#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V9B|1|AC (rep)TRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
24V5M|1|AVTRNA, MRNAThermus thermophilustRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.82014-07-09
34V95|1|AVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
44V8X|1|CVtransfer RNA, BACTERIAL TOXIN YOEBThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
54V9A|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
64V5N|1|AVTRNA, MRNAThermus thermophilustRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.62014-07-09
74V9N|1|AWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
84V9N|1|CWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
94V8X|1|AVtransfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'Thermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
104V7J|1|AvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
114V7J|1|BvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
124V9B|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
134V95|1|CVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
144V7K|1|BvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
154V9A|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
164L47|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
174L47|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
184V68|1|AVP-SITE TRNA, SYNTHETIC MRNAThermus thermophilusT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
194V7K|1|AvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
204V8U|1|AWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
214V8U|1|CWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
224V4J|1|zP-site tRNAfMET, MRNAThermus thermophilusInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.832014-07-09
234V9B|1|ADTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
244V7K|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
254V8X|1|CWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
264V5A|1|AWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
274V7K|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
284V8X|1|AWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
294V7J|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
304V7J|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
314V5A|1|CWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
324V9B|1|CDTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09

Release history

Release2.02.12.22.32.42.52.6
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9B|1|ACCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
24V9A|1|ACCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
34V9B|1|CCCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
44V9A|1|CCCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
54V95|1|CVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
64V9N|1|AWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
74V9N|1|CWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
84V7K|1|BvStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.676
94V7K|1|AvStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.676
104V7J|1|AvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
114V7J|1|BvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
124V95|1|AVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
134L47|1|XVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
144L47|1|QVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
154V68|1|AVT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.476
164V4J|1|zInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.8377
174V8X|1|AVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3576
184V8X|1|CVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
194V5N|1|AVtRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.677
204V8U|1|CWCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
214V8U|1|AWCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
224V5A|1|AWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
234V5A|1|CWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
244V8X|1|AWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
254V7J|1|AwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
264V8X|1|CWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
274V7K|1|AwStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.677
284V7J|1|BwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
294V7K|1|BwStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.677
304V9B|1|CDCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
314V9B|1|ADCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
324V5M|1|AVtRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.877