Equivalence class NR_20.0_68503.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3F4H|1|Y+ 3F4H|1|X (rep) | FMN riboswitch | Crystal structure of the FMN riboswitch bound to roseoflavin | X-ray diffraction | 3 | 2009-01-27 | ||||
| 2 | 6BFB|1|Y+ 6BFB|1|X | RNA (54-MER), RNA (56-MER) | Fusobacterium nucleatum | Bacteria | Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3 | X-ray diffraction | 2.82 | 2018-02-21 | ||
| 3 | 3F4E|1|Y+ 3F4E|1|X | FMN riboswitch | Crystal structure of the FMN riboswitch bound to FMN, split RNA. | X-ray diffraction | 3.05 | 2009-01-27 | ||||
| 4 | 2YIF|1|Z+ 2YIF|1|X | FMN RIBOSWITCH | Fusobacterium nucleatum | Bacteria | Crystal structure of a F. nucleatum FMN riboswitch - Free state | X-ray diffraction | 3.3 | 2011-08-31 |
Release history
| Release | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_68503.2 | NR_20.0_68503.1 | 3.10 | (3) 3F4H|1|Y+3F4H|1|X, 3F4E|1|Y+3F4E|1|X, 2YIF|1|Z+2YIF|1|X | (1) 6BFB|1|Y+6BFB|1|X | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_68503.2 | NR_20.0_75133.1 | 3.38 | (4) 6BFB|1|Y+6BFB|1|X, 3F4H|1|Y+3F4H|1|X, 3F4E|1|Y+3F4E|1|X, 2YIF|1|Z+2YIF|1|X | (0) | (3) 6DN3|1|Y+6DN3|1|X, 6DN2|1|Y+6DN2|1|X, 6DN1|1|Z+6DN1|1|X |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6BFB|1|Y+6BFB|1|X | Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3 | X-RAY DIFFRACTION | 2.82 | 56 |
| 2 | 3F4H|1|Y+3F4H|1|X | Crystal structure of the FMN riboswitch bound to roseoflavin | X-RAY DIFFRACTION | 3 | 56 |
| 3 | 3F4E|1|Y+3F4E|1|X | Crystal structure of the FMN riboswitch bound to FMN, split RNA. | X-RAY DIFFRACTION | 3.05 | 56 |
| 4 | 2YIF|1|Z+2YIF|1|X | Crystal structure of a F. nucleatum FMN riboswitch - Free state | X-RAY DIFFRACTION | 3.3 | 56 |