#IFECompound(s)RNA source organismTitleMethodResolutionDate
15E81|1|2K (rep)tRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
25J8B|1|xP-site tRNA, mRNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.62016-05-25
34V95|1|AVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
44V7J|1|AvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
54V9B|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
64V7J|1|BvRNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
75E81|1|2LtRNA-fMet, mRNAThermus thermophilusStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.952016-01-27
84V9B|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
94V95|1|CVP-site fMet-tRNA, mRNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
104V7K|1|BvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
114V7K|1|AvRNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3')Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
124WT8|1|C4P site trNA, mRNAThermus thermophilusCrystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
134V9A|1|ACTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
144L47|1|XVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
154V7K|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
164L47|1|QVP-site tRNA fMet, messenger RNA, A-site ASL SufA6Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
174V7K|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.62014-07-09
184V9A|1|CCTRNA-FMET, MRNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
194V7J|1|AwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
204V7J|1|BwRNA (77-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
214V9B|1|CDTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
224V4J|1|zP-site tRNAfMET, MRNAThermus thermophilusInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.832014-07-09
234V9B|1|ADTRNA-FMETThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
244V5A|1|AWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
254V5A|1|CWTRNA-FMETEscherichia coliStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
264V8X|1|AVtransfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'Thermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
274V9N|1|CWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
284V8X|1|CVtransfer RNA, BACTERIAL TOXIN YOEBThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
294V9N|1|AWP-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3')Thermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
304V8U|1|CWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
314V8U|1|AWRNAThermus thermophilusCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
324V8X|1|CWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
334V8X|1|AWtransfer RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
346BOK|1|IA16S ribosomal RNA, mRNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
356BOK|1|LC16S ribosomal RNA, mRNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
366BOK|1|D16S ribosomal RNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
376BOK|1|GB16S ribosomal RNAThermus thermophilusE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.552018-05-23
383J9Z|1|S6P-tRNAThermus thermophilusActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
393JA1|1|S2P/E-tRNA, mRNAThermus thermophilusActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
405LMT|1|ZtRNAi, mRNAThermus thermophilusStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)ELECTRON MICROSCOPY4.152016-10-05
415LMR|1|ZtRNAi, mRNAThermus thermophilusStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)ELECTRON MICROSCOPY4.452016-10-05
424V68|1|AVP-SITE TRNA, SYNTHETIC MRNAThermus thermophilusT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
434V5N|1|AVTRNA, MRNAThermus thermophilustRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.62014-07-09
444V5M|1|AVTRNA, MRNAThermus thermophilustRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.82014-07-09

Release history

Release3.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.133
Date2019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-01

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J9Z|1|S6Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.677
26BOK|1|IAE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.5573
36BOK|1|LCE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.5573
45J8B|1|xCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.673
55E81|1|2KStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.9572
64V9B|1|ACCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
74V9A|1|ACCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
84WT8|1|C4Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.477
94V9A|1|CCCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.377
104V9B|1|CCCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
114V8X|1|AVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3576
124V8X|1|CVStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
134V4J|1|zInteractions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.X-RAY DIFFRACTION3.8377
144V68|1|AVT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.476
154L47|1|QVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
164L47|1|XVCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.2277
174V95|1|AVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
184V9N|1|AWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
194V9N|1|CWCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.477
204V7J|1|BvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
214V7K|1|BvStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.676
224V7K|1|AvStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.676
234V7J|1|AvStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.376
244V95|1|CVCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.277
255E81|1|2LStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.9572
265LMR|1|ZStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)ELECTRON MICROSCOPY4.4572
275LMT|1|ZStructure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)ELECTRON MICROSCOPY4.1572
284V5N|1|AVtRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)ELECTRON MICROSCOPY7.677
294V8U|1|CWCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
304V8U|1|AWCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
314V5A|1|AWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
324V5A|1|CWStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.576
334V8X|1|AWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
344V7J|1|AwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
354V8X|1|CWStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.3577
364V7K|1|AwStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.677
374V7J|1|BwStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.377
384V7K|1|BwStructure of RelE nuclease bound to the 70S ribosome (postcleavage state)X-RAY DIFFRACTION3.677
396BOK|1|GBE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.5573
406BOK|1|DE. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosomeX-RAY DIFFRACTION3.5573
414V9B|1|CDCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
424V9B|1|ADCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.177
434V5M|1|AVtRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)ELECTRON MICROSCOPY7.877
443JA1|1|S2Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.677