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Equivalence class NR_20.0_46995.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15VYC|1|i2 (rep)Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
25VYC|1|i3Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
35VYC|1|i5Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
45VYC|1|i1Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
55VYC|1|i6Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
65VYC|1|i4Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
76EK0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92018-01-24
84UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
95AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20
105A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeElectron microscopy3.92015-07-15
115OA3|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human 40S-eIF2D-re-initiation complexElectron microscopy4.22017-08-09
125LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.62017-04-26
134V6X|1|B2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the human 80S ribosomeElectron microscopy52014-07-09
145T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
156FEC|1|ASmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14
165A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexElectron microscopy3.82015-12-02

Release history

Release3.133.143.153.163.173.183.193.203.213.223.233.24
Date2018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_46995.4NR_20.0_46995.33.13(15) 6EK0|1|S2, 5VYC|1|i6, 5VYC|1|i5, 5VYC|1|i4, 5VYC|1|i3, 5VYC|1|i2, 5VYC|1|i1, 5T2C|1|AA, 5OA3|1|2, 5LKS|1|S2, 5AJ0|1|B1, 5A8L|1|B, 5A2Q|1|2, 4V6X|1|B2, 4UG0|1|S2(1) 6FEC|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_46995.4NR_20.0_46995.53.25(16) 4UG0|1|S2, 6EK0|1|S2, 5A2Q|1|2, 5LKS|1|S2, 5T2C|1|AA, 5VYC|1|i2, 5VYC|1|i4, 5AJ0|1|B1, 5VYC|1|i6, 5OA3|1|2, 6FEC|1|A, 5VYC|1|i1, 4V6X|1|B2, 5VYC|1|i3, 5A8L|1|B, 5VYC|1|i5(0) (7) 6G51|1|2, 6G4S|1|2, 6G5H|1|2, 6G18|1|2, 6G4W|1|2, 6G53|1|2, 6G5I|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
4V6X|1|B2		Structure of the human 80S ribosomeELECTRON MICROSCOPY51861
2
5A2Q|1|2		Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
3
5OA3|1|2		Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.21661
4
5VYC|1|i6		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
5
5VYC|1|i2		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
6
5VYC|1|i1		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
7
5VYC|1|i5		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
8
5VYC|1|i3		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
9
5VYC|1|i4		Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
10
5T2C|1|AA		CryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
11
4UG0|1|S2		STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
12
5LKS|1|S2		Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
13
6FEC|1|A		Human cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.31776
14
5AJ0|1|B1		Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
15
6EK0|1|S2		High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
16
5A8L|1|B		Human eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867

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