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Equivalence class NR_2.5_56726.101 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|AA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
38B0X|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coli BBacteriaRF00177Translating 70S ribosome in the unrotated state (P and E, tRNAs)Electron microscopy1.552022-11-30
48AYE|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177E. coli 70S ribosome bound to thermorubin and fMet-tRNAElectron microscopy1.962023-03-01
57K00|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
68G6W|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPheElectron microscopy2.022023-04-05
78EMM|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substratesElectron microscopy2.12023-05-31
88EIU|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177E. coli 70S ribosome with A-loop mutations U2554C and U2555CElectron microscopy2.242023-02-01
97S1H|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
107N1P|1|16Small subunit ribosomal RNA16S rRNA, mRNAEscherichia coli K-12BacteriaRF00177Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
118AKN|1|BSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coli BW25113BacteriaRF00177Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosomeElectron microscopy2.32023-03-08
127S1K|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
137S1J|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
147S1I|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
157S1G|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
167O1A|1|AASmall subunit ribosomal RNARibosomal RNA 16SEscherichia coli K-12BacteriaRF00177Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
177PJS|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20

Release history

Release3.2853.2863.2873.2883.2893.2903.291
Date2023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_56726.101NR_2.5_56726.1003.285(16) 4YBB|1|AA, 8G6W|1|A, 8EIU|1|A, 8B0X|1|A, 8AYE|1|A, 8AKN|1|B, 7S1K|1|C, 7S1J|1|C, 7S1I|1|C, 7S1H|1|C, 7S1G|1|C, 7PJS|1|a, 7O1A|1|AA, 7N1P|1|16, 7K00|1|A, 4YBB|1|BA(1) 8EMM|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_56726.101NR_2.5_56726.1023.292(17) 7N1P|1|16, 7K00|1|A, 4YBB|1|BA, 4YBB|1|AA, 8G6W|1|A, 8EMM|1|A, 8EIU|1|A, 8B0X|1|A, 8AYE|1|A, 8AKN|1|B, 7S1K|1|C, 7S1J|1|C, 7S1I|1|C, 7S1H|1|C, 7S1G|1|C, 7PJS|1|a, 7O1A|1|AA(0) (1) 8CEP|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17O1A|1|AACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.41523
28B0X|1|ATranslating 70S ribosome in the unrotated state (P and E, tRNAs)ELECTRON MICROSCOPY1.551489
37S1J|1|CWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.471540
47S1K|1|CCfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.421540
57S1H|1|CWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.351540
67S1G|1|Cwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.481540
77S1I|1|CWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.481540
88AYE|1|AE. coli 70S ribosome bound to thermorubin and fMet-tRNAELECTRON MICROSCOPY1.961508
98AKN|1|BCryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosomeELECTRON MICROSCOPY2.31510
108G6W|1|AStructure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPheELECTRON MICROSCOPY2.021508
118EMM|1|AComposite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substratesELECTRON MICROSCOPY2.11508
127K00|1|AStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.981508
138EIU|1|AE. coli 70S ribosome with A-loop mutations U2554C and U2555CELECTRON MICROSCOPY2.241508
147N1P|1|16Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.331531
157PJS|1|aStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.35660
164YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523
174YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
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