BGSU RNA Site //

Equivalence class NR_20.0_56118.5 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16ASO|1|I (rep)U6 spliceosomal RNASaccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-RAY DIFFRACTION2.712018-05-09
25VSU|1|IU6 spliceosomal RNASaccharomyces cerevisiae strain T8 chromosome XII sequenceSaccharomyces cerevisiaeEukaryaRF00026Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-RAY DIFFRACTION3.12018-05-09
35MPS|1|6U6 spliceosomal RNASaccharomyces cerevisiae strain T.52_2H chromosome XII sequence, U2 snRNA, Yeast UBC4 gene for ubiquitin-conjugating enzymeSaccharomyces cerevisiaeEukaryaRF00026Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.852017-01-18
45YLZ|1|DU6 spliceosomal RNAU6 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00026Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.62018-07-18
55GMK|1|E+ 5GMK|1|LU6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, Intron_BPS, 5'-Splicing SiteSaccharomyces cerevisiaeEukaryaRF00026 + RF00004Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.42016-08-17
65WSG|1|EU6 spliceosomal RNASaccharomyces cerevisiae S288c SNR6 snRNA, RNA (91-MER), 3'-intron-lariat, 5'-intron-lariatSaccharomyces cerevisiaeEukaryaRF00026Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY42017-01-25
75LQW|1|6+ 5LQW|1|2U6 spliceosomal RNA + U2 splicesomal small nuclear RNAU6 snRNA, U2 snRNA, actin pre-mRNASaccharomyces cerevisiaeEukaryaRF00026 + RF00004yeast activated spliceosomeELECTRON MICROSCOPY5.82016-10-05

Release history

Release3.313.32
Date2018-07-202018-07-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_56118.5NR_20.0_56118.43.31(6) 6ASO|1|I, 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L(1) 5YLZ|1|D(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_56118.5NR_20.0_56118.63.33(7) 5WSG|1|E, 5VSU|1|I, 5MPS|1|6, 5LQW|1|6+5LQW|1|2, 5GMK|1|E+5GMK|1|L, 6ASO|1|I, 5YLZ|1|D(0) (1) 5Y88|1|D

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15LQW|1|6+5LQW|1|2yeast activated spliceosomeELECTRON MICROSCOPY5.8102
25YLZ|1|DCryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6103
35WSG|1|ECryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4103
45GMK|1|E+5GMK|1|LCryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4103
55MPS|1|6Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.8599
66ASO|1|IStructure of yeast U6 snRNP with 3'-phosphate terminated U6 RNAX-RAY DIFFRACTION2.7169
75VSU|1|IStructure of yeast U6 snRNP with 2'-phosphate terminated U6 RNAX-RAY DIFFRACTION3.172