Equivalence class NR_20.0_20829.7 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep) | U2 snRNA, U6 snRNA, RNA (59-MER) | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 2018-02-21 | |
| 2 | 6J6G|1|L+ 6J6G|1|E | U2 snRNA, U6 snRNA, ACT1 pre-mRNA | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | ELECTRON MICROSCOPY | 3.2 | 2019-04-24 | |
| 3 | 6EXN|1|2+ 6EXN|1|6 | U2 snRNA, U6 snRNA, Intron lariat: UBC4 RNA | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 2018-01-17 | |
| 4 | 5LJ3|1|Z+ 5LJ3|1|V | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 2016-08-03 | |
| 5 | 5ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|F | U2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA-BPS | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 2018-08-29 | |
| 6 | 6J6H|1|L+ 6J6H|1|E | U2 snRNA, U6 snRNA, ACT1 pre-mRNA | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 2019-04-24 | |
| 7 | 5MQ0|1|2+ 5MQ0|1|6 | S.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 2017-01-18 | |
| 8 | 6J6N|1|L+ 6J6N|1|E | U2 snRNA, U6 snRNA, UBC4 pre-mRNA | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | ELECTRON MICROSCOPY | 3.86 | 2019-04-24 | |
| 9 | 6J6Q|1|L+ 6J6Q|1|E | U2 snRNA, U6 snRNA, UBC4 pre-mRNA | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | ELECTRON MICROSCOPY | 3.7 | 2019-04-24 | |
| 10 | 5ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|F | U2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 2018-08-29 | |
| 11 | 5NRL|1|2+ 5NRL|1|4+ 5NRL|1|6 | U2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzyme | Structure of a pre-catalytic spliceosome | ELECTRON MICROSCOPY | 7.2 | 2017-05-31 | |
| 12 | 5LJ5|1|Z+ 5LJ5|1|V | U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNA | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 2016-08-31 |
Release history
| Release | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_20829.7 | NR_20.0_20829.6 | 3.71 | (8) 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V, 6EXN|1|2+6EXN|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F | (4) 6J6G|1|L+6J6G|1|E, 6J6Q|1|L+6J6Q|1|E, 6J6N|1|L+6J6N|1|E, 6J6H|1|L+6J6H|1|E | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 206 |
| 2 | 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 150 |
| 3 | 5NRL|1|2+5NRL|1|4+5NRL|1|6 | Structure of a pre-catalytic spliceosome | ELECTRON MICROSCOPY | 7.2 | 152 |
| 4 | 5LJ3|1|Z+5LJ3|1|V | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 171 |
| 5 | 5LJ5|1|Z+5LJ5|1|V | Overall structure of the yeast spliceosome immediately after branching. | ELECTRON MICROSCOPY | 10 | 171 |
| 6 | 6J6Q|1|L+6J6Q|1|E | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | ELECTRON MICROSCOPY | 3.7 | 210 |
| 7 | 6J6N|1|L+6J6N|1|E | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | ELECTRON MICROSCOPY | 3.86 | 205 |
| 8 | 6J6G|1|L+6J6G|1|E | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | ELECTRON MICROSCOPY | 3.2 | 208 |
| 9 | 6J6H|1|L+6J6H|1|E | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 209 |
| 10 | 5MQ0|1|2+5MQ0|1|6 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 4.17 | 155 |
| 11 | 6BK8|1|2+6BK8|1|6+6BK8|1|i | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 135 |
| 12 | 6EXN|1|2+6EXN|1|6 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 136 |