BGSU RNA Site //

Equivalence class NR_20.0_20721.8 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
15E81|1|2K (rep)tRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
25J8B|1|xP-site tRNA, mRNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.62016-05-25
34V95|1|AVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
44V7J|1|AvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
54V9B|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
64V7J|1|BvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
75E81|1|2LtRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
84V9B|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
94V95|1|CVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
104V7K|1|BvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
114V7K|1|AvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
124WT8|1|C4P site trNA, mRNAThermus thermophilusCrystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
134V9A|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
144L47|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
154V7K|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
164L47|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
174V7K|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
184V9A|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
194V7J|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
204V7J|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
214V9B|1|CDTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
224V4J|1|zP-site tRNAfMET, MRNAThermus thermophilusInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.832014-07-09
234V9B|1|ADTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
244V5A|1|AWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
254V5A|1|CWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
264V8X|1|AVtransfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'Thermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
274V9N|1|CWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
284V8X|1|CVtransfer RNA, BACTERIAL TOXIN YOEBThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
294V9N|1|AWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
304V8U|1|CWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
314V8U|1|AWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
324V8X|1|CWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
334V8X|1|AWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
346BOK|1|IA16S ribosomal RNA, mRNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
356BOK|1|LC16S ribosomal RNA, mRNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
366BOK|1|D16S ribosomal RNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
376BOK|1|GB16S ribosomal RNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
383J9Z|1|S6P-tRNAThermus thermophilusActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
395ZLU|1|DDP-site tRNA, RNA (25-mer)Thermus thermophilusRibosome Structure bound to ABC-F protein.ELECTRON MICROSCOPY3.62018-08-01
403JA1|1|S2P/E-tRNA, mRNAThermus thermophilusActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
415LMT|1|ZtRNAi, mRNAThermus thermophilusStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)ELECTRON MICROSCOPY4.152016-10-05
425LMR|1|ZtRNAi, mRNAThermus thermophilusStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)ELECTRON MICROSCOPY4.452016-10-05
434V68|1|AVP-SITE TRNA, SYNTHETIC MRNAThermus thermophilusT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
444V5N|1|AVTRNA, MRNAThermus thermophilustRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.62014-07-09
454V5M|1|AVTRNA, MRNAThermus thermophilustRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.82014-07-09

Release history

Release3.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_20721.8NR_20.0_20721.73.33(44) 4V9B|1|AC, 4V9A|1|CC, 4V9A|1|AC, 4V95|1|CV, 4V95|1|AV, 4V8X|1|CW, 4V8X|1|CV, 4V8X|1|AW, 4V8X|1|AV, 4V8U|1|CW, 4V8U|1|AW, 4V7K|1|Bw, 4V7K|1|Bv, 4V7K|1|Aw, 4V7K|1|Av, 4V7J|1|Bw, 4V7J|1|Bv, 6BOK|1|LC, 4V7J|1|Aw, 6BOK|1|IA, 4V7J|1|Av, 6BOK|1|GB, 4V68|1|AV, 6BOK|1|D, 4V5N|1|AV, 5LMT|1|Z, 4V5M|1|AV, 5LMR|1|Z, 4V5A|1|CW, 5J8B|1|x, 4V5A|1|AW, 5E81|1|2L, 4V4J|1|z, 5E81|1|2K, 4L47|1|XV, 4WT8|1|C4, 4L47|1|QV, 4V9N|1|CW, 3JA1|1|S2, 4V9N|1|AW, 3J9Z|1|S6, 4V9B|1|CD, 4V9B|1|CC, 4V9B|1|AD(1) 5ZLU|1|DD(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_20721.8NR_20.0_20721.93.99(44) 5J8B|1|x, 4V5A|1|AW, 4V8X|1|AW, 4V9B|1|CC, 4V7K|1|Av, 5LMT|1|Z, 4V5M|1|AV, 4V8X|1|CW, 4V9N|1|AW, 3J9Z|1|S6, 4V7K|1|Bv, 4V95|1|CV, 6BOK|1|GB, 4V68|1|AV, 4WT8|1|C4, 4L47|1|QV, 4V8U|1|AW, 4V9A|1|CC, 6BOK|1|LC, 4V7J|1|Aw, 5E81|1|2L, 4V4J|1|z, 4V8X|1|AV, 4V9B|1|AD, 4V7J|1|Bw, 5LMR|1|Z, 4V5A|1|CW, 4V8X|1|CV, 4V9B|1|CD, 4V7K|1|Aw, 4V95|1|AV, 6BOK|1|D, 4V5N|1|AV, 4V9N|1|CW, 3JA1|1|S2, 4V7K|1|Bw, 4V9A|1|AC, 6BOK|1|IA, 4V7J|1|Av, 5E81|1|2K, 4L47|1|XV, 4V8U|1|CW, 4V9B|1|AC, 4V7J|1|Bv(1) 5ZLU|1|DD(0)
NR_20.0_20721.8NR_20.0_29074.13.99(1) 5ZLU|1|DD(44) 4V68|1|AV, 4V95|1|CV, 6BOK|1|GB, 4L47|1|QV, 4V8U|1|AW, 4WT8|1|C4, 4V7J|1|Aw, 4V9A|1|CC, 6BOK|1|LC, 4V4J|1|z, 4V8X|1|AV, 5E81|1|2L, 4V7J|1|Bw, 4V9B|1|AD, 4V5A|1|CW, 4V8X|1|CV, 5LMR|1|Z, 4V7K|1|Aw, 4V9B|1|CD, 4V5N|1|AV, 4V95|1|AV, 6BOK|1|D, 3JA1|1|S2, 4V7K|1|Bw, 4V9N|1|CW, 4V7J|1|Av, 4V9A|1|AC, 6BOK|1|IA, 4L47|1|XV, 4V8U|1|CW, 5E81|1|2K, 4V7J|1|Bv, 4V9B|1|AC, 4V5A|1|AW, 4V8X|1|AW, 5J8B|1|x, 4V7K|1|Av, 4V9B|1|CC, 4V5M|1|AV, 4V8X|1|CW, 5LMT|1|Z, 3J9Z|1|S6, 4V7K|1|Bv, 4V9N|1|AW(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#Class_IFEPDBIDAssemblyLSU_23SLSU_5SmRNAtRNA/stRNA_OccupancyA_tRNA_anticodonProtein_factors