#IFECompound(s)RNA source organismTitleMethodResolutionDate
16N6F|1|D (rep)RNA (5'-R(P*GP*C)-3')synthetic constructVibrio cholerae Oligoribonuclease bound to pGCX-RAY DIFFRACTION1.742019-06-12
24OHY|1|BRNA (5'-R(*GP*C)-3')C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-RAY DIFFRACTION22014-05-14
34OI1|1|BRNA (5'-R(*GP*C)-3')Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-RAY DIFFRACTION2.32014-05-14
44OI0|1|BRNA (5'-R(*GP*C)-3')bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-RAY DIFFRACTION2.22014-05-14
56RAZ|1|YDNADrosophila melanogasterD. melanogaster CMG-DNA, State 2BELECTRON MICROSCOPY4.462019-09-18

Release history

Release3.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.130
Date2019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_50478.4NR_20.0_50478.33.92(4) 6N6F|1|D, 4OI1|1|B, 4OI0|1|B, 4OHY|1|B(1) 6RAZ|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14OHY|1|BC. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-RAY DIFFRACTION22
24OI1|1|BClp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-RAY DIFFRACTION2.32
34OI0|1|Bbound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-RAY DIFFRACTION2.22
46RAZ|1|YD. melanogaster CMG-DNA, State 2BELECTRON MICROSCOPY4.462
56N6F|1|DVibrio cholerae Oligoribonuclease bound to pGCX-RAY DIFFRACTION1.743