Equivalence class NR_20.0_05217.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HOY|1|P (rep) | 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3' | Complete RNA polymerase II elongation complex VI | X-ray diffraction | 3.4 | 2009-07-28 | ||||
| 2 | 5FLM|1|P | RNA, DNA-RNA ELONGATION SCAFFOLD | synthetic construct | Synthetic | Structure of transcribing mammalian RNA polymerase II | Electron microscopy | 3.4 | 2016-01-20 | ||
| 3 | 6EXV|1|P | RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') | synthetic construct | Synthetic | Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin | Electron microscopy | 3.6 | 2018-03-21 | ||
| 4 | 6HLR|1|R | RNA | Saccharomyces cerevisiae | Eukarya | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) | Electron microscopy | 3.18 | 2019-04-03 | ||
| 5 | 6HLQ|1|R | RNA | Saccharomyces cerevisiae | Eukarya | Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP | Electron microscopy | 3.18 | 2019-04-03 | ||
| 6 | 5M5X|1|R | RNA | Saccharomyces cerevisiae | Eukarya | RNA Polymerase I elongation complex 1 | Electron microscopy | 4 | 2016-12-21 | ||
| 7 | 6HKO|1|R | RNA | Saccharomyces cerevisiae | Eukarya | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP | Electron microscopy | 3.42 | 2019-04-03 | ||
| 8 | 5M3F|1|R | RNA | Saccharomyces cerevisiae | Eukarya | Yeast RNA polymerase I elongation complex at 3.8A | Electron microscopy | 3.8 | 2016-11-23 |
Release history
| Release | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 |
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| Date | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_05217.2 | NR_20.0_05217.1 | 3.75 | (7) 6HLR|1|R, 6HLQ|1|R, 6HKO|1|R, 6EXV|1|P, 5M5X|1|R, 5M3F|1|R, 5FLM|1|P | (1) 3HOY|1|P | (0) |
| NR_20.0_05217.2 | NR_20.0_40852.1 | 3.75 | (1) 3HOY|1|P | (7) 6HLR|1|R, 6HLQ|1|R, 6HKO|1|R, 6EXV|1|P, 5M5X|1|R, 5M3F|1|R, 5FLM|1|P | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3HOY|1|P | Complete RNA polymerase II elongation complex VI | X-RAY DIFFRACTION | 3.4 | 10 |
| 2 | 6HLQ|1|R | Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP | ELECTRON MICROSCOPY | 3.18 | 9 |
| 3 | 6HLR|1|R | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) | ELECTRON MICROSCOPY | 3.18 | 9 |
| 4 | 6HKO|1|R | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP | ELECTRON MICROSCOPY | 3.42 | 9 |
| 5 | 6EXV|1|P | Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin | ELECTRON MICROSCOPY | 3.6 | 14 |
| 6 | 5FLM|1|P | Structure of transcribing mammalian RNA polymerase II | ELECTRON MICROSCOPY | 3.4 | 14 |
| 7 | 5M3F|1|R | Yeast RNA polymerase I elongation complex at 3.8A | ELECTRON MICROSCOPY | 3.8 | 8 |
| 8 | 5M5X|1|R | RNA Polymerase I elongation complex 1 | ELECTRON MICROSCOPY | 4 | 13 |