Equivalence class NR_20.0_20721.8 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 5E81|1|2K (rep) | tRNA-fMet, mRNA | Thermus thermophilus | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2016-01-27 |
2 | 5J8B|1|x | P-site tRNA, mRNA | Thermus thermophilus | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 2016-05-25 |
3 | 4V95|1|AV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
4 | 4V7J|1|Av | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
5 | 4V9B|1|AC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
6 | 4V7J|1|Bv | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
7 | 5E81|1|2L | tRNA-fMet, mRNA | Thermus thermophilus | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 2016-01-27 |
8 | 4V9B|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
9 | 4V95|1|CV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
10 | 4V7K|1|Bv | RNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
11 | 4V7K|1|Av | RNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
12 | 4WT8|1|C4 | P site trNA, mRNA | Thermus thermophilus | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 2015-01-21 |
13 | 4V9A|1|AC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
14 | 4L47|1|XV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
15 | 4V7K|1|Bw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
16 | 4L47|1|QV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
17 | 4V7K|1|Aw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
18 | 4V9A|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
19 | 4V7J|1|Aw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
20 | 4V7J|1|Bw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
21 | 4V9B|1|CD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
22 | 4V4J|1|z | P-site tRNAfMET, MRNA | Thermus thermophilus | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-RAY DIFFRACTION | 3.83 | 2014-07-09 |
23 | 4V9B|1|AD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
24 | 4V5A|1|AW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
25 | 4V5A|1|CW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
26 | 4V8X|1|AV | transfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
27 | 4V9N|1|CW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
28 | 4V8X|1|CV | transfer RNA, BACTERIAL TOXIN YOEB | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
29 | 4V9N|1|AW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
30 | 4V8U|1|CW | RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
31 | 4V8U|1|AW | RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
32 | 4V8X|1|CW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
33 | 4V8X|1|AW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
34 | 6BOK|1|IA | 16S ribosomal RNA, mRNA | Thermus thermophilus | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 2018-05-23 |
35 | 6BOK|1|LC | 16S ribosomal RNA, mRNA | Thermus thermophilus | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 2018-05-23 |
36 | 6BOK|1|D | 16S ribosomal RNA | Thermus thermophilus | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 2018-05-23 |
37 | 6BOK|1|GB | 16S ribosomal RNA | Thermus thermophilus | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 2018-05-23 |
38 | 3J9Z|1|S6 | P-tRNA | Thermus thermophilus | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 2015-07-01 |
39 | 5ZLU|1|DD | P-site tRNA, RNA (25-mer) | Thermus thermophilus | Ribosome Structure bound to ABC-F protein. | ELECTRON MICROSCOPY | 3.6 | 2018-08-01 |
40 | 3JA1|1|S2 | P/E-tRNA, mRNA | Thermus thermophilus | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 2015-07-01 |
41 | 5LMT|1|Z | tRNAi, mRNA | Thermus thermophilus | Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3) | ELECTRON MICROSCOPY | 4.15 | 2016-10-05 |
42 | 5LMR|1|Z | tRNAi, mRNA | Thermus thermophilus | Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B) | ELECTRON MICROSCOPY | 4.45 | 2016-10-05 |
43 | 4V68|1|AV | P-SITE TRNA, SYNTHETIC MRNA | Thermus thermophilus | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 2014-07-09 |
44 | 4V5N|1|AV | TRNA, MRNA | Thermus thermophilus | tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST) | ELECTRON MICROSCOPY | 7.6 | 2014-07-09 |
45 | 4V5M|1|AV | TRNA, MRNA | Thermus thermophilus | tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE) | ELECTRON MICROSCOPY | 7.8 | 2014-07-09 |
Release history
Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
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Date | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_20.0_20721.8 | NR_20.0_20721.7 | 3.33 | (44) 4V4J|1|z, 5E81|1|2L, 4L47|1|XV, 5E81|1|2K, 4L47|1|QV, 4WT8|1|C4, 3JA1|1|S2, 4V9N|1|CW, 3J9Z|1|S6, 4V9N|1|AW, 4V9B|1|CD, 4V9B|1|CC, 4V9B|1|AD, 4V9B|1|AC, 4V9A|1|CC, 4V9A|1|AC, 4V95|1|CV, 4V95|1|AV, 4V8X|1|CW, 4V8X|1|CV, 4V8X|1|AW, 4V8X|1|AV, 4V8U|1|CW, 4V8U|1|AW, 4V7K|1|Bw, 4V7K|1|Bv, 4V7K|1|Aw, 4V7K|1|Av, 4V7J|1|Bw, 4V7J|1|Bv, 4V7J|1|Aw, 6BOK|1|LC, 4V7J|1|Av, 6BOK|1|IA, 4V68|1|AV, 6BOK|1|GB, 4V5N|1|AV, 6BOK|1|D, 4V5M|1|AV, 5LMT|1|Z, 4V5A|1|CW, 5LMR|1|Z, 4V5A|1|AW, 5J8B|1|x | (1) 5ZLU|1|DD | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 5ZLU|1|DD | Ribosome Structure bound to ABC-F protein. | ELECTRON MICROSCOPY | 3.6 | 72 |
2 | 3J9Z|1|S6 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 77 |
3 | 4V8X|1|CV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
4 | 4V8X|1|AV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 76 |
5 | 4V4J|1|z | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-RAY DIFFRACTION | 3.83 | 77 |
6 | 4V68|1|AV | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 76 |
7 | 4L47|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 |
8 | 4L47|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 |
9 | 4V95|1|AV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 |
10 | 4V7J|1|Av | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 |
11 | 4V7K|1|Av | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 76 |
12 | 4V7K|1|Bv | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 76 |
13 | 4V7J|1|Bv | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 |
14 | 4V9N|1|CW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 |
15 | 4V9N|1|AW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 |
16 | 4V95|1|CV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 |
17 | 4WT8|1|C4 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 77 |
18 | 4V9A|1|CC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 |
19 | 4V9B|1|CC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
20 | 4V9A|1|AC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 |
21 | 4V9B|1|AC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
22 | 5E81|1|2K | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 |
23 | 5J8B|1|x | Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.6 | 73 |
24 | 6BOK|1|IA | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 73 |
25 | 6BOK|1|LC | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 73 |
26 | 5E81|1|2L | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair | X-RAY DIFFRACTION | 2.95 | 72 |
27 | 5LMR|1|Z | Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B) | ELECTRON MICROSCOPY | 4.45 | 72 |
28 | 5LMT|1|Z | Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3) | ELECTRON MICROSCOPY | 4.15 | 72 |
29 | 4V5N|1|AV | tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST) | ELECTRON MICROSCOPY | 7.6 | 77 |
30 | 4V8U|1|CW | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
31 | 4V8U|1|AW | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
32 | 4V5A|1|AW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 |
33 | 4V5A|1|CW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 |
34 | 4V7K|1|Bw | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 77 |
35 | 4V7J|1|Bw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 |
36 | 4V8X|1|CW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
37 | 4V7J|1|Aw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 |
38 | 4V8X|1|AW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
39 | 4V7K|1|Aw | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 77 |
40 | 6BOK|1|D | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 73 |
41 | 6BOK|1|GB | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | X-RAY DIFFRACTION | 3.55 | 73 |
42 | 4V9B|1|AD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
43 | 4V9B|1|CD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
44 | 4V5M|1|AV | tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE) | ELECTRON MICROSCOPY | 7.8 | 77 |
45 | 3JA1|1|S2 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 77 |