#PDBTitleRNA source organismCompoundsMethodResolutionDate
11XPE|A (rep)HIV-1 subtype B genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION1.942005-10-18
21K9W|AHIV-1(MAL) RNA Dimerization Initiation SiteHIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNAX-RAY DIFFRACTION3.12001-11-30
31XP7|AHIV-1 subtype F genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.52005-10-18
41XPF|AHIV-1 subtype A genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.32005-10-18
51Y3O|AHIV-1 DIS RNA subtype F- Mn soaked5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.72005-11-08
61Y3S|AHIV-1 DIS RNA subtype F- MPD form5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.252005-11-08
71YXP|AHIV-1 DIS RNA subtype F- Zn soaked5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.42006-01-31
81ZCI|AHIV-1 DIS RNA subtype F- monoclinic form5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION1.652006-01-31
92B8R|AStructure oF HIV-1(LAI) genomic RNA DIS5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.62005-10-25
102B8S|AStructure of HIV-1(MAL) genomic RNA DIS5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.762005-10-25
112FCX|AHIV-1 DIS kissing-loop in complex with neamineHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION22006-05-16
122FCY|AHIV-1 DIS kissing-loop in complex with NeomycinHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION2.22006-05-16
132FCZ|AHIV-1 DIS kissing-loop in complex with ribostamycinHIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION2.012006-05-16
142FD0|AHIV-1 DIS kissing-loop in complex with lividomycinHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION1.82006-05-16

Release history

Release0.160.170.180.190.200.210.220.230.240.250.260.270.280.290.300.310.320.330.340.350.360.370.380.390.400.410.420.430.440.450.460.470.480.490.500.510.520.530.540.550.560.570.580.590.600.610.620.630.640.650.660.670.680.690.700.710.720.730.740.750.760.770.780.790.800.810.820.830.840.850.860.870.880.890.900.910.920.930.940.950.960.970.980.990.1000.1010.1020.1030.1040.1050.1060.1070.1080.1090.1101.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.161.171.181.191.201.211.221.231.241.251.261.271.281.291.301.311.321.331.341.351.361.371.381.391.401.411.421.431.441.451.461.471.481.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.761.771.781.791.801.811.821.831.841.851.861.871.881.89
Date2011-05-072011-05-142011-05-212011-05-282011-06-042011-06-112011-06-182011-06-252011-07-022011-07-092011-07-162011-07-232011-07-302011-08-062011-08-132011-08-202011-08-272011-09-032011-09-102011-09-172011-09-242011-10-012011-10-082011-10-152011-10-222011-10-292011-11-052011-11-122011-11-192011-11-262011-12-032011-12-102011-12-172011-12-242011-12-312012-01-072012-01-142012-01-212012-01-282012-02-042012-02-112012-02-182012-02-252012-03-032012-03-102012-03-172012-03-242012-03-312012-04-072012-04-142012-04-212012-04-282012-05-052012-05-122012-05-192012-05-262012-06-022012-06-092012-06-162012-06-232012-06-302012-07-072012-07-142012-07-212012-07-282012-08-042012-08-112012-08-182012-08-252012-09-012012-09-082012-09-152012-09-222012-09-292012-10-062012-10-132012-10-202012-10-272012-11-032012-11-102012-11-172012-11-242012-12-012012-12-082012-12-152012-12-222012-12-292013-01-052013-01-122013-01-192013-01-262013-02-022013-02-092013-02-162013-02-232013-03-022013-03-092013-03-162013-03-232013-03-302013-04-062013-04-132013-04-202013-04-272013-05-042013-05-112013-05-182013-05-252013-06-012013-06-082013-06-152013-06-222013-06-292013-07-062013-07-132013-07-202013-07-272013-08-032013-08-102013-08-172013-08-242013-08-312013-09-072013-09-142013-09-212013-09-282013-10-052013-10-122013-10-192013-10-262013-11-092013-11-162013-11-232013-11-302013-12-072013-12-142013-12-212013-12-282014-01-042014-01-112014-01-182014-01-252014-02-012014-02-082014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-052014-09-122014-09-192014-09-262014-10-032014-10-102014-10-172014-10-242014-10-312014-11-072014-11-142014-11-212014-11-282014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11XPF|AHIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.323
22B8R|AStructure oF HIV-1(LAI) genomic RNA DISX-RAY DIFFRACTION2.623
31XPE|AHIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.9423
42B8S|AStructure of HIV-1(MAL) genomic RNA DISX-RAY DIFFRACTION2.7623
51YXP|AHIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.423
61Y3S|AHIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.2523
71Y3O|AHIV-1 DIS RNA subtype F- Mn soakedX-RAY DIFFRACTION2.723
81XP7|AHIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.523
91ZCI|AHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6523
101K9W|AHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.123
112FCX|AHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION223
122FD0|AHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.823
132FCY|AHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.223
142FCZ|AHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0123