Equivalence class NR_2.5_65795.66 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4Y4O|1|1a (rep) | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2015-03-18 |
| 2 | 7RQB|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 2022-01-26 |
| 3 | 4Y4O|1|2a | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 2015-03-18 |
| 4 | 7RQB|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 2022-01-26 |
| 5 | 7RQE|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2022-01-26 |
| 6 | 7RQ8|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2021-10-13 |
| 7 | 7RQE|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2022-01-26 |
| 8 | 7RQC|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2022-01-26 |
| 9 | 6XHW|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2020-12-23 |
| 10 | 7RQC|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2022-01-26 |
| 11 | 6XHV|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2020-12-23 |
| 12 | 7RQ8|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2021-10-13 |
| 13 | 7RQD|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2022-01-26 |
| 14 | 6XHV|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2020-12-23 |
| 15 | 6XHW|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2020-12-23 |
| 16 | 7RQD|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 2022-01-26 |
| 17 | 4Y4P|1|1a | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2015-03-18 |
| 18 | 4W2F|1|AA | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2014-10-15 |
| 19 | 7RQA|1|1a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2022-01-26 |
| 20 | 7RQA|1|2a | 16S Ribosomal RNA | Thermus thermophilus HB8 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 2022-01-26 |
| 21 | 4W2F|1|CA | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 2014-10-15 |
| 22 | 4Y4P|1|2a | 16S Ribosomal RNA | Thermus thermophilus | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 2015-03-18 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_65795.66 | NR_2.5_65795.65 | 3.234 | (22) 4W2F|1|AA, 7RQA|1|1a, 7RQA|1|2a, 7RQB|1|1a, 7RQB|1|2a, 7RQC|1|1a, 7RQC|1|2a, 7RQD|1|1a, 7RQD|1|2a, 7RQE|1|1a, 7RQ8|1|2a, 7RQ8|1|1a, 4W2F|1|CA, 4Y4O|1|1a, 4Y4O|1|2a, 4Y4P|1|1a, 4Y4P|1|2a, 6XHV|1|1a, 6XHV|1|2a, 6XHW|1|1a, 6XHW|1|2a, 7RQE|1|2a | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_65795.66 | NR_2.5_65795.67 | 3.239 | (22) 4W2F|1|AA, 7RQA|1|1a, 7RQA|1|2a, 7RQB|1|1a, 7RQB|1|2a, 7RQC|1|1a, 7RQC|1|2a, 7RQD|1|1a, 7RQD|1|2a, 7RQE|1|1a, 7RQ8|1|2a, 7RQ8|1|1a, 4W2F|1|CA, 4Y4O|1|1a, 4Y4O|1|2a, 4Y4P|1|1a, 4Y4P|1|2a, 6XHV|1|1a, 6XHV|1|2a, 6XHW|1|1a, 6XHW|1|2a, 7RQE|1|2a | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7RQA|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1488 |
| 2 | 4Y4O|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 1488 |
| 3 | 7RQB|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 1488 |
| 4 | 7RQE|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1488 |
| 5 | 7RQD|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1488 |
| 6 | 7RQC|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1488 |
| 7 | 6XHW|1|1a | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1488 |
| 8 | 7RQ8|1|1a | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1488 |
| 9 | 4Y4P|1|1a | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 1488 |
| 10 | 4W2F|1|AA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 1497 |
| 11 | 6XHV|1|1a | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1488 |
| 12 | 6XHV|1|2a | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1491 |
| 13 | 4W2F|1|CA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 1503 |
| 14 | 6XHW|1|2a | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1491 |
| 15 | 7RQ8|1|2a | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1491 |
| 16 | 4Y4P|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 1491 |
| 17 | 7RQA|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1492 |
| 18 | 4Y4O|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 1492 |
| 19 | 7RQB|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 1492 |
| 20 | 7RQE|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 1492 |
| 21 | 7RQD|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1492 |
| 22 | 7RQC|1|2a | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 1492 |