Equivalence class NR_20.0_41742.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8FR8|1|B (rep) | 5S ribosomal RNA | 5S rRNA (118-MER) | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | Electron microscopy | 2.76 | 2023-05-17 |
| 2 | 7KGB|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | Electron microscopy | 2.7 | 2022-01-19 |
| 3 | 7MT7|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P and E site tRNAs | Electron microscopy | 2.71 | 2022-02-02 |
| 4 | 7MT2|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S initiation complex | Electron microscopy | 2.76 | 2022-02-02 |
| 5 | 7MSM|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | Electron microscopy | 2.79 | 2022-02-02 |
| 6 | 7MT3|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70S with P/E tRNA | Electron microscopy | 2.8 | 2022-02-02 |
| 7 | 7S0S|1|i | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | Electron microscopy | 3.05 | 2022-03-30 |
| 8 | 7MSC|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | Electron microscopy | 2.97 | 2022-02-02 |
| 9 | 5XYM|1|B | 5S ribosomal RNA | 5S RNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Large subunit of Mycobacterium smegmatis | Electron microscopy | 3.08 | 2017-09-27 |
| 10 | 7MSZ|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | Electron microscopy | 3.1 | 2022-02-02 |
| 11 | 5O60|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | Electron microscopy | 3.18 | 2017-07-12 |
| 12 | 7MSH|1|B | 5S ribosomal RNA | 5S rRNA | Mycobacterium tuberculosis H37Rv | Bacteria | RF00001 | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | Electron microscopy | 3.23 | 2022-02-02 |
| 13 | 7XAM|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | Electron microscopy | 3.5 | 2023-05-03 |
| 14 | 6DZP|1|B | 5S ribosomal RNA | 5S rRNA | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | Electron microscopy | 3.42 | 2018-10-03 |
| 15 | 6DZI|1|B | 5S ribosomal RNA | 5S RNA (118-MER) | Mycolicibacterium smegmatis | Bacteria | RF00001 | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | Electron microscopy | 3.46 | 2018-09-26 |
| 16 | 7F0D|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycobacterium tuberculosis H37Ra | Bacteria | RF00001 | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | Electron microscopy | 3.3 | 2022-06-29 |
| 17 | 7Y41|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF00001 | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | Electron microscopy | 4.1 | 2023-05-03 |
Release history
| Release | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8FR8|1|B | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | ELECTRON MICROSCOPY | 2.76 | 118 |
| 2 | 7S0S|1|i | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.05 | 118 |
| 3 | 7Y41|1|B | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | ELECTRON MICROSCOPY | 4.1 | 118 |
| 4 | 7XAM|1|B | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | ELECTRON MICROSCOPY | 3.5 | 118 |
| 5 | 5O60|1|B | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.18 | 118 |
| 6 | 6DZI|1|B | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | ELECTRON MICROSCOPY | 3.46 | 118 |
| 7 | 6DZP|1|B | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.42 | 118 |
| 8 | 5XYM|1|B | Large subunit of Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.08 | 116 |
| 9 | 7MSC|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R0 state | ELECTRON MICROSCOPY | 2.97 | 115 |
| 10 | 7MSH|1|B | Mtb 70SIC in complex with MtbEttA at Pre_R1 state | ELECTRON MICROSCOPY | 3.23 | 115 |
| 11 | 7MT3|1|B | Mtb 70S with P/E tRNA | ELECTRON MICROSCOPY | 2.8 | 115 |
| 12 | 7MT2|1|B | Mtb 70S initiation complex | ELECTRON MICROSCOPY | 2.76 | 115 |
| 13 | 7MT7|1|B | Mtb 70S with P and E site tRNAs | ELECTRON MICROSCOPY | 2.71 | 115 |
| 14 | 7MSM|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R0 state | ELECTRON MICROSCOPY | 2.79 | 115 |
| 15 | 7MSZ|1|B | Mtb 70SIC in complex with MtbEttA at Trans_R1 state | ELECTRON MICROSCOPY | 3.1 | 115 |
| 16 | 7KGB|1|B | CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9 | ELECTRON MICROSCOPY | 2.7 | 115 |
| 17 | 7F0D|1|B | Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin | ELECTRON MICROSCOPY | 3.3 | 115 |