BGSU RNA Site //

Equivalence class NR_20.0_73286.11 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16QW6|1|5 (rep)U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.Electron microscopy2.922019-04-17
26QX9|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).Electron microscopy3.282019-04-17
36QDV|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: MINX mRNAHomo sapiensEukaryaRF00020Human post-catalytic P complex spliceosomeElectron microscopy3.32019-02-20
46ZYM|1|5U5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Human C Complex Spliceosome - High-resolution COREElectron microscopy3.42020-10-14
56ICZ|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromElectron microscopy32019-03-13
66FF4|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy3.42018-08-29
76ID0|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionElectron microscopy2.92019-03-13
85XJC|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromElectron microscopy3.62017-07-05
96ID1|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionElectron microscopy2.862019-03-13
105YZG|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionElectron microscopy4.12018-08-08
116AHD|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionElectron microscopy3.82018-11-14
125O9Z|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)Electron microscopy4.52017-08-16
136FF7|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre-mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy4.52019-03-13
145Z58|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.Electron microscopy4.92018-09-19
157A5P|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Human C Complex Spliceosome - Medium-resolution PERIPHERYElectron microscopy52020-10-14
165Z56|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.Electron microscopy5.12018-09-19
176AH0|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)Electron microscopy5.72018-11-14
185MQF|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron)Homo sapiensEukaryaRF00020Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)Electron microscopy5.92017-03-22
195Z57|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromElectron microscopy6.52018-09-19
203JCR|1|HU5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF000203D structure determination of the human*U4/U6.U5* tri-snRNP complexElectron microscopy72016-03-09

Release history

Release3.1483.1493.1503.1513.1523.1533.1543.155
Date2020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_73286.11NR_20.0_73286.103.148(18) 6ID0|1|B, 6ICZ|1|B, 6FF7|1|5, 6FF4|1|5, 6AHD|1|B, 6AH0|1|B, 5Z58|1|B, 5Z57|1|B, 5Z56|1|B, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 6QX9|1|5, 6QW6|1|5, 3JCR|1|H, 6QDV|1|5, 6ID1|1|B(2) 6ZYM|1|5, 7A5P|1|5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_73286.11NR_20.0_73286.123.156(20) 5Z57|1|B, 6ID1|1|B, 5Z56|1|B, 6ID0|1|B, 5YZG|1|B, 6ICZ|1|B, 5XJC|1|B, 6FF7|1|5, 7A5P|1|5, 5O9Z|1|5, 6FF4|1|5, 6ZYM|1|5, 5MQF|1|5, 6AHD|1|B, 6QX9|1|5, 3JCR|1|H, 6AH0|1|B, 6QW6|1|5, 5Z58|1|B, 6QDV|1|5(0) (2) 7ABF|1|5, 7AAV|1|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16AHD|1|BThe Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionELECTRON MICROSCOPY3.8115
26AH0|1|BThe Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)ELECTRON MICROSCOPY5.7115
35O9Z|1|5Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)ELECTRON MICROSCOPY4.5114
47A5P|1|5Human C Complex Spliceosome - Medium-resolution PERIPHERYELECTRON MICROSCOPY540
55MQF|1|5Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)ELECTRON MICROSCOPY5.9114
66ZYM|1|5Human C Complex Spliceosome - High-resolution COREELECTRON MICROSCOPY3.474
76FF7|1|5human Bact spliceosome core structureELECTRON MICROSCOPY4.570
86FF4|1|5human Bact spliceosome core structureELECTRON MICROSCOPY3.470
96QDV|1|5Human post-catalytic P complex spliceosomeELECTRON MICROSCOPY3.375
106QX9|1|5Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).ELECTRON MICROSCOPY3.28104
116QW6|1|5Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.ELECTRON MICROSCOPY2.92104
126ID0|1|BCryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.998
136ID1|1|BCryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.8698
146ICZ|1|BCryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromELECTRON MICROSCOPY397
155XJC|1|BCryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromELECTRON MICROSCOPY3.684
165YZG|1|BThe Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionELECTRON MICROSCOPY4.184
175Z56|1|Bcryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.ELECTRON MICROSCOPY5.184
185Z57|1|BCryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromELECTRON MICROSCOPY6.584
195Z58|1|BCryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.ELECTRON MICROSCOPY4.984
203JCR|1|H3D structure determination of the human*U4/U6.U5* tri-snRNP complexELECTRON MICROSCOPY763
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