BGSU RNA Site //

Equivalence class NR_20.0_75422.3 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15UP6|1|R (rep)RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complexElectron microscopy3.742017-03-29
25UPA|1|RRNA (5'-R(*GP*CP*A*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')CryoEM structure of crosslinked E.coli RNA polymerase elongation complexElectron microscopy4.052017-04-05
36J9E|1|IRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticCryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7Electron microscopy3.412019-07-17
45UPC|1|RRNA (5'-R(*GP*CP*A*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')CryoEM structure of E.coli RNA polymerase elongation complexElectron microscopy4.382017-03-29
56C6T|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.52018-07-25
66J9F|1|IRNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticCryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7Electron microscopy3.952019-07-17
76C6U|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGElectron microscopy3.72018-07-25
86ALG|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia virus T7VirusesCryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complexElectron microscopy3.72017-08-16
96C6S|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.72018-07-25
106ALF|1|RRNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia virus T7VirusesCryoEM structure of crosslinked E.coli RNA polymerase elongation complexElectron microscopy4.12017-08-16
116ALH|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia virus T7VirusesCryoEM structure of E.coli RNA polymerase elongation complexElectron microscopy4.42017-08-16

Release history

Release3.833.843.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_75422.3NR_20.0_75422.23.83(9) 6C6T|1|R, 6C6S|1|R, 6ALH|1|R, 6ALG|1|R, 6ALF|1|R, 5UPC|1|R, 5UPA|1|R, 5UP6|1|R, 6C6U|1|R(2) 6J9E|1|I, 6J9F|1|I(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_75422.3NR_20.0_04731.13.98(4) 6J9E|1|I, 6ALH|1|R, 6J9F|1|I, 5UPC|1|R(7) 5UPA|1|R, 6ALG|1|R, 6C6T|1|R, 5UP6|1|R, 6ALF|1|R, 6C6S|1|R, 6C6U|1|R(0)
NR_20.0_75422.3NR_20.0_87089.13.98(7) 6C6S|1|R, 5UP6|1|R, 6ALG|1|R, 6C6T|1|R, 5UPA|1|R, 6ALF|1|R, 6C6U|1|R(4) 6J9F|1|I, 5UPC|1|R, 6ALH|1|R, 6J9E|1|I(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15UPA|1|RCryoEM structure of crosslinked E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.0517
26ALF|1|RCryoEM structure of crosslinked E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.112
36C6U|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGELECTRON MICROSCOPY3.710
46C6T|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.510
56C6S|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.710
65UP6|1|RCryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complexELECTRON MICROSCOPY3.7417
76ALG|1|RCryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complexELECTRON MICROSCOPY3.710
85UPC|1|RCryoEM structure of E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.3817
96ALH|1|RCryoEM structure of E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.410
106J9F|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7ELECTRON MICROSCOPY3.9512
116J9E|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7ELECTRON MICROSCOPY3.4112