#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18CCS|1|AA+ 8CCS|1|CC (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF0000280S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.972023-09-20
28CDR|1|AA+ 8CDR|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.042023-09-20
38CEH|1|AA+ 8CEH|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.052023-09-20
48EVT|1|A1+ 8EVT|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.22023-09-06
58CGN|1|AA+ 8CGN|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.282023-09-20
67ZW0|1|LA+ 7ZW0|1|LDLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1)Saccharomyces cerevisiae W303EukaryaRF02543 + RF00002FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
78AGX|1|f+ 8AGX|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
87TOP|1|A25S+ 7TOP|1|A58SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
98EVP|1|A1+ 8EVP|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.382023-09-06
108BN3|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.42024-01-10
118AAF|1|f+ 8AAF|1|iLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast RQC complex in state GElectron microscopy2.52023-03-08
128EWC|1|A1+ 8EWC|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8 S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.452023-09-06
138CIV|1|AA+ 8CIV|1|CCLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.472023-09-20
147ZUX|1|5+ 7ZUX|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
157UOO|1|1+ 7UOO|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
167V08|1|1+ 7V08|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
177UQB|1|1+ 7UQB|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
187UQZ|1|1+ 7UQZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiae BY4741EukaryaRF02543 + RF00002Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15

Release history

Release3.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.331
Date2024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-17

Parents

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18CGN|1|AA+8CGN|1|CCNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.283155
28CIV|1|AA+8CIV|1|CCTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.473155
38CEH|1|AA+8CEH|1|CCTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.053155
48CDR|1|AA+8CDR|1|CCTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.043155
58CCS|1|AA+8CCS|1|CC80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.973148
67TOP|1|A25S+7TOP|1|A58SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.43194
78AGX|1|f+8AGX|1|iYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.43216
88AAF|1|f+8AAF|1|iYeast RQC complex in state GELECTRON MICROSCOPY2.53217
97ZUX|1|5+7ZUX|1|3Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.53163
107ZW0|1|LA+7ZW0|1|LDFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.43217
118BN3|1|1Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.43143
128EVT|1|A1+8EVT|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.23176
138EVP|1|A1+8EVP|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.383156
148EWC|1|A1+8EWC|1|A4Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.453156
157UQB|1|1+7UQB|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.432936
167V08|1|1+7V08|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.362933
177UQZ|1|1+7UQZ|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.442933
187UOO|1|1+7UOO|1|2Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.342935
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