#IFECompound(s)RNA source organismTitleMethodResolutionDate
14YBB|1|DA (rep)23S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
24V54|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
34V54|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
44WWW|1|RA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
54V7T|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
64V6C|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
74V52|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
84V7S|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
94V52|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
102J28|1|B23S RIBOSOMAL RNAEscherichia coliMODEL OF E. COLI SRP BOUND TO 70S RNCSELECTRON MICROSCOPY9.52006-11-08
114V4Q|1|DB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
124V7U|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
134V4Q|1|BB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
144V50|1|DB23S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
154V53|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542014-07-09
163J5L|1|A23S ribsomal RNA, 5'-R(*CP*CP*A)-3', 5'-R(*CP*(MA6))-3'Escherichia coliStructure of the E. coli 50S subunit with ErmBL nascent chainELECTRON MICROSCOPY6.62014-03-26
175GAE|1|A23S rRNA, tRNA CCA end (5'-R(P*CP*CP*A)-3')Escherichia coliRNC in complex with a translocating SecYEGELECTRON MICROSCOPY3.332016-01-27
184V9P|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
194V50|1|BB23S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
204V85|1|BA23S rRNAEscherichia coliCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22014-07-09
214V53|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542014-07-09
224V4H|1|DB23S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
234V9O|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
244V4H|1|BB23S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
254V55|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42014-07-09
264V57|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
274V7V|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
285GAG|1|A23S rRNA, tRNA CCAendEscherichia coliRNC in complex with SRP-SR in the closed stateELECTRON MICROSCOPY3.82016-01-27
294V64|1|BB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
304V57|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
314V64|1|DB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
324V5Y|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452014-07-09
334V5Y|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452014-07-09
344V55|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42014-07-09
354V89|1|BA23S rRNAEscherichia coliCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-RAY DIFFRACTION3.72014-07-09
364V6D|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812014-07-09
374V9D|1|CA23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
385GAF|1|A23S ribosomal RNA, tRNA CCAendEscherichia coliRNC in complex with SRPELECTRON MICROSCOPY4.32016-02-03
395GAD|1|A23S rRNA, tRNA CCAendEscherichia coliRNC-SRP-SR complex early stateELECTRON MICROSCOPY3.72016-01-27
405GAH|1|A23S rRNA, tRNA CCAendEscherichia coliRNC in complex with SRP with detached NG domainELECTRON MICROSCOPY3.82016-01-27
414U27|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
424U25|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
434U24|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
444V6E|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712014-07-09
454V9P|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
464V9P|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
474V9O|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
484WF1|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
494U1U|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
503J7Z|1|A23S rRNA, P-tRNA CCA-endEscherichia coliStructure of the E. coli 50S subunit with ErmCL nascent chainELECTRON MICROSCOPY3.92014-10-22
514V9O|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
524V56|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932014-07-09
534UY8|1|ARRNA-23S RIBOSOMAL RNAEscherichia coliMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82014-10-29
544U1V|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
554V56|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932014-07-09
564V6T|1|BA23S ribosomal RNAEscherichia coliStructure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingELECTRON MICROSCOPY8.32014-07-09
574V7B|1|BA23S ribosomal RNAEscherichia coliVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.82014-07-09
584V9P|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
594U20|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
604U26|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
614YBB|1|CA23S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
624WOI|1|BA23S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
633J9Y|1|A23S ribosomal RNAEscherichia coliCryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeELECTRON MICROSCOPY3.92015-04-15
645AFI|1|A23S ribosomal RNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
654V9D|1|DA23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
665AKA|1|B23S ribosomal RNAEscherichia coliEM structure of ribosome-SRP-FtsY complex in closed stateELECTRON MICROSCOPY5.72015-03-25
674U1U|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
684V6D|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812014-07-09
694WOI|1|CA23S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
704U20|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
714V6C|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
724V9C|1|DA23S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
734V5H|1|BB23S RIBOSOMAL RNAEscherichia coliE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.82014-07-09
744U1V|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
754V6V|1|BA23S ribosomal RNAEscherichia coliTetracycline resistance protein Tet(O) bound to the ribosomeELECTRON MICROSCOPY9.82014-07-09
764V69|1|BB23S ribosomal RNAEscherichia coliTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72014-07-09
774U25|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
784V6E|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712014-07-09
794V9O|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
804V6M|1|B823S RIBOSOMAL RNAEscherichia coliStructure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.12014-07-09
814U27|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
824V7S|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
834V7T|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
844V75|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY122014-07-09
854V7V|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
863JCE|1|A23 ribosomal RNAEscherichia coliStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22016-01-13
874V6Y|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY122014-07-09
884WF1|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
893J9Z|1|LA23S ribosomal RNAEscherichia coliActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
904V7A|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY92014-07-09
914V6Z|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY122014-07-09
924V72|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY132014-07-09
934V76|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY172014-07-09
944CSU|1|B23S RRNAEscherichia coliCryo-EM structures of the 50S ribosome subunit bound with ObgEELECTRON MICROSCOPY5.52014-06-04
954V73|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY152014-07-09
964WWW|1|YA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
974U24|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
984V70|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY172014-07-09
994V7I|1|A823S ribosomal RNAEscherichia coliRibosome-SecY complex.ELECTRON MICROSCOPY9.62014-07-09
1004U26|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
1014V9C|1|BA23S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
1024V74|1|BA23S ribosomal RNAEscherichia coli70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY172014-07-09
1034V77|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY172014-07-09
1044V78|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY202014-07-09
1054V6K|1|ABribosomal RNA 23SEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252014-07-09
1064V71|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY202014-07-09
1074V79|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY152014-07-09
1083BBX|1|B23S ribosomal RNAEscherichia coliThe Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102008-10-21
1093JBV|1|bRNA (2903-MER)Escherichia coliMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.322016-01-27
1104V7U|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
1114V6L|1|BB50S ribosomal RNA 23SEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22014-07-09
1123JA1|1|LA23S ribosomal RNAEscherichia coliActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
1133JCD|1|A23S ribosomal RNAEscherichia coliStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.72016-01-13
1144V6N|1|AB23S ribosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)ELECTRON MICROSCOPY12.12014-07-09
1154V7D|1|AA23S ribosomal RNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62014-07-09
1164V6O|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)ELECTRON MICROSCOPY14.72014-07-09
1173J8G|1|B23S rRNAEscherichia coliElectron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitELECTRON MICROSCOPY52014-11-26
1184V6R|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)ELECTRON MICROSCOPY11.52014-07-09
1194V6Q|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)ELECTRON MICROSCOPY11.52014-07-09
1204V6S|1|AB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)ELECTRON MICROSCOPY13.12014-07-09
1214V6P|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)ELECTRON MICROSCOPY13.52014-07-09
1224V7C|1|BA23S ribosomal RNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62014-07-09
1233JBU|1|b23S rRNAEscherichia coliMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.642016-01-27
1244V5B|1|AB23S RIBOSOMAL RNAEscherichia coliStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742014-07-09
1254V5B|1|CB23S RIBOSOMAL RNAEscherichia coliStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742014-07-09
1265ADY|1|B23S RRNAEscherichia coliCryo-EM structures of the 50S ribosome subunit bound with HflXELECTRON MICROSCOPY4.52015-10-14
1274V4V|1|B023S ribosomal RNAEscherichia coliStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152014-07-09
1284V4W|1|B023S ribosomal RNAEscherichia coliStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152014-07-09
1294V66|1|BB23S rRNAEscherichia coliStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92014-07-09
1304V65|1|BB23S rRNAEscherichia coliStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92014-07-09
1313DG0|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complexELECTRON MICROSCOPY10.82009-02-03
1323DG4|1|B23S RibosomaL RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complexELECTRON MICROSCOPY12.82009-02-03
1332RDO|1|B23S RIBOSOMAL RNAEscherichia coli50S subunit with EF-G(GDPNP) and RRF boundELECTRON MICROSCOPY9.12008-03-04
1343DG2|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complexELECTRON MICROSCOPY102009-02-03
1353DG5|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complexELECTRON MICROSCOPY15.52009-02-03
1364V47|1|A023S ribosomal RNAEscherichia coliReal space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeELECTRON MICROSCOPY12.32014-07-09
1374V48|1|A023S ribosomal RNAEscherichia coliReal space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52014-07-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13BBX|1|BThe Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102902
24V79|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY152903
34V71|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY202903
44V7A|1|BAE. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY92903
54V6Y|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY122903
64V6Z|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY122903
74V78|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY202903
84V76|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY172903
94V77|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY172903
104V74|1|BA70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY172903
114V73|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY152903
124V72|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY132903
134V70|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY172903
144V75|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY122903
153JBV|1|bMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.322903
164V6T|1|BAStructure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingELECTRON MICROSCOPY8.32903
174WOI|1|BA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
184V9C|1|DAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
194V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
204U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
214U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
224U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
234WF1|1|BACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
244U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
254U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
264U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
274U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
284V7C|1|BAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62897
294V7D|1|AAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62897
303JA1|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
314V6Q|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)ELECTRON MICROSCOPY11.52880
324V6R|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)ELECTRON MICROSCOPY11.52880
334V6P|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)ELECTRON MICROSCOPY13.52880
344V6O|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)ELECTRON MICROSCOPY14.72880
354V6N|1|ABStructural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)ELECTRON MICROSCOPY12.12880
364V6S|1|ABStructural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)ELECTRON MICROSCOPY13.12880
374V5H|1|BBE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.82903
384V6M|1|B8Structure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.12904
394V6V|1|BATetracycline resistance protein Tet(O) bound to the ribosomeELECTRON MICROSCOPY9.82881
404V5B|1|CBStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
412J28|1|BMODEL OF E. COLI SRP BOUND TO 70S RNCSELECTRON MICROSCOPY9.52841
424V4Q|1|DBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
434V4H|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
444V54|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
454V55|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
464V53|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
474V52|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
484V5Y|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
494V64|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
504V57|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
514V56|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
524V50|1|DBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
534V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
543J7Z|1|AStructure of the E. coli 50S subunit with ErmCL nascent chainELECTRON MICROSCOPY3.92854
554UY8|1|AMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82854
564V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
574V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
584V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
594V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
604V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
614V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
624V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
634WOI|1|CA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
644V9C|1|BAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
654V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
664U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
674U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
684U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
694WF1|1|DACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
704U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
714U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
724U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
734U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
744YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
754V7U|1|DACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12841
764WWW|1|YACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12841
774V7S|1|DACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252841
784V7V|1|DACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292841
794V7T|1|DACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192841
804V6C|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192841
814V6E|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712841
824V6D|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812841
834V50|1|BBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
844V56|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
854V57|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
864V5Y|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
874V52|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
884V53|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
894V55|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
904V64|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
914V4H|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
924V4Q|1|BBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
934V54|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
944V5B|1|ABStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
954YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
964V6E|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712854
974V6D|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812854
983J5L|1|AStructure of the E. coli 50S subunit with ErmBL nascent chainELECTRON MICROSCOPY6.62853
994V7U|1|BACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12854
1004V7T|1|BACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192854
1014V6C|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192854
1024WWW|1|RACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12854
1034V7S|1|BACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252854
1044V7V|1|BACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292854
1054V89|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-RAY DIFFRACTION3.72853
1064V85|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22853
1075GAD|1|ARNC-SRP-SR complex early stateELECTRON MICROSCOPY3.72883
1085GAF|1|ARNC in complex with SRPELECTRON MICROSCOPY4.32883
1095GAH|1|ARNC in complex with SRP with detached NG domainELECTRON MICROSCOPY3.82883
1105GAG|1|ARNC in complex with SRP-SR in the closed stateELECTRON MICROSCOPY3.82883
1115GAE|1|ARNC in complex with a translocating SecYEGELECTRON MICROSCOPY3.332884
1124V7B|1|BAVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.82854
1133J9Y|1|ACryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeELECTRON MICROSCOPY3.92876
1145AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
1153J9Z|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
1164V69|1|BBTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72903
1173JCE|1|AStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22903
1183JCD|1|AStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.72903
1195AKA|1|BEM structure of ribosome-SRP-FtsY complex in closed stateELECTRON MICROSCOPY5.72841
1203JBU|1|bMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.642903
1214V7I|1|A8Ribosome-SecY complex.ELECTRON MICROSCOPY9.62903
1225ADY|1|BCryo-EM structures of the 50S ribosome subunit bound with HflXELECTRON MICROSCOPY4.52903
1234V6K|1|ABStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252880
1244V6L|1|BBStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22880
1254CSU|1|BCryo-EM structures of the 50S ribosome subunit bound with ObgEELECTRON MICROSCOPY5.52903
1264V66|1|BBStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92903
1274V65|1|BBStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92903
1284V4V|1|B0Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152740
1294V4W|1|B0Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152740
1303J8G|1|BElectron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitELECTRON MICROSCOPY52874
1313DG4|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complexELECTRON MICROSCOPY12.82841
1322RDO|1|B50S subunit with EF-G(GDPNP) and RRF boundELECTRON MICROSCOPY9.12841
1333DG5|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complexELECTRON MICROSCOPY15.52841
1344V47|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeELECTRON MICROSCOPY12.32536
1353DG0|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complexELECTRON MICROSCOPY10.82841
1363DG2|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complexELECTRON MICROSCOPY102841
1374V48|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52536