BGSU RNA Site //

Equivalence class NR_2.5_18586.54 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17UOO|1|3 (rep)5S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
27V08|1|35S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
37ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
48AGX|1|h5S rRNASaccharomyces cerevisiaeEukaryaYeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
57TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
67UQB|1|35S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
77UQZ|1|35S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15
87ZUX|1|45S ribosomal RNASaccharomyces cerevisiaeEukaryaCollided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
98AAF|1|h5S rRNASaccharomyces cerevisiaeEukaryaYeast RQC complex in state GElectron microscopy2.52023-03-08

Release history

Release3.274
Date2023-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_18586.54NR_2.5_18586.533.274(5) 7ZUX|1|4, 7TOP|1|A5S, 8AGX|1|h, 8AAF|1|h, 7ZW0|1|LC(4) 7UQZ|1|3, 7UQB|1|3, 7UOO|1|3, 7V08|1|3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_18586.54NR_2.5_18586.553.275(9) 7TOP|1|A5S, 7UOO|1|3, 7UQB|1|3, 7UQZ|1|3, 7V08|1|3, 7ZUX|1|4, 7ZW0|1|LC, 8AAF|1|h, 8AGX|1|h(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
27ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
38AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
48AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
57TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
67UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43120
77UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34120
87UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44120
97V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36120