Equivalence class NR_2.5_88157.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4CS1|1|A (rep) | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3' | Haloarcula marismortui | Archaea | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-ray diffraction | 2 | 2014-11-19 | ||
| 2 | 6Q8U|1|A+ 6Q8U|1|B | RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3') | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-ray diffraction | 1.99 | 2019-07-03 | ||
| 3 | 4C40|1|A | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3' | Haloarcula marismortui | Archaea | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-ray diffraction | 2.2 | 2013-11-06 | ||
| 4 | 5FJ0|1|C | HMKT-7 | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 2016-09-28 | ||
| 5 | 5FJ0|1|A+ 5FJ0|1|B | HMKT-7 | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 2016-09-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_88157.1 | NR_2.5_67355.2 | 3.224 | (3) 6Q8U|1|A+6Q8U|1|B, 4CS1|1|A, 4C40|1|A | (2) 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C | (0) |
| NR_2.5_88157.1 | NR_2.5_86832.1 | 3.224 | (2) 5FJ0|1|C, 5FJ0|1|A+5FJ0|1|B | (3) 6Q8U|1|A+6Q8U|1|B, 4CS1|1|A, 4C40|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_88157.1 | NR_2.5_88157.2 | 3.226 | (5) 4C40|1|A, 4CS1|1|A, 5FJ0|1|A+5FJ0|1|B, 5FJ0|1|C, 6Q8U|1|A+6Q8U|1|B | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6Q8U|1|A+6Q8U|1|B | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-RAY DIFFRACTION | 1.99 | 20 |
| 2 | 4CS1|1|A | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-RAY DIFFRACTION | 2 | 19 |
| 3 | 4C40|1|A | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-RAY DIFFRACTION | 2.2 | 19 |
| 4 | 5FJ0|1|C | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 19 |
| 5 | 5FJ0|1|A+5FJ0|1|B | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 19 |