BGSU RNA Site //

Equivalence class NR_20.0_29090.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14J7L|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-ray diffraction1.82013-03-27
25W0M|1|JU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
35BUD|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansEukaryaCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
45W0M|1|IU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
55W0M|1|HU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
64J7M|1|BRNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3')synthetic constructSyntheticCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-ray diffraction1.72013-03-27
75BUD|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansEukaryaCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
86A4E|1|BRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
96A4E|1|DRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
105FN1|1|B5'-R(*UP*UP*UP*UP*UP)-3'Pepino mosaic virusVirusesElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)Electron microscopy3.92015-12-30
115ODV|1|aRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
125ODV|1|bRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
135ODV|1|cRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
145ODV|1|dRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
155ODV|1|eRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
165ODV|1|fRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
175ODV|1|gRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
185ODV|1|hRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
195ODV|1|iRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
205ODV|1|jRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
215ODV|1|kRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
225ODV|1|lRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
235ODV|1|mRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
245ODV|1|nRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
255ODV|1|oRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
265ODV|1|pRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
275ODV|1|qRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
285ODV|1|rRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
295ODV|1|sRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
305ODV|1|tRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
315ODV|1|uRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
325ODV|1|vRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
335ODV|1|wRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27
345ODV|1|xRNA (5'-R(P*UP*UP*UP*UP*U)-3')Watermelon mosaic virusVirusesStructure of Watermelon mosaic virus potyvirus.Electron microscopy42017-09-27

Release history

Release3.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.85
Date2019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_29090.1NR_20.0_02412.13.65(1) 4J7M|1|B(33) 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f, 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|E, 5BUD|1|D, 4J7L|1|B, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v(0)
NR_20.0_29090.1NR_20.0_51248.13.65(1) 5BUD|1|D(33) 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f, 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|E, 4J7M|1|B, 6A4E|1|D, 4J7L|1|B, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u(0)
NR_20.0_29090.1NR_20.0_65328.13.65(24) 5ODV|1|p, 5ODV|1|i, 5ODV|1|s, 5ODV|1|c, 5ODV|1|m, 5ODV|1|v, 5ODV|1|f, 5ODV|1|l, 5ODV|1|o, 5ODV|1|b, 5ODV|1|r, 5ODV|1|e, 5ODV|1|h, 5ODV|1|u, 5ODV|1|x, 5ODV|1|k, 5ODV|1|a, 5ODV|1|n, 5ODV|1|q, 5ODV|1|d, 5ODV|1|g, 5ODV|1|t, 5ODV|1|j, 5ODV|1|w(10) 5BUD|1|D, 5W0M|1|I, 5FN1|1|B, 4J7L|1|B, 4J7M|1|B, 5W0M|1|H, 5BUD|1|E, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J(0)
NR_20.0_29090.1NR_20.0_87093.13.65(1) 5FN1|1|B(33) 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B, 6A4E|1|D, 5W0M|1|I, 6A4E|1|B, 5W0M|1|H, 5W0M|1|J, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f(0)
NR_20.0_29090.1NR_20.0_91461.13.65(1) 5BUD|1|E(33) 5ODV|1|f, 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g(0)
NR_20.0_29090.1NR_20.0_94888.13.65(1) 4J7L|1|B(33) 5ODV|1|e, 5ODV|1|d, 5ODV|1|c, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|E, 5BUD|1|D, 6A4E|1|D, 4J7M|1|B, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f(0)
NR_20.0_29090.1NR_20.0_97573.13.65(3) 5W0M|1|J, 5W0M|1|H, 5W0M|1|I(31) 5ODV|1|e, 5ODV|1|c, 5ODV|1|d, 5ODV|1|b, 5ODV|1|a, 5FN1|1|B, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B, 6A4E|1|D, 6A4E|1|B, 5ODV|1|x, 5ODV|1|w, 5ODV|1|v, 5ODV|1|u, 5ODV|1|t, 5ODV|1|s, 5ODV|1|r, 5ODV|1|q, 5ODV|1|p, 5ODV|1|o, 5ODV|1|n, 5ODV|1|m, 5ODV|1|l, 5ODV|1|k, 5ODV|1|j, 5ODV|1|i, 5ODV|1|h, 5ODV|1|g, 5ODV|1|f(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_29090.1NR_20.0_17996.13.86(34) 5ODV|1|k, 5ODV|1|w, 5ODV|1|c, 5ODV|1|p, 5ODV|1|h, 4J7L|1|B, 6A4E|1|B, 5ODV|1|u, 5ODV|1|m, 5ODV|1|a, 5ODV|1|f, 5W0M|1|I, 5ODV|1|r, 5BUD|1|E, 5ODV|1|x, 5ODV|1|d, 5ODV|1|i, 6A4E|1|D, 5ODV|1|n, 5ODV|1|g, 5ODV|1|s, 5ODV|1|l, 5ODV|1|q, 4J7M|1|B, 5ODV|1|v, 5ODV|1|b, 5W0M|1|J, 5FN1|1|B, 5ODV|1|e, 5ODV|1|j, 5ODV|1|o, 5ODV|1|t, 5W0M|1|H, 5BUD|1|D(0) (35) 6HXX|1|Af, 6HXX|1|At, 6HXX|1|Bb, 6HXX|1|Ah, 6HXX|1|Bd, 6HXX|1|Ap, 6HXX|1|Av, 6HXX|1|Aj, 6HXX|1|Bf, 6HXX|1|Ar, 6HXX|1|Al, 6HXX|1|Bh, 6HXX|1|Ag, 6HXX|1|Aa, 6HXX|1|Ai, 6HXX|1|Ax, 6HXX|1|Ak, 6HXX|1|Ac, 6HXX|1|Az, 6HXX|1|Am, 6HXX|1|Ao, 6HXX|1|Aw, 6HXX|1|Aq, 6HXX|1|Ay, 6HXX|1|Ae, 6HXX|1|Ba, 6HXX|1|As, 6HXX|1|Bc, 6HXX|1|Be, 6HXX|1|Ad, 6HXX|1|Bg, 6HXX|1|Au, 6HXX|1|Bi, 6HXX|1|Ab, 6HXX|1|An

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16A4E|1|DTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
24J7M|1|BCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-RAY DIFFRACTION1.73
34J7L|1|BCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-RAY DIFFRACTION1.85
45BUD|1|DCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.994
55BUD|1|ECrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.995
65ODV|1|fStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
75ODV|1|tStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
85ODV|1|uStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
95ODV|1|hStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
105ODV|1|oStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
115ODV|1|qStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
125ODV|1|lStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
135ODV|1|iStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
145ODV|1|aStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
155ODV|1|rStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
165ODV|1|bStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
175ODV|1|jStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
185ODV|1|pStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
195ODV|1|cStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
205ODV|1|dStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
215ODV|1|kStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
225ODV|1|eStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
235ODV|1|gStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
245ODV|1|sStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
255ODV|1|wStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
265ODV|1|mStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
275ODV|1|xStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
285ODV|1|nStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
295ODV|1|vStructure of Watermelon mosaic virus potyvirus.ELECTRON MICROSCOPY45
305W0M|1|JStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
315W0M|1|IStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
325W0M|1|HStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
335FN1|1|BElectron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus)ELECTRON MICROSCOPY3.95
346A4E|1|BTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
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