06300.1
    • Basepair signature: cWW-tSH-L-R-L-cWW
    • History status: Exact match
    91
    185
    • IL_17971.1
    IL_17971.1
    • Basepair signature: cWW-tWW-L-tWW-L-cWW
    • History status: Exact match
    101
    186
    • IL_38271.1
    IL_38271.1
    • Basepair signature: cWW-L-R-cSW-cWW
    • History status: Exact match
  • Self complementary (1)
  • 81
    187
    • IL_50631.1
    IL_50631.1
    • Basepair signature: cWW-L-R-cSW-cSH-cWW
    • History status: Exact match
    81
    188
    • IL_59724.1
    IL_59724.1
    • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)
  • 151
    189
    • IL_80355.1
    IL_80355.1
    • Basepair signature: cWW-tWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    231
    190
    • IL_11882.1
    IL_11882.1
    • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
    • History status: Exact match
    131
    191
    • IL_20245.1
    IL_20245.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW
    • History status: Exact match
    251
    192
    • IL_31504.1
    IL_31504.1
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
    • History status: Exact match
    181
    193
    • IL_53529.1
    IL_53529.1
    • Basepair signature: cWW-L-cWH-R-R-cWW
    • History status: Exact match
    81
    194
    • IL_62827.1
    IL_62827.1
    • Basepair signature: cWW-R-cWH-R-R-R-cWW
    • History status: Exact match
  • cWH basepair with bulged bases (1)
  • 101
    195
    • IL_94146.1
    IL_94146.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: New id, 1 parent
    71
    196
    • IL_23735.1
    IL_23735.1
    • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
    • History status: Exact match
    261
    197
    • IL_35058.1
    IL_35058.1
    • Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW
    • History status: Exact match
  • Symmetric double minor groove platform (1)
  • 91
    198
    • IL_46112.1
    IL_46112.1
    • Basepair signature: cWW-L-L-L-L-L-cWW
    • History status: Exact match
    91
    199
    • IL_56501.1
    IL_56501.1
    • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 131
    200
    • IL_66497.1
    IL_66497.1
    • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
    • History status: Exact match
    121
    201
    • IL_77408.1
    IL_77408.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    61
    202
    • IL_95942.1
    IL_95942.1
    • Basepair signature: cWW-L-R-L-L-L-L-L-cWW
    • History status: Exact match
    111
    203
    • IL_60171.1
    IL_60171.1
    • Basepair signature: cWW-L-tWH-R-R-R-cWW
    • History status: Exact match
  • Major groove platform; stack outside cWW (1)
  • 91
    204
    • IL_68913.1
    IL_68913.1
    • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
    • History status: Exact match
    141
    205
    • IL_80617.1
    IL_80617.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    206
    • IL_98353.1
    IL_98353.1
    • Basepair signature: cWW-cWS-L-L-cWW
    • History status: Exact match
    81
    207
    • IL_12750.1
    IL_12750.1
    • Basepair signature: cWW-L-R-cWW-L-R-R-R-R-L-L-cWW
    • History status: Exact match
    151
    208
    • IL_20463.1
    IL_20463.1
    • Basepair signature: cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 181
    209
    • IL_31807.1
    IL_31807.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    81
    210
    • IL_42092.1
    IL_42092.1
    • Basepair signature: cWW-tSH-L-L-L-cWW
    • History status: Exact match
  • Isolated basepair with bulged bases (1)
  • 91
    211
    • IL_54670.1
    IL_54670.1
    • Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW
    • History status: Exact match
    121
    212
    • IL_63750.1
    IL_63750.1
    • Basepair signature: cWW-tSS-cSS-tWW-L-tSH-R-R-cWW
    • History status: Exact match
    111
    213
    • IL_74184.1
    IL_74184.1
    • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
    • History status: Exact match
    111
    214
    • IL_15978.1
    IL_15978.1
    • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
    • History status: Exact match
    111
    215
    • IL_23807.1
    IL_23807.1
    • Basepair signature: cWW-L-L-L-L-L-cWW
    • History status: New id, 1 parent
    91
    216
    • IL_46401.1
    IL_46401.1
    • Basepair signature: cWW-L-L-L-L-tHH-cWW
    • History status: Exact match
    101
    217
    • IL_56693.1
    IL_56693.1
    • Basepair signature: cWW-R-R-tWH-L-R-cWW
    • History status: Exact match
    101
    218
    • IL_87677.1
    IL_87677.1
    • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (1)
  • 121
    219
    • IL_95993.1
    IL_95993.1
    • Basepair signature: cWW-R-tSS-tWW-tWW-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 111
    220
    • IL_18459.1
    IL_18459.1
    • Basepair signature: cWW-cWW-R-cWW
    • History status: Exact match
    71
    221
    • IL_50789.1
    IL_50789.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    71
    222
    • IL_69091.1
    IL_69091.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
    • History status: Exact match
    161
    223
    • IL_90922.1
    IL_90922.1
    • Basepair signature: cWW-tSH-tWH-tHS-tSS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 121
    224
    • IL_98711.1
    IL_98711.1
    • Basepair signature: cWW-tSH-tHW-tWW-cWW
    • History status: Exact match
  • tSH-tHW-tWW (1)
  • 101
    225
    • IL_13013.1
    IL_13013.1
    • Basepair signature: cWW-tWW-L-tWH-R-R-R-cSH-R-R-L-tHH-tHS-cWW
    • History status: Exact match
    211
    226
    • IL_21107.1
    IL_21107.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged U (1)
  • 41
    227
    • IL_31890.1
    IL_31890.1
    • Basepair signature: cWW-L-R-R-L-L-cWW
    • History status: Exact match
    91
    228
    • IL_42521.1
    IL_42521.1
    • Basepair signature: cWW-L-L-cWW-cWW
    • History status: Exact match
    81
    229
    • IL_74271.1
    IL_74271.1
    • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
    • History status: Exact match
    121
    230
    • IL_84315.1
    IL_84315.1
    • Basepair signature: cWW-tHS-cWS-R-tSW-R-R-cWW
    • History status: Exact match
    101
    231
    • IL_94351.1
    IL_94351.1
    • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
    • History status: Exact match
    111
    232
    • IL_23934.1
    IL_23934.1
    • Basepair signature: cWW-R-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW (1)
  • 91
    233
    • IL_46461.1
    IL_46461.1
    • Basepair signature: cWW-L-bif-L-cWW-cWW-cWW-L-cWW-tSW-L-L-L-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    311
    234
    • IL_56867.1
    IL_56867.1
    • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
    • History status: Exact match
    131
    235
    • IL_39287.1
    IL_39287.1
    • Basepair signature: cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW
    • History status: Exact match
    151
    236
    • IL_69457.1
    IL_69457.1
    • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    131
    237
    • IL_13394.1
    IL_13394.1
    • Basepair signature: cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    221
    238
    • IL_21121.1
    IL_21121.1
    • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
    • History status: Exact match
    111
    239
    • IL_32181.1
    IL_32181.1
    • Basepair signature: cWW-cWW-cWW-L-cSW-L-R-R-R-cWW
    • History status: Exact match
    151
    240
    • IL_54896.1
    IL_54896.1
    • Basepair signature: cWW-L-L-L-L-L-L-tSS-cWW
    • History status: Exact match
    121
    241
    • IL_74719.1
    IL_74719.1
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (1)
  • 81
    242
    • IL_84409.1
    IL_84409.1
    • Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW
    • History status: Exact match
    231
    243
    • IL_03420.1
    IL_03420.1
    • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
    • History status: Exact match
    131
    244
    • IL_16160.1
    IL_16160.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    245
    • IL_24106.1
    IL_24106.1
    • Basepair signature: cWW-tSH-tWH-tWH-R-R-R-R-R-R-R-cWW
    • History status: Exact match
    171
    246
    • IL_46732.1
    IL_46732.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    81
    247
    • IL_78120.1
    IL_78120.1
    • Basepair signature: cWW-tSH-tHS-tHS-bif-cWW
    • History status: Exact match
    121
    248
    • IL_96335.1
    IL_96335.1
    • Basepair signature: cWW-cSH-L-tSH-cWW-R-R-cWW
    • History status: Exact match
    111
    249
    • IL_19048.1
    IL_19048.1
    • Basepair signature: cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW
    • History status: Exact match
    141
    250
    • IL_28512.1
    IL_28512.1
    • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    131
    251
    • IL_51366.1
    IL_51366.1
    • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
    • History status: Exact match
    201
    252
    • IL_69573.1
    IL_69573.1
    • Basepair signature: cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW
    • History status: Exact match
    171
    253
    • IL_98876.1
    IL_98876.1
    • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
    • History status: Exact match
    131
    254
    • IL_22436.1
    IL_22436.1
    • Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 111
    255
    • IL_33557.1
    IL_33557.1
    • Basepair signature: cWW-cWW-tHH-L-R-R-R-L-L-L-cWW
    • History status: Exact match
    141
    256
    • IL_74736.1
    IL_74736.1
    • Basepair signature: cWW-tSH-L-R-R-L-cWW
    • History status: Exact match
    91
    257
    • IL_85630.1
    IL_85630.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
    • History status: Exact match
    151
    258
    • IL_94501.1
    IL_94501.1
    • Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW
    • History status: Exact match
    151
    259
    • IL_47108.1
    IL_47108.1
    • Basepair signature: cWW-tHH-L-R-R-R-cWW
    • History status: Exact match
    101
    260
    • IL_78437.1
    IL_78437.1
    • Basepair signature: cWW-tSH-tSH-tHS-L-cWW
    • History status: Exact match
  • Triple sheared related (1)
  • 111
    261
    • IL_89055.1
    IL_89055.1
    • Basepair signature: cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW
    • History status: Exact match
    161
    262
    • IL_28564.1
    IL_28564.1
    • Basepair signature: cWW-L-R-cWW-cWW
    • History status: Exact match
    81
    263
    • IL_39441.1
    IL_39441.1
    • Basepair signature: cWW-cWW-tHH-cWW
    • History status: Exact match
    81
    264
    • IL_69979.1
    IL_69979.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    121
    265
    • IL_92343.1
    IL_92343.1
    • Basepair signature: cWW-L-R-R-R-L-L-cWW
    • History status: Exact match
    101
    266
    • IL_22745.1
    IL_22745.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    51
    267
    • IL_44325.1
    IL_44325.1
    • Basepair signature: cWW-cWH-R-cWW
    • History status: Exact match
    61
    268
    • IL_55666.1
    IL_55666.1
    • Basepair signature: cWW-R-cWH-L-L-L-cWW
    • History status: Exact match
    91
    269
    • IL_64842.1
    IL_64842.1
    • Basepair signature: cWW-L-L-L-tWH-cSH-cWW
    • History status: Exact match
    101
    270
    • IL_85661.1
    IL_85661.1
    • Basepair signature: cWW-R-bif-tHW-tHS-cWW
    • History status: Exact match
    101
    271
    • IL_78906.1
    IL_78906.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    71
    272
    • IL_89197.1
    IL_89197.1
    • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
    • History status: Exact match
    111
    273
    • IL_28999.1
    IL_28999.1
    • Basepair signature: cWW-R-R-R-tSW-L-cWW
    • History status: Exact match
    101
    274
    • IL_39507.1
    IL_39507.1
    • Basepair signature: cWW-L-R-L-L-L-cWW
    • History status: Exact match
    91
    275
    • IL_51877.1
    IL_51877.1
    • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
    • History status: Exact match
    131
    276
    • IL_61242.1
    IL_61242.1
    • Basepair signature: cWW-cWW-L-R-cWW-cWW
    • History status: Exact match
    101
    277
    • IL_22821.1
    IL_22821.1
    • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
    • History status: Exact match
  • Pseudoknot (1)
  • 171
    278
    • IL_55896.1
    IL_55896.1
    • Basepair signature: cWW-tSH-tHS-tWS-cWW
    • History status: Exact match
  • tSH-tHS-tWS (1)
  • 101
    279
    • IL_94878.1
    IL_94878.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    261
    280
    • IL_16702.1
    IL_16702.1
    • Basepair signature: cWW-tSH-tWH-tHW-cWH-tSS-tHW-tHH-cWW
    • History status: Exact match
    151
    281
    • IL_36582.1
    IL_36582.1
    • Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with inserted A; G-bulge (1)
  • 141
    282
    • IL_47743.1
    IL_47743.1
    • Basepair signature: cWW-cSW-tWH-cSH-L-cWS-cWW
    • History status: Exact match
    91
    283
    • IL_58390.1
    IL_58390.1
    • Basepair signature: cWW-bif-tSW-L-L-L-cWW-cSW-R-cWW
    • History status: Exact match
    141
    284
    • IL_67834.1
    IL_67834.1
    • Basepair signature: cWW-R-R-R-R-R-R-tWW-R-R-R-R-R-R-R-R-R-R-R-R-cWW
    • History status: Exact match
    241
    285
    • IL_89731.1
    IL_89731.1
    • Basepair signature: cWW-R-tWH-R-R-R-cWW
    • History status: Exact match
    101
    286
    • IL_96878.1
    IL_96878.1
    • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
    • History status: Exact match
    121
    287
    • IL_29509.1
    IL_29509.1
    • Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    151
    288
    • IL_51971.1
    IL_51971.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    289
    • IL_93094.1
    IL_93094.1
    • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
    • History status: Exact match
  • Reverse kink-turn (1)
  • 111
    290
    • IL_99645.1
    IL_99645.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Single bulged G (1)
  • 41
    291
    • IL_00587.1
    IL_00587.1
    • Basepair signature: cWW-tSH-L-R-L-L-cWW
    • History status: Exact match
    101
    292
    • IL_14397.1
    IL_14397.1
    • Basepair signature: cWW-tWH-tHH-tHS-cWW
    • History status: Exact match
    101
    293
    • IL_34590.1
    IL_34590.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 181
    294
    • IL_45257.1
    IL_45257.1
    • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-tHH-cWW
    • History status: Exact match
    141
    295
    • IL_65055.1
    IL_65055.1
    • Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    231
    296
    • IL_75840.1
    IL_75840.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    297
    • IL_85931.1
    IL_85931.1
    • Basepair signature: cWW-cSW-tSH-tHH-tSS-tSS-R-R-cWW
    • History status: Exact match
    131
    298
    • IL_04667.1
    IL_04667.1
    • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
    • History status: Exact match
    131
    299
    • IL_58819.1
    IL_58819.1
    • Basepair signature: cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW
    • History status: Exact match
    171
    300
    • IL_96942.1
    IL_96942.1
    • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
    • History status: Exact match
    141
    301
    • IL_39651.1
    IL_39651.1
    • Basepair signature: cWW-cSH-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (1)
  • 51
    302
    • IL_61275.1
    IL_61275.1
    • Basepair signature: cWW-L-R-tHW-cWW
    • History status: Exact match
    81
    303
    • IL_70801.1
    IL_70801.1
    • Basepair signature: cWW-L-R-R-tWW-cWW-cWW-cWW
    • History status: Exact match
    131
    304
    • IL_93270.1
    IL_93270.1
    • Basepair signature: cWW-L-L-cWS-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 71
    305
    • IL_99902.1
    IL_99902.1
    • Basepair signature: cWW-L-R-R-R-R-R-cWW
    • History status: Exact match
    101
    306
    • IL_45481.1
    IL_45481.1
    • Basepair signature: cWW-L-R-cHW-L-L-tSW-L-cWW
    • History status: Exact match
    131
    307
    • IL_56105.1
    IL_56105.1
    • Basepair signature: cWW-tHS-cSH-tHS-cWW
    • History status: Exact match
    81
    308
    • IL_65320.1
    IL_65320.1
    • Basepair signature: cWW-L-R-R-R-L-tHW-L-R-R-L-cWW
    • History status: Exact match
    151
    309
    • IL_04736.1
    IL_04736.1
    • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
    • History status: Exact match
    121
    310
    • IL_79734.1
    IL_79734.1
    • Basepair signature: cWW-R-R-R-R-cWW
    • History status: Exact match
    81
    311
    • IL_90157.1
    IL_90157.1
    • Basepair signature: cWW-L-L-L-L-tHH-cWS-cWW
    • History status: Exact match
    121
    312
    • IL_97253.1
    IL_97253.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-L-cWW
    • History status: Exact match
    141

    Coloring options:


    Exact match 294; Updated, 1 parent 4; New id, 2 parents 6; New id, 1 parent 3; Updated, 2 parents 5;

    Copyright 2024 BGSU RNA group. Page generated in 0.0439 s