Equivalence class NR_2.5_64918.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SCE|1|B (rep) | cyclic oligoadenylate | synthetic construct | Synthetic | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-ray diffraction | 1.83 | 2020-02-19 | ||
| 2 | 6SCF|1|I | cyclic oligoadenylate | synthetic construct | Synthetic | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | ||
| 3 | 6SCF|1|K | cyclic oligoadenylate | synthetic construct | Synthetic | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | ||
| 4 | 6SCF|1|M | cyclic oligoadenylate | synthetic construct | Synthetic | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | ||
| 5 | 6SCF|1|L | cyclic oligoadenylate | synthetic construct | Synthetic | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-ray diffraction | 1.55 | 2019-10-30 | ||
| 6 | 6O6X|1|D | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | ||
| 7 | 4BA2|1|R | 5'-R(*AP*AP*AP*AP)-3' | Saccharolobus solfataricus | Archaea | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-ray diffraction | 2.5 | 2012-10-03 | ||
| 8 | 6O6X|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-ray diffraction | 2.11 | 2019-07-31 | ||
| 9 | 6O7B|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 | ||
| 10 | 6O6V|1|C | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | ||
| 11 | 6O6V|1|D | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-ray diffraction | 2.35 | 2019-07-31 | ||
| 12 | 6O7B|1|D | Cyclic RNA cA4 | synthetic construct | Synthetic | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-ray diffraction | 2.4 | 2019-07-31 |
Release history
| Release | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6O6X|1|C | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 2 | 6O6V|1|D | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 3 | 6SCF|1|L | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 4 | 6SCF|1|K | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 5 | 6SCF|1|M | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 6 | 6O7B|1|D | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 7 | 6O6X|1|D | Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization | X-RAY DIFFRACTION | 2.11 | 4 |
| 8 | 6O6V|1|C | Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6 | X-RAY DIFFRACTION | 2.35 | 4 |
| 9 | 6SCE|1|B | Structure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylate | X-RAY DIFFRACTION | 1.83 | 4 |
| 10 | 6SCF|1|I | A viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylate | X-RAY DIFFRACTION | 1.55 | 4 |
| 11 | 6O7B|1|C | Crystal structure of Csm1-Csm4 cassette in complex with cA4 | X-RAY DIFFRACTION | 2.4 | 4 |
| 12 | 4BA2|1|R | Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate | X-RAY DIFFRACTION | 2.5 | 4 |