#IFECompound(s)RNA source organismTitleMethodResolutionDate
13C3Z|1|A+ 3C3Z|1|B (rep)HIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycinX-RAY DIFFRACTION1.52008-05-06
21Y99|1|A+ 1Y99|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.42004-12-21
31NLC|1|B+ 1NLC|1|AHIV-1 DIS(MAL) genomic RNAHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.852003-05-13
4462D|1|B+ 462D|1|ARNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3')CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.31999-12-02
52OIJ|1|A+ 2OIJ|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.312007-02-13
62QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS genomic RNAHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.82008-05-06
73FAR|1|A+ 3FAR|1|BRNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3')Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.42009-11-24
82OIY|1|A+ 2OIY|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.62007-12-25
93C44|1|A+ 3C44|1|BHIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION22008-05-06
103DVV|1|A+ 3DVV|1|BHIV-1 genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION22008-08-12
113C7R|1|A+ 3C7R|1|BHIV-1 subtype F genomic RNACrystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycinX-RAY DIFFRACTION1.72008-05-06
123C5D|1|A+ 3C5D|1|B'HIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycinX-RAY DIFFRACTION1.82008-05-06

Release history

Release2.1242.1252.1262.1272.1282.1292.1302.131
Date2017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-11

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12QEK|1|A+2QEK|1|BHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.823
21NLC|1|B+1NLC|1|AHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.8526
3462D|1|B+462D|1|ACRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.326
41Y99|1|A+1Y99|1|BHIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.426
52OIJ|1|A+2OIJ|1|BHIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.3123
62OIY|1|A+2OIY|1|BCrystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.623
73FAR|1|A+3FAR|1|BCation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.423
83C44|1|A+3C44|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION223
93C5D|1|A+3C5D|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycinX-RAY DIFFRACTION1.822
103C7R|1|A+3C7R|1|BCrystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycinX-RAY DIFFRACTION1.722
113C3Z|1|A+3C3Z|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycinX-RAY DIFFRACTION1.522
123DVV|1|A+3DVV|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION222