#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18GLP|1|L7 (rep)5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)Electron microscopy1.672023-04-19
28A3D|1|B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human mature large subunit of the ribosome with eIF6 and homoharringtonine boundElectron microscopy1.672023-03-08
37OW7|1|B5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001EIF6-bound large subunit of the human ribosomeElectron microscopy2.22022-10-05
48G5Y|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)Electron microscopy2.292023-04-19
57XNY|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsElectron microscopy2.52023-04-05
68G60|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)Electron microscopy2.542023-04-19
78FL7|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J2)Electron microscopy2.552023-07-12
88FLE|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L2)Electron microscopy2.482023-07-12
98FLB|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K2)Electron microscopy2.552023-07-12
106ZMI|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.62020-08-19
118G5Z|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)Electron microscopy2.642023-04-19
128FL6|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J1)Electron microscopy2.622023-07-12
138FLA|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K1)Electron microscopy2.632023-07-12
148FLD|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L1)Electron microscopy2.582023-07-12
156ZM7|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
167XNX|1|L25S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsElectron microscopy2.72023-04-05
178FL3|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I2)Electron microscopy2.532023-07-12
187F5S|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human delta-METTL18 60S ribosomeElectron microscopy2.722022-06-22
198FLF|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State L3)Electron microscopy2.652023-07-12
208FL9|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State J3)Electron microscopy2.752023-07-12
218G6J|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)Electron microscopy2.82023-04-19
226XA1|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of a drug-like compound stalled human translation termination complexElectron microscopy2.82020-10-07
238IDT|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State GElectron microscopy2.82023-08-09
248FLC|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State K3)Electron microscopy2.762023-07-12
256Y6X|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Tetracenomycin X bound to the human ribosomeElectron microscopy2.82020-07-08
268FL2|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I1)Electron microscopy2.672023-07-12
276Z6N|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
286QZP|1|L75S ribosomal RNA5S rRNA (120-MER)Homo sapiensEukaryaRF00001High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
298FL0|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nucleolar pre-60S ribosomal subunit (State H)Electron microscopy2.912023-07-12
308G61|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)Electron microscopy2.942023-04-19
316Z6L|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
326ZME|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy32020-08-12
337QVP|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
347QVP|1|L95S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
358IDY|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State FElectron microscopy32023-08-09
368INF|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State F'Electron microscopy32023-08-09
376LQM|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of a pre-60S ribosomal subunit - state CElectron microscopy3.092020-08-26
386Z6M|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1Electron microscopy3.12020-07-29
396ZMO|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.12020-08-19
406LSR|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of a pre-60S ribosomal subunit - state BElectron microscopy3.132020-08-26
416LU8|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of a human pre-60S ribosomal subunit - state AElectron microscopy3.132020-08-26
426OLE|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
438FL4|1|L45S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Human nuclear pre-60S ribosomal subunit (State I3)Electron microscopy2.892023-07-12
446Y2L|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in POST stateElectron microscopy32020-04-15
456OM0|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.12019-06-19
468INE|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State G'Electron microscopy3.22023-08-09
476LSS|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Cryo-EM structure of a pre-60S ribosomal subunit - state preAElectron microscopy3.232020-08-26
486Y0G|1|L75S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001Structure of human ribosome in classical-PRE stateElectron microscopy3.22020-04-15
497BHP|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human Ebp1 - 80S ribosomeElectron microscopy3.32021-02-03
508IR1|1|W5S ribosomal RNA5S RNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State AElectron microscopy3.32023-08-09
518IE3|1|55S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State EElectron microscopy3.32023-08-09
528IPD|1|35S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State CElectron microscopy3.22023-08-09
538IPY|1|35S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State D'Electron microscopy3.22023-08-09
548INK|1|35S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State DElectron microscopy3.22023-08-09
558IR3|1|55S ribosomal RNA5S RNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State B'Electron microscopy3.52023-08-09
566OLG|1|A45S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.42019-06-19
576OLI|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.52019-06-19
586Y57|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
595T2C|1|B5S ribosomal RNA5S rRNAHomo sapiensEukaryaRF00001CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
604UG0|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
616OM7|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsElectron microscopy3.72019-06-19
626W6L|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo-EM structure of the human ribosome-TMCO1 transloconElectron microscopy3.842020-09-02
636OLF|1|E5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsElectron microscopy3.92019-06-19
646IP5|1|1B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)Electron microscopy3.92019-05-29
656OLZ|1|A45S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAElectron microscopy3.92019-06-19
666IP8|1|1B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)Electron microscopy3.92019-05-29
675LKS|1|L75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.62017-04-26
685AJ0|1|A45S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20
698IPX|1|35S ribosomal RNA5S RNAHomo sapiensEukaryaRF00001human nuclear pre-60S ribosomal particle - State C'Electron microscopy4.32023-08-09
706IP6|1|1B5S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)Electron microscopy4.52019-05-29
714V6X|1|A75S ribosomal RNA5S ribosomal RNAHomo sapiensEukaryaRF00001Structure of the human 80S ribosomeElectron microscopy52014-07-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18FL0|1|L4Human nucleolar pre-60S ribosomal subunit (State H)ELECTRON MICROSCOPY2.91120
28IR3|1|5human nuclear pre-60S ribosomal particle - State B'ELECTRON MICROSCOPY3.5120
38IR1|1|Whuman nuclear pre-60S ribosomal particle - State AELECTRON MICROSCOPY3.3120
48IE3|1|5human nuclear pre-60S ribosomal particle - State EELECTRON MICROSCOPY3.3120
58INE|1|5human nuclear pre-60S ribosomal particle - State G'ELECTRON MICROSCOPY3.2120
68INF|1|5human nuclear pre-60S ribosomal particle - State F'ELECTRON MICROSCOPY3120
78IDY|1|5human nuclear pre-60S ribosomal particle - State FELECTRON MICROSCOPY3120
88IDT|1|5human nuclear pre-60S ribosomal particle - State GELECTRON MICROSCOPY2.8120
96LSS|1|5Cryo-EM structure of a pre-60S ribosomal subunit - state preAELECTRON MICROSCOPY3.23120
106LU8|1|5Cryo-EM structure of a human pre-60S ribosomal subunit - state AELECTRON MICROSCOPY3.13120
118FLF|1|L4Human nuclear pre-60S ribosomal subunit (State L3)ELECTRON MICROSCOPY2.65120
128FLE|1|L4Human nuclear pre-60S ribosomal subunit (State L2)ELECTRON MICROSCOPY2.48120
138FLD|1|L4Human nuclear pre-60S ribosomal subunit (State L1)ELECTRON MICROSCOPY2.58120
148FLB|1|L4Human nuclear pre-60S ribosomal subunit (State K2)ELECTRON MICROSCOPY2.55120
158FLA|1|L4Human nuclear pre-60S ribosomal subunit (State K1)ELECTRON MICROSCOPY2.63120
168FLC|1|L4Human nuclear pre-60S ribosomal subunit (State K3)ELECTRON MICROSCOPY2.76120
178FL7|1|L4Human nuclear pre-60S ribosomal subunit (State J2)ELECTRON MICROSCOPY2.55120
188FL6|1|L4Human nuclear pre-60S ribosomal subunit (State J1)ELECTRON MICROSCOPY2.62120
198FL9|1|L4Human nuclear pre-60S ribosomal subunit (State J3)ELECTRON MICROSCOPY2.75120
206LSR|1|5Cryo-EM structure of a pre-60S ribosomal subunit - state BELECTRON MICROSCOPY3.13120
216W6L|1|ECryo-EM structure of the human ribosome-TMCO1 transloconELECTRON MICROSCOPY3.84119
227BHP|1|L7Cryo-EM structure of the human Ebp1 - 80S ribosomeELECTRON MICROSCOPY3.3120
235AJ0|1|A4Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.5119
246OLG|1|A4Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.4119
256OLZ|1|A4Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.9119
266OLF|1|EHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.9119
276OM7|1|EHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.7119
286OLI|1|EStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.5119
296OLE|1|EHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.1119
306OM0|1|EHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.1119
317OW7|1|BEIF6-bound large subunit of the human ribosomeELECTRON MICROSCOPY2.2120
326QZP|1|L7High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.9120
336XA1|1|L7Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.8120
346LQM|1|5Cryo-EM structure of a pre-60S ribosomal subunit - state CELECTRON MICROSCOPY3.09120
357XNX|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cellsELECTRON MICROSCOPY2.7120
367XNY|1|L2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsELECTRON MICROSCOPY2.5120
376ZME|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY3120
386ZM7|1|L7SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.7120
396ZMI|1|L7SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.6120
406ZMO|1|L7SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.1120
416Z6L|1|L7Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY3120
426Z6N|1|L7Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.9120
436Z6M|1|L7Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.1120
446Y6X|1|L7Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.8120
457F5S|1|L7human delta-METTL18 60S ribosomeELECTRON MICROSCOPY2.72120
468A3D|1|BHuman mature large subunit of the ribosome with eIF6 and homoharringtonine boundELECTRON MICROSCOPY1.67120
478GLP|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)ELECTRON MICROSCOPY1.67120
488G5Y|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)ELECTRON MICROSCOPY2.29120
498G60|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)ELECTRON MICROSCOPY2.54120
508G6J|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)ELECTRON MICROSCOPY2.8120
518G5Z|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)ELECTRON MICROSCOPY2.64120
528G61|1|L7mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)ELECTRON MICROSCOPY2.94120
537QVP|1|L7Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120
546Y2L|1|L7Structure of human ribosome in POST stateELECTRON MICROSCOPY3120
556Y0G|1|L7Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.2120
566Y57|1|L7Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.5120
577QVP|1|L9Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY3120
585T2C|1|BCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.6120
594UG0|1|L7STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.6120
606IP6|1|1BCryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)ELECTRON MICROSCOPY4.5120
616IP5|1|1BCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.9120
626IP8|1|1BCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.9120
635LKS|1|L7Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.6120
644V6X|1|A7Structure of the human 80S ribosomeELECTRON MICROSCOPY5121
658FL2|1|L4Human nuclear pre-60S ribosomal subunit (State I1)ELECTRON MICROSCOPY2.67117
668FL3|1|L4Human nuclear pre-60S ribosomal subunit (State I2)ELECTRON MICROSCOPY2.53117
678FL4|1|L4Human nuclear pre-60S ribosomal subunit (State I3)ELECTRON MICROSCOPY2.89117
688IPD|1|3human nuclear pre-60S ribosomal particle - State CELECTRON MICROSCOPY3.2115
698INK|1|3human nuclear pre-60S ribosomal particle - State DELECTRON MICROSCOPY3.2115
708IPX|1|3human nuclear pre-60S ribosomal particle - State C'ELECTRON MICROSCOPY4.3115
718IPY|1|3human nuclear pre-60S ribosomal particle - State D'ELECTRON MICROSCOPY3.2115
Copyright 2024 BGSU RNA group. Page generated in 0.8700 s