#IFECompound(s)RNA source organismTitleMethodResolutionDate
12Q1R|A (rep)Crystal Structure Analysis of the RNA Dodecamer CGCGAAUUAGCG, with a G-A mismatch.X-RAY DIFFRACTION1.122007-10-30
2157D|ACRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRSX-RAY DIFFRACTION1.81994-05-31
317RA|ABRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURESSOLUTION NMR1999-04-20
41A34|BSATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEXX-RAY DIFFRACTION1.811998-04-29
51AC3|ASOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURESSOLUTION NMR1997-06-16
61AL5|Asynthetic constructA-TRACT RNA DODECAMER, NMR, 12 STRUCTURESSOLUTION NMR1997-12-17
71CX5|AANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONESOLUTION NMR1999-09-14
81DI2|CCRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONSX-RAY DIFFRACTION1.91999-12-02
91DRR|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURESSOLUTION NMR1998-04-22
101EFO|BCRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG)X-RAY DIFFRACTION2.32000-05-29
111FIX|ATHE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASEX-RAY DIFFRACTION2.31996-12-11
121G4Q|ARNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTGX-RAY DIFFRACTION1.152003-07-08
131JB8|AThe Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular IntercalationX-RAY DIFFRACTION2.382003-07-01
141OO7|ADNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURESSOLUTION NMR2003-11-11
151PJG|ARNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTGX-RAY DIFFRACTION1.152003-12-09
161PJO|ACrystal Structure of an RNA/DNA hybrid of HIV-1 PPTX-RAY DIFFRACTION1.12003-12-09
171R9S|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDEX-RAY DIFFRACTION4.252004-11-16
181R9T|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.52004-11-16
191RC7|BCrystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom ResolutionX-RAY DIFFRACTION2.152004-03-30
201RNA|ACRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2X-RAY DIFFRACTION2.251991-04-15
211RRD|ADNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURESSOLUTION NMR1998-04-22
221RRR|ARNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURESSOLUTION NMR1998-04-22
231SFO|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.612004-03-02
241Y1W|PComplete RNA Polymerase II elongation complexX-RAY DIFFRACTION42005-01-04
251Y77|PComplete RNA Polymerase II elongation complex with substrate analogue GMPCPPX-RAY DIFFRACTION4.52005-01-04
261YY0|ACrystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-RAY DIFFRACTION3.22005-10-18
271YYK|CCrystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolutionX-RAY DIFFRACTION2.52005-11-22
281YYO|CCrystal structure of RNase III mutant E110K from Aquifex aeolicus complexed with double-stranded RNA at 2.9-Angstrom ResolutionX-RAY DIFFRACTION2.92005-11-22
291YYW|ECrystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom ResolutionX-RAY DIFFRACTION2.82005-11-22
301YZD|ACrystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pairX-RAY DIFFRACTION2.352005-10-18
311Z79|ACrystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-RAY DIFFRACTION2.552005-10-18
321Z7F|ACrystal structure of 16 base pair RNA duplex containing a C-A mismatchX-RAY DIFFRACTION2.12005-10-18
331ZBI|CBacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybridX-RAY DIFFRACTION1.852005-07-12
341ZBL|CBacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybridX-RAY DIFFRACTION2.22005-07-12
35205D|ASTRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOPX-RAY DIFFRACTION2.641995-09-15
36219D|ADNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETYSOLUTION NMR1995-10-15
37280D|ATHE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITESX-RAY DIFFRACTION2.41996-09-30
382E2H|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.952006-12-12
392E2I|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.412006-12-19
402G92|ACrystal Structure Analysis of the RNA Dodecamer CGC-(NF2)-AAUUAGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)X-RAY DIFFRACTION1.612006-04-18
412H1M|ASynthesis, Oxidation Behavior, Crystallization and Structure of 2'-Methylseleno Guanosine Containing RNAsX-RAY DIFFRACTION2.92006-07-18
422JA5|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex AX-RAY DIFFRACTION3.82007-02-20
432JA6|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex BX-RAY DIFFRACTION42007-02-20
442JA7|3synthetic constructCPD lesion containing RNA Polymerase II elongation complex CX-RAY DIFFRACTION3.82007-02-20
452JA8|Psynthetic constructCPD lesion containing RNA Polymerase II elongation complex DX-RAY DIFFRACTION3.82007-02-20
462JXQ|ANMR structure of RNA duplexSOLUTION NMR2008-05-20
472JXS|ANMR structure of RNA duplex containing single adenosine bulgeSOLUTION NMR2008-05-20
482KP3|AStructure of ANA-RNA hybrid duplexSOLUTION NMR2010-02-09
492KP4|AStructure of 2'F-ANA/RNA hybrid duplexSOLUTION NMR2010-02-09
502KXZ|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAASOLUTION NMR2010-06-02
512KY0|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAGSOLUTION NMR2010-06-02
522KY1|AThe Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAUSOLUTION NMR2010-06-02
532NUG|CCrystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 1.7-Angstrom ResolutionX-RAY DIFFRACTION1.72007-11-20
542NVQ|Rsynthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.92006-12-12
552NVT|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPPX-RAY DIFFRACTION3.362006-12-12
562NVX|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.62006-12-19
572NVZ|RRNA Polymerase II elongation complex with UTP, updated 11/2006X-RAY DIFFRACTION4.32006-12-19
582Q1O|ACrystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2)X-RAY DIFFRACTION1.12007-10-30
592QK9|BHuman RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybridX-RAY DIFFRACTION2.552007-11-13
602QKB|CHuman RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybridX-RAY DIFFRACTION2.42007-11-13
612QKK|CHuman RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybridX-RAY DIFFRACTION3.22007-11-13
622R7Z|PCisplatin lesion containing RNA polymerase II elongation complexX-RAY DIFFRACTION3.82007-11-20
632R92|TElongation complex of RNA polymerase II with artificial RdRP scaffoldX-RAY DIFFRACTION3.82007-11-27
642VUM|Psynthetic constructAlpha-amanitin inhibited complete RNA polymerase II elongation complexX-RAY DIFFRACTION3.42008-06-17
652YU9|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.42007-04-24
66353D|ACRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTUREX-RAY DIFFRACTION2.41997-11-10
67397D|AA 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATIONX-RAY DIFFRACTION1.31998-09-11
683ADL|BStructure of TRBP2 and its molecule implications for miRNA processingX-RAY DIFFRACTION2.22010-05-26
693BSU|DHybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNAX-RAY DIFFRACTION2.12008-03-25
703CGP|BX-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex bound to iodide ionsX-RAY DIFFRACTION1.572008-07-01
713CGQ|BX-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplexX-RAY DIFFRACTION2.552008-07-01
723CGR|BX-ray structure containing the pseudouridylated U2 snRNA and intron branch site consensus sequencesX-RAY DIFFRACTION2.12008-07-01
733CGS|BX-ray structure containing the pseudouridylated U2 snRNA and mammalian intron branch site consensus sequencesX-RAY DIFFRACTION1.652008-07-01
743GTG|RBacktracked RNA polymerase II complex with 12mer RNAX-RAY DIFFRACTION3.782009-06-09
753GTJ|RBacktracked RNA polymerase II complex with 13mer RNAX-RAY DIFFRACTION3.422009-06-09
763GTL|RBacktracked RNA polymerase II complex with 13mer with G<>U mismatchX-RAY DIFFRACTION3.382009-06-09
773GTM|MCo-complex of Backtracked RNA polymerase II with TFIISX-RAY DIFFRACTION3.82009-06-09
783GTO|RBacktracked RNA polymerase II complex with 15mer RNAX-RAY DIFFRACTION42009-06-09
793GTP|RBacktracked RNA polymerase II complex with 24mer RNAX-RAY DIFFRACTION3.92009-06-09
803GTQ|RBacktracked RNA polymerase II complex induced by damageX-RAY DIFFRACTION3.82009-06-09
813HOU|3Complete RNA polymerase II elongation complex I with a T-U mismatchX-RAY DIFFRACTION3.22009-07-28
823HOV|PComplete RNA polymerase II elongation complex IIX-RAY DIFFRACTION3.52009-07-28
833HOW|3Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridineX-RAY DIFFRACTION3.62009-07-28
843HOX|PComplete RNA polymerase II elongation complex VX-RAY DIFFRACTION3.652009-07-28
853HOY|PComplete RNA polymerase II elongation complex VIX-RAY DIFFRACTION3.42009-07-28
863HOZ|PComplete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanineX-RAY DIFFRACTION3.652009-07-28
873I4M|P8-oxoguanine containing RNA polymerase II elongation complex DX-RAY DIFFRACTION3.72009-09-08
883I4N|P8-oxoguanine containing RNA polymerase II elongation complex EX-RAY DIFFRACTION3.92009-09-08
893LRN|CCrystal structure of human RIG-I CTD bound to a 14 bp GC 5' ppp dsRNAX-RAY DIFFRACTION2.62010-06-02
903M3Y|RRNA polymerase II elongation complex CX-RAY DIFFRACTION3.182010-05-12
913M4O|RRNA polymerase II elongation complex BX-RAY DIFFRACTION3.572010-05-12
923NCU|CStructural and functional insights into pattern recognition by the innate immune receptor RIG-IX-RAY DIFFRACTION2.552010-06-30
933OG8|CCrystal structure of human RIG-I CTD bound to a 14-bp blunt-ended dsRNAX-RAY DIFFRACTION2.42010-11-03
94404D|ACRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC)X-RAY DIFFRACTION2.51998-12-14
95405D|ASTRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHESX-RAY DIFFRACTION2.51999-01-13

Release history

Release0.170.18
Date2011-05-142011-05-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength