#IFECompound(s)RNA source organismTitleMethodResolutionDate
16SGC|1|54+ 6SGC|1|84 (rep)28S ribosomal RNA, 5.8S ribosomal RNARabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
26R5Q|1|5+ 6R5Q|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
36P5I|1|5+ 6P5I|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
46R6P|1|5+ 6R6P|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
56P5J|1|5+ 6P5J|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
66P5K|1|5+ 6P5K|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
76ZVK|1|e2+ 6ZVK|1|h228S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAThe Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.492020-12-23
86P5N|1|5+ 6P5N|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
96D9J|1|5+ 6D9J|1|828S rRNA, 5.8S rRNAMammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
106T59|1|54+ 6T59|1|8428S ribosomal RNA, 5.8S ribosomal RNAStructure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.112019-11-27
115LZS|1|5+ 5LZS|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
125LZV|1|5+ 5LZV|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
136MTD|1|5+ 6MTD|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
146D90|1|5+ 6D90|1|828S rRNA, 5.8S rRNAMammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
156MTE|1|5+ 6MTE|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
166MTC|1|5+ 6MTC|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
176GZ5|1|A2+ 6GZ5|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
185LZZ|1|5+ 5LZZ|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
195LZW|1|5+ 5LZW|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
206GZ3|1|A2+ 6GZ3|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
215LZX|1|5+ 5LZX|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
226GZ4|1|A2+ 6GZ4|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.62018-12-05
235LZT|1|5+ 5LZT|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
246MTB|1|5+ 6MTB|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.62018-11-21
256R6G|1|5+ 6R6G|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.72019-07-10
266HCJ|1|51+ 6HCJ|1|8128S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.82018-10-17
275LZU|1|5+ 5LZU|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
286FRK|1|5+ 6FRK|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.72018-03-28
296R7Q|1|5+ 6R7Q|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.92019-07-10
306HCF|1|52+ 6HCF|1|8228S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.92018-10-17
315LZY|1|5+ 5LZY|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.992016-11-30
323JAH|1|5+ 3JAH|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
336FTI|1|u+ 6FTI|1|w28S rRNA, 5.8S ribosomal RNACryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeELECTRON MICROSCOPY4.22018-03-21
343JAG|1|5+ 3JAG|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
353JAI|1|5+ 3JAI|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
363J92|1|5+ 3J92|1|828S rRNA, 5.8S rRNAStructure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.62015-01-21
376FTJ|1|u+ 6FTJ|1|w28S rRNA, 5.8S ribosomal RNACryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S RibosomeELECTRON MICROSCOPY4.72018-03-21
386HCQ|1|51+ 6HCQ|1|8128S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.52018-10-17
396HCM|1|52+ 6HCM|1|8228S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit collided di-ribosome (stalled monosome)ELECTRON MICROSCOPY6.82018-10-17
404UJE|1|A2+ 4UJE|1|A328S Ribosomal RNA, 5.8S Ribosomal RNARegulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.92014-07-16
416FTG|1|u+ 6FTG|1|w28S ribosomal RNA, 5.8S ribosomal RNASubtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranesELECTRON MICROSCOPY9.12018-03-21
423JAN|1|5+ 3JAN|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
433JAJ|1|5+ 3JAJ|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
444UJD|1|A2+ 4UJD|1|A328S Ribosomal RNA, 5.8S Ribosomal RNAmammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.92014-07-30
454D67|1|2+ 4D67|1|328S RRNA, 5.8S RRNACryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-03-04
464D5Y|1|2+ 4D5Y|1|328S Ribosomal RNA, 5.8S Ribosomal RNACryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated stateELECTRON MICROSCOPY92015-03-04
474UJC|1|A2+ 4UJC|1|A328S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNAmammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.52014-07-30

Release history

Release3.158
Date2020-12-23

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#Class_IFEPDBIDAssemblyLSU_23SLSU_5SmRNAtRNA/stRNA_OccupancyA_tRNA_anticodonProtein_factors