RNA 3D Hub //

Equivalence class NR_20.0_20829.7 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, RNA (59-MER)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
26J6G|1|L+ 6J6G|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.22019-04-24
36EXN|1|2+ 6EXN|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, Intron lariat: UBC4 RNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
45LJ3|1|Z+ 5LJ3|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
55ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNA-BPSSaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
66J6H|1|L+ 6J6H|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, ACT1 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.62019-04-24
75MQ0|1|2+ 5MQ0|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAS.cerevisiae chromosome II reading frame ORF YBR230c, Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of a spliceosome remodeled for exon ligationElectron microscopy4.172017-01-18
86J6N|1|L+ 6J6N|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.862019-04-24
96J6Q|1|L+ 6J6Q|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.72019-04-24
105ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|FU2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
115NRL|1|2+ 5NRL|1|4+ 5NRL|1|6U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNAU2 snRNA, U4 snRNA, U6 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00004 + RF00015 + RF00026Structure of a pre-catalytic spliceosomeElectron microscopy7.22017-05-31
125LJ5|1|Z+ 5LJ5|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA), Intron of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102016-08-31

Release history

Release3.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_20829.7NR_20.0_20829.63.71(8) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5MQ0|1|2+5MQ0|1|6, 5LJ5|1|Z+5LJ5|1|V, 5LJ3|1|Z+5LJ3|1|V, 6EXN|1|2+6EXN|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i(4) 6J6N|1|L+6J6N|1|E, 6J6H|1|L+6J6H|1|E, 6J6G|1|L+6J6G|1|E, 6J6Q|1|L+6J6Q|1|E(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_20829.7NR_20.0_01315.13.99(6) 5LJ5|1|Z+5LJ5|1|V, 6J6H|1|L+6J6H|1|E, 6J6Q|1|L+6J6Q|1|E, 5LJ3|1|Z+5LJ3|1|V, 6J6G|1|L+6J6G|1|E, 6J6N|1|L+6J6N|1|E(6) 5NRL|1|2+5NRL|1|4+5NRL|1|6, 6EXN|1|2+6EXN|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5MQ0|1|2+5MQ0|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F(0)
NR_20.0_20829.7NR_20.0_01643.13.99(1) 6EXN|1|2+6EXN|1|6(11) 5NRL|1|2+5NRL|1|4+5NRL|1|6, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6J6G|1|L+6J6G|1|E, 5LJ3|1|Z+5LJ3|1|V, 6J6N|1|L+6J6N|1|E, 5MQ0|1|2+5MQ0|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6J6H|1|L+6J6H|1|E, 5LJ5|1|Z+5LJ5|1|V, 6J6Q|1|L+6J6Q|1|E(0)
NR_20.0_20829.7NR_20.0_10510.13.99(2) 5MQ0|1|2+5MQ0|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i(10) 6J6N|1|L+6J6N|1|E, 5LJ5|1|Z+5LJ5|1|V, 6J6H|1|L+6J6H|1|E, 5LJ3|1|Z+5LJ3|1|V, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 6J6Q|1|L+6J6Q|1|E, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 6EXN|1|2+6EXN|1|6, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6J6G|1|L+6J6G|1|E(0)
NR_20.0_20829.7NR_20.0_36828.13.99(1) 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F(11) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6EXN|1|2+6EXN|1|6, 6J6H|1|L+6J6H|1|E, 5LJ5|1|Z+5LJ5|1|V, 6J6Q|1|L+6J6Q|1|E, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6J6G|1|L+6J6G|1|E, 5LJ3|1|Z+5LJ3|1|V, 6J6N|1|L+6J6N|1|E, 5MQ0|1|2+5MQ0|1|6(0)
NR_20.0_20829.7NR_20.0_55865.13.99(1) 5NRL|1|2+5NRL|1|4+5NRL|1|6(11) 6J6N|1|L+6J6N|1|E, 5MQ0|1|2+5MQ0|1|6, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6EXN|1|2+6EXN|1|6, 6J6H|1|L+6J6H|1|E, 5LJ5|1|Z+5LJ5|1|V, 6J6Q|1|L+6J6Q|1|E, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6J6G|1|L+6J6G|1|E, 5LJ3|1|Z+5LJ3|1|V(0)
NR_20.0_20829.7NR_20.0_99228.13.99(1) 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F(11) 6J6G|1|L+6J6G|1|E, 5LJ3|1|Z+5LJ3|1|V, 6J6N|1|L+6J6N|1|E, 5MQ0|1|2+5MQ0|1|6, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 6EXN|1|2+6EXN|1|6, 6J6H|1|L+6J6H|1|E, 5LJ5|1|Z+5LJ5|1|V, 6J6Q|1|L+6J6Q|1|E, 5NRL|1|2+5NRL|1|4+5NRL|1|6, 6BK8|1|2+6BK8|1|6+6BK8|1|i(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15ZWM|1|H+5ZWM|1|I+5ZWM|1|FCryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4206
25ZWO|1|H+5ZWO|1|I+5ZWO|1|FCryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9150
35NRL|1|2+5NRL|1|4+5NRL|1|6Structure of a pre-catalytic spliceosomeELECTRON MICROSCOPY7.2152
45LJ3|1|Z+5LJ3|1|VStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8171
55LJ5|1|Z+5LJ5|1|VOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10171
66J6Q|1|L+6J6Q|1|ECryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7210
76J6N|1|L+6J6N|1|ECryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86205
86J6G|1|L+6J6G|1|ECryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2208
96J6H|1|L+6J6H|1|ECryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6209
105MQ0|1|2+5MQ0|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY4.17155
116BK8|1|2+6BK8|1|6+6BK8|1|iS. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3135
126EXN|1|2+6EXN|1|6Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7136
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