#PDBTitleRNA source organismCompoundsMethodResolutionDate
13B5F|B (rep)Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteLoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.72008-08-12
23B58|BMinimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteLoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.652008-08-12
33B5A|BCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteLoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.352008-08-12
43B5S|BMinimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteLoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.252008-08-12
53B91|BMinimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteLoop A Substrate strand, 29-mer Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.752008-08-12
63BBI|BMinimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteLoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.352008-08-12
73BBK|BMiminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteLoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.752008-08-12
83BBM|BMinimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteLoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B S-turn strandX-RAY DIFFRACTION2.652008-08-12
93CQS|CA 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleases13-mer substrate strand with 3'-OH, 2',5'-phosphodiester covalently linking 5th and 6th nucleotides, 29-mer ribozyme strand with S9L synthetic linker at 13th position, 19-mer ribozyme strandX-RAY DIFFRACTION2.82008-05-20
103CR1|Ccrystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2RNA (5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3'), loop A and B ribozyme strand, RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*CP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3')X-RAY DIFFRACTION2.252008-08-26
113I2Q|CCrystal structure of the hairpin ribozyme with 2'OMe substrate strand and N1-deazaadenosine at position A95'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*GP*U)-3', DNA/RNA (30-MER), 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'X-RAY DIFFRACTION2.92009-11-03
123I2R|CCrystal structure of the hairpin ribozyme with a 2',5'-linked substrate with N1-deazaadenosine at position A95'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3', DNA/RNA (30-MER), 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'X-RAY DIFFRACTION2.82009-11-03
133I2S|CCrystal structure of the hairpin ribozyme with a 2'OMe substrate and N1-deazaadenosine at position A105'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*GP*U)-3', DNA/RNA (30-MER), 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'X-RAY DIFFRACTION2.752009-11-03
143I2U|CCrystal structure of the haiprin ribozyme with a 2',5'-linked substrate and N1-deazaadenosine at position A105'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3', DNA/RNA (30-MER), 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'X-RAY DIFFRACTION2.82009-11-03
154G6P|BMinimal Hairpin Ribozyme in the Precatalytic State with A38P VariationLoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandX-RAY DIFFRACTION2.642012-08-15
164G6S|BMinimal Hairpin Ribozyme in the Transition State with A38P VariationLoop A Substrate strand, Loop A and Loop B Ribozyme strand, Loop B of the Ribozyme StrandX-RAY DIFFRACTION2.842012-08-08

Release history

Release0.830.840.850.860.870.880.890.900.910.920.930.940.950.960.970.980.990.1000.1010.1020.1030.1040.1050.1060.1070.1080.1090.1101.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.161.171.181.191.201.211.221.231.241.251.261.271.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.761.771.781.791.801.811.821.831.841.851.861.871.881.89
Date2012-08-182012-08-252012-09-012012-09-082012-09-152012-09-222012-09-292012-10-062012-10-132012-10-202012-10-272012-11-032012-11-102012-11-172012-11-242012-12-012012-12-082012-12-152012-12-222012-12-292013-01-052013-01-122013-01-192013-01-262013-02-022013-02-092013-02-162013-02-232013-03-022013-03-092013-03-162013-03-232013-03-302013-04-062013-04-132013-04-202013-04-272013-05-042013-05-112013-05-182013-05-252013-06-012013-06-082013-06-152013-06-222013-06-292013-07-062013-07-132013-07-202013-07-272013-08-032013-08-102013-08-172013-08-242013-08-312013-09-072013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-052014-09-122014-09-192014-09-262014-10-032014-10-102014-10-172014-10-242014-10-312014-11-072014-11-142014-11-212014-11-282014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13I2U|CCrystal structure of the haiprin ribozyme with a 2',5'-linked substrate and N1-deazaadenosine at position A10X-RAY DIFFRACTION2.819
23I2R|CCrystal structure of the hairpin ribozyme with a 2',5'-linked substrate with N1-deazaadenosine at position A9X-RAY DIFFRACTION2.819
33B58|BMinimally Junctioned Hairpin Ribozyme Incorporates A38G Mutation and a 2',5'-Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.6530
43B91|BMinimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active SiteX-RAY DIFFRACTION2.7530
54G6S|BMinimal Hairpin Ribozyme in the Transition State with A38P VariationX-RAY DIFFRACTION2.8430
63CR1|Ccrystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2X-RAY DIFFRACTION2.2519
73B5S|BMinimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active SiteX-RAY DIFFRACTION2.2530
83BBI|BMinimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active SiteX-RAY DIFFRACTION2.3530
93B5A|BCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating A38G mutation with a 2'OMe modification at the active siteX-RAY DIFFRACTION2.3530
104G6P|BMinimal Hairpin Ribozyme in the Precatalytic State with A38P VariationX-RAY DIFFRACTION2.6430
113BBM|BMinimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active SiteX-RAY DIFFRACTION2.6530
123I2Q|CCrystal structure of the hairpin ribozyme with 2'OMe substrate strand and N1-deazaadenosine at position A9X-RAY DIFFRACTION2.919
133I2S|CCrystal structure of the hairpin ribozyme with a 2'OMe substrate and N1-deazaadenosine at position A10X-RAY DIFFRACTION2.7519
143BBK|BMiminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active SiteX-RAY DIFFRACTION2.7530
153B5F|BCrystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active SiteX-RAY DIFFRACTION2.730
163CQS|CA 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleasesX-RAY DIFFRACTION2.819