Equivalence class NR_20.0_06650.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J71|1|5+ 3J71|1|8 (rep) | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 2 | 3J72|1|5+ 3J72|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 3 | 5LZS|1|5+ 5LZS|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 4 | 3J74|1|5+ 3J74|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 5 | 5LZV|1|5+ 5LZV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 6 | 5LZZ|1|5+ 5LZZ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 7 | 5LZW|1|5+ 5LZW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 2016-11-30 |
| 8 | 5LZX|1|5+ 5LZX|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 2016-11-30 |
| 9 | 5LZT|1|5+ 5LZT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 2016-11-30 |
| 10 | 3J73|1|5+ 3J73|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex | Electron microscopy | 3.9 | 2014-06-18 | ||||
| 11 | 5LZU|1|5+ 5LZU|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 2016-11-30 |
| 12 | 6FRK|1|5+ 6FRK|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron microscopy | 3.7 | 2018-03-28 |
| 13 | 5LZY|1|5+ 5LZY|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 2016-11-30 |
| 14 | 3JAH|1|5+ 3JAH|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
| 15 | 6FTI|1|u+ 6FTI|1|w | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | Electron microscopy | 4.2 | 2018-03-21 |
| 16 | 3JAG|1|5+ 3JAG|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 17 | 3JAI|1|5+ 3JAI|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 18 | 3J92|1|5+ 3J92|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure and assembly pathway of the ribosome quality control complex | Electron microscopy | 3.6 | 2015-01-21 |
| 19 | 6FTJ|1|u+ 6FTJ|1|w | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | Electron microscopy | 4.7 | 2018-03-21 |
| 20 | 1VWW|1|5+ 1VWW|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 21 | 1VWY|1|5+ 1VWY|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 22 | 1VX3|1|5+ 1VX3|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 23 | 1VX0|1|5+ 1VX0|1|8 | 28S ribosomal RNA, 5.8S ribosomal RNA | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.9 | 2014-06-18 | ||||
| 24 | 4UJE|1|A2+ 4UJE|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 25 | 6FTG|1|u+ 6FTG|1|w | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | Electron microscopy | 9.1 | 2018-03-21 |
| 26 | 3JAN|1|5+ 3JAN|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 27 | 3JAJ|1|5+ 3JAJ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 28 | 4UJD|1|A2+ 4UJD|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 29 | 4D67|1|2+ 4D67|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RRNA, 5.8S RRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 30 | 4D5Y|1|2+ 4D5Y|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 31 | 4UJC|1|A2+ 4UJC|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_06650.4 | NR_20.0_06650.3 | 3.15 | (30) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX0|1|5+1VX0|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J73|1|5+3J73|1|8, 3J74|1|5+3J74|1|8, 3J92|1|5+3J92|1|8, 3JAG|1|5+3JAG|1|8, 3JAH|1|5+3JAH|1|8, 3JAI|1|5+3JAI|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8, 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJE|1|A2+4UJE|1|A3, 5LZS|1|5+5LZS|1|8, 5LZT|1|5+5LZT|1|8, 5LZU|1|5+5LZU|1|8, 5LZV|1|5+5LZV|1|8, 5LZW|1|5+5LZW|1|8, 5LZX|1|5+5LZX|1|8, 5LZY|1|5+5LZY|1|8, 5LZZ|1|5+5LZZ|1|8, 6FTG|1|u+6FTG|1|w, 6FTI|1|u+6FTI|1|w, 6FTJ|1|u+6FTJ|1|w | (1) 6FRK|1|5+6FRK|1|8 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_06650.4 | NR_20.0_06650.5 | 3.25 | (31) 1VWW|1|5+1VWW|1|8, 1VWY|1|5+1VWY|1|8, 1VX0|1|5+1VX0|1|8, 1VX3|1|5+1VX3|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 3J73|1|5+3J73|1|8, 3J74|1|5+3J74|1|8, 3J92|1|5+3J92|1|8, 3JAG|1|5+3JAG|1|8, 3JAH|1|5+3JAH|1|8, 3JAI|1|5+3JAI|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAN|1|5+3JAN|1|8, 4D5Y|1|2+4D5Y|1|3, 4D67|1|2+4D67|1|3, 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJE|1|A2+4UJE|1|A3, 5LZS|1|5+5LZS|1|8, 5LZT|1|5+5LZT|1|8, 5LZU|1|5+5LZU|1|8, 5LZV|1|5+5LZV|1|8, 5LZW|1|5+5LZW|1|8, 5LZX|1|5+5LZX|1|8, 5LZY|1|5+5LZY|1|8, 5LZZ|1|5+5LZZ|1|8, 6FRK|1|5+6FRK|1|8, 6FTG|1|u+6FTG|1|w, 6FTI|1|u+6FTI|1|w, 6FTJ|1|u+6FTJ|1|w | (0) | (2) 6D90|1|5+6D90|1|8, 6D9J|1|5+6D9J|1|8 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1VX0|1|5+1VX0|1|8 | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.9 | 3720 |
| 2 | 3J73|1|5+3J73|1|8 | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 3720 |
| 3 | 3J72|1|5+3J72|1|8 | Structure of the idle mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 4 | 1VWY|1|5+1VWY|1|8 | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 5 | 3J71|1|5+3J71|1|8 | Structure of the mammalian 60S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 6 | 1VWW|1|5+1VWW|1|8 | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 3662 |
| 7 | 1VX3|1|5+1VX3|1|8 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.5 | 3662 |
| 8 | 3J74|1|5+3J74|1|8 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 3662 |
| 9 | 3J92|1|5+3J92|1|8 | Structure and assembly pathway of the ribosome quality control complex | ELECTRON MICROSCOPY | 3.6 | 3662 |
| 10 | 3JAN|1|5+3JAN|1|8 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 3658 |
| 11 | 3JAJ|1|5+3JAJ|1|8 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 3658 |
| 12 | 6FRK|1|5+6FRK|1|8 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 3658 |
| 13 | 3JAI|1|5+3JAI|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 3662 |
| 14 | 3JAG|1|5+3JAG|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 3662 |
| 15 | 3JAH|1|5+3JAH|1|8 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 3662 |
| 16 | 6FTI|1|u+6FTI|1|w | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.2 | 3662 |
| 17 | 6FTG|1|u+6FTG|1|w | Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes | ELECTRON MICROSCOPY | 9.1 | 3662 |
| 18 | 6FTJ|1|u+6FTJ|1|w | Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome | ELECTRON MICROSCOPY | 4.7 | 3662 |
| 19 | 5LZV|1|5+5LZV|1|8 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 3543 |
| 20 | 5LZU|1|5+5LZU|1|8 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 3543 |
| 21 | 5LZS|1|5+5LZS|1|8 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 3543 |
| 22 | 5LZT|1|5+5LZT|1|8 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 3543 |
| 23 | 5LZW|1|5+5LZW|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 3543 |
| 24 | 5LZX|1|5+5LZX|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 3543 |
| 25 | 5LZZ|1|5+5LZZ|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 3543 |
| 26 | 5LZY|1|5+5LZY|1|8 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 3543 |
| 27 | 4UJC|1|A2+4UJC|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 3616 |
| 28 | 4UJE|1|A2+4UJE|1|A3 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 3616 |
| 29 | 4UJD|1|A2+4UJD|1|A3 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 3616 |
| 30 | 4D67|1|2+4D67|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |
| 31 | 4D5Y|1|2+4D5Y|1|3 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 3616 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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