Equivalence class NR_20.0_60125.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6T4Q|1|6 (rep) | Transfer RNA | ICG tRNA Arg (P/P), mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 2 | 6SNT|1|6 | Transfer RNA | tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 3 | 6Q8Y|1|n | Transfer RNA | P-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 2019-03-13 |
| 4 | 7ZS5|1|2 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | Electron microscopy | 3.2 | 2023-02-22 |
| 5 | 7RR5|1|P | Transfer RNA | P-tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 6 | 6SV4|1|n | Transfer RNA | tRNA (P/P) | Saccharomyces cerevisiae | Eukarya | RF00005 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 7 | 6T7I|1|6 | Transfer RNA | ICG tRNA Arg, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 2019-12-25 |
| 8 | 7ZPQ|1|6 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1) | Electron microscopy | 3.47 | 2023-02-22 |
| 9 | 7ZUW|1|6 | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | Electron microscopy | 4.3 | 2023-02-22 |
| 10 | 6I7O|1|n | Transfer RNA | P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
Release history
| Release | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7RR5|1|P | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 76 |
| 2 | 6SNT|1|6 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 75 |
| 3 | 6T7I|1|6 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | ELECTRON MICROSCOPY | 3.2 | 75 |
| 4 | 6T4Q|1|6 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 75 |
| 5 | 6Q8Y|1|n | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | ELECTRON MICROSCOPY | 3.1 | 76 |
| 6 | 6I7O|1|n | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | ELECTRON MICROSCOPY | 5.3 | 76 |
| 7 | 6SV4|1|n | The cryo-EM structure of SDD1-stalled collided trisome. | ELECTRON MICROSCOPY | 3.3 | 76 |
| 8 | 7ZUW|1|6 | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 4.3 | 76 |
| 9 | 7ZPQ|1|6 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1) | ELECTRON MICROSCOPY | 3.47 | 76 |
| 10 | 7ZS5|1|2 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | ELECTRON MICROSCOPY | 3.2 | 76 |