BGSU RNA Site //

Equivalence class NR_2.5_90506.59 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17ZW0|1|LA+ 7ZW0|1|LD (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1)Saccharomyces cerevisiae W303EukaryaRF02543 + RF00002FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
28AGX|1|f+ 8AGX|1|i25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaYeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
37TOP|1|A25S+ 7TOP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
48AAF|1|f+ 8AAF|1|i25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaYeast RQC complex in state GElectron microscopy2.52023-03-08
57ZUX|1|5+ 7ZUX|1|325S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaCollided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
67UOO|1|1+ 7UOO|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
77V08|1|1+ 7V08|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
87UQB|1|1+ 7UQB|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
97UQZ|1|1+ 7UQZ|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15

Release history

Release3.274
Date2023-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_90506.59NR_2.5_90506.583.274(5) 8AGX|1|f+8AGX|1|i, 8AAF|1|f+8AAF|1|i, 7ZW0|1|LA+7ZW0|1|LD, 7ZUX|1|5+7ZUX|1|3, 7TOP|1|A25S+7TOP|1|A58S(4) 7V08|1|1+7V08|1|2, 7UQZ|1|1+7UQZ|1|2, 7UQB|1|1+7UQB|1|2, 7UOO|1|1+7UOO|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_90506.59NR_2.5_90506.603.275(9) 7TOP|1|A25S+7TOP|1|A58S, 7UOO|1|1+7UOO|1|2, 7UQB|1|1+7UQB|1|2, 7UQZ|1|1+7UQZ|1|2, 7V08|1|1+7V08|1|2, 7ZUX|1|5+7ZUX|1|3, 7ZW0|1|LA+7ZW0|1|LD, 8AAF|1|f+8AAF|1|i, 8AGX|1|f+8AGX|1|i(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17UOO|1|1+7UOO|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.342935
27UQZ|1|1+7UQZ|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.442933
37V08|1|1+7V08|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.362933
47UQB|1|1+7UQB|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.432936
57TOP|1|A25S+7TOP|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.43194
67ZW0|1|LA+7ZW0|1|LDFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.43217
77ZUX|1|5+7ZUX|1|3Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.53163
88AAF|1|f+8AAF|1|iYeast RQC complex in state GELECTRON MICROSCOPY2.53217
98AGX|1|f+8AGX|1|iYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.43216
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