#IFECompound(s)RNA source organismTitleMethodResolutionDate
15TBW|1|1+ 5TBW|1|4 (rep)25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
25TBW|1|AR+ 5TBW|1|AT25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A5+ 4V88|1|A825S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
44V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
55I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
65I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
75MEI|1|AR+ 5MEI|1|AT25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
85MEI|1|1+ 5MEI|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
96HHQ|1|AR+ 6HHQ|1|AT25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
106HHQ|1|1+ 6HHQ|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
115OBM|1|5+ 5OBM|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
125OBM|1|1+ 5OBM|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
135LYB|1|5+ 5LYB|1|825S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
145NDV|1|1+ 5NDV|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
155ON6|1|1+ 5ON6|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
165LYB|1|1+ 5LYB|1|425S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
175ON6|1|AR+ 5ON6|1|AT25S ribosomal RNA, 5.8S ribosomal RNACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
185NDV|1|5+ 5NDV|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
195NDW|1|1+ 5NDW|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
205NDW|1|5+ 5NDW|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
215NDG|1|5+ 5NDG|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
225NDG|1|1+ 5NDG|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.72017-12-13
235TGM|1|1+ 5TGM|1|425S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
245TGM|1|5+ 5TGM|1|825S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
254V7R|1|B1+ 4V7R|1|B325S ribosomal RNA, 5.8S ribosomal RNAYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
264V7R|1|D1+ 4V7R|1|D325S ribosomal RNA, 5.8S ribosomal RNAYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
275DAT|1|5+ 5DAT|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
285DGV|1|5+ 5DGV|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
295DAT|1|1+ 5DAT|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
305DGV|1|1+ 5DGV|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
315DGE|1|5+ 5DGE|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
325TGA|1|5+ 5TGA|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
335DGF|1|5+ 5DGF|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
345TGA|1|1+ 5TGA|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
355DGF|1|1+ 5DGF|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
365DGE|1|1+ 5DGE|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
375DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
385DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
396T4Q|1|C1+ 6T4Q|1|C325S rRNA, 5.8S rRNAStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
406WOO|1|5+ 6WOO|1|825S ribosomal RNA, 5.8S ribosomal rRNACryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
416TB3|1|BQ+ 6TB3|1|BS25S rRNA, 5.8S rRNAyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
426SNT|1|1+ 6SNT|1|3Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNAYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
437AZY|1|E+ 7AZY|1|G25S ribosomal RNA, 5.8S ribosomal RNAContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8772021-05-19
444U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
454U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
464U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
474U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
485T62|1|A+ 5T62|1|C25S Ribosomal RNA, 5.8S Ribosomal RNANmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.12017-02-08
494U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
504U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
514U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
524U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
534U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
546YLG|1|1+ 6YLG|1|225S rRNA, 5.8S rRNARix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY32020-07-29
554U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
564U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
574U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
586Q8Y|1|BQ+ 6Q8Y|1|BS25S ribosomal RNA, 5.8S ribosomal RNACryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.12019-03-13
597OHQ|1|1+ 7OHQ|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03
605M1J|1|14+ 5M1J|1|4425S ribosomal RNA, 5.8S ribosomal RNANonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
616T7T|1|C1+ 6T7T|1|C325S rRNA, 5.8S rRNAStructure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.12019-12-25
627B7D|1|LA+ 7B7D|1|LC25S rRNA, 5.8S rRNAYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.32021-03-10
634U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
644U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
656QIK|1|A+ 6QIK|1|y25S ribosomal RNA, 5.8S ribosomal RNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.12019-06-26
666YLH|1|1+ 6YLH|1|225S rRNA, 5.8S rRNARix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.12020-07-29
676XIR|1|1+ 6XIR|1|435S ribosomal RNA, 5.8S ribosomal RNACryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
686TNU|1|BQ+ 6TNU|1|BS25S rRNA, 5.8S rRNAYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
694U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
704U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
714U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
724U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
736RZZ|1|A+ 6RZZ|1|y25S ribosomal RNA, 5.8S ribosomal RNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.22019-06-26
746T7I|1|C1+ 6T7I|1|C325S ribosomal RNA, 5.8S ribosomal RNAStructure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.22019-12-25
754U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
764U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
777BTB|1|1+ 7BTB|1|2RDN25-1 rRNA, RDN5.8-1 rRNACryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.222020-10-28
784U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
797BT6|1|1+ 7BT6|1|2RDN25-1 rRNA, RDN5.8-1 rRNACryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.122020-10-28
804U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
816R87|1|1+ 6R87|1|425S rRNA, 5.8S rRNAYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.42019-06-26
824U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
833JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNACryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
846S47|1|AA+ 6S47|1|AC28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.282019-07-24
854U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
864U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
874U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
884U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
894U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
905H4P|1|1+ 5H4P|1|425S ribosomal RNA, 5.8S ribosomal RNAStructural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.072017-01-25
916M62|1|1+ 6M62|1|2RDN25-1 rRNA, RDN58-1 rRNACryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.22020-08-26
926R86|1|1+ 6R86|1|425S ribosomal RNA, 5.8S ribosomal RNAYeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.42019-07-31
936Z6K|1|C1+ 6Z6K|1|C325S rRNA, 5.8S rRNACryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.42020-07-29
946Z6J|1|C1+ 6Z6J|1|C325S rRNA, 5.8S rRNACryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.42020-07-29
955JUP|1|B+ 5JUP|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
966HD7|1|1+ 6HD7|1|4Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.42018-12-19
976RI5|1|A+ 6RI5|1|y25S RNA, 5.8S rRNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.32019-06-26
986QT0|1|A+ 6QT0|1|y25S rRNA, 5.8S rRNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.42019-06-26
996N8M|1|A+ 6N8M|1|CSaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S RNACryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1006N8O|1|A+ 6N8O|1|CSaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1014U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
1027OF1|1|1+ 7OF1|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03
1034U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
1046R84|1|1+ 6R84|1|425S rRNA, 5.8S rRNAYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.62019-06-26
1056SV4|1|YQ+ 6SV4|1|YS25S rRNA, 5.8S rRNAThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1067OH3|1|1+ 7OH3|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.42021-11-03
1076SV4|1|BQ+ 6SV4|1|BS25S rRNA, 5.8S rRNAThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1086SV4|1|ZQ+ 6SV4|1|ZS25S rRNA, 5.8S rRNAThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1096N8L|1|1+ 6N8L|1|3Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.62019-03-13
1106N8K|1|1+ 6N8K|1|3Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.62019-03-13
1115APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
1126QTZ|1|A+ 6QTZ|1|y25S rRNA, 5.8S rRNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.52019-06-26
1136OIG|1|5+ 6OIG|1|825S ribosomal RNA, 5.8S ribosomal RNASubunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.82020-09-30
1146N8J|1|1+ 6N8J|1|3Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1154U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1164U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1176N8N|1|A+ 6N8N|1|CSaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNACryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.82019-03-13
1187NRC|1|LA+ 7NRC|1|LC25S rRNA (3184-MER), 5.8S rRNA (158-MER)Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.92021-05-05
1195MC6|1|BQ+ 5MC6|1|BS25S ribosomal RNA, 5.8S ribosomal RNACryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
1206GQB|1|1+ 6GQB|1|4Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S ribosomal RNACryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
1215JUU|1|B+ 5JUU|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1226T83|1|1b+ 6T83|1|3b25S rRNA, 5.8S rRNAStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1235JUT|1|B+ 5JUT|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1245JUO|1|B+ 5JUO|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
1256T83|1|Aa+ 6T83|1|Ca25S rRNA, 5.8S rRNAStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY42019-12-25
1266GQV|1|1+ 6GQV|1|425S ribosomal RNA, 5.8S ribosomal RNACryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
1276S05|1|A+ 6S05|1|y25S ribosomal RNA, 5.8S ribosomal RNACryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.92019-06-26
1285JUS|1|B+ 5JUS|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.22016-10-05
1296FT6|1|1+ 6FT6|1|225S ribosomal RNA, 7S ribosomal RNAStructure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.92018-03-28
1306XIQ|1|1+ 6XIQ|1|435S ribosomal RNA, 5.8S ribosomal RNACryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.22020-08-26
1316ELZ|1|1+ 6ELZ|1|225S ribosomal RNA, 5.8S ribosomal RNAState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32017-12-27
1325T6R|1|A+ 5T6R|1|C25S Ribosomal RNA, 5.8S Ribosomal RNANmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.22017-02-08
1335APN|1|5+ 5APN|1|825S rRNA, 5.8S rRNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.912015-12-16
1344U4O|1|5+ 4U4O|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1354U4O|1|1+ 4U4O|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
1367NRD|1|LA+ 7NRD|1|LC25S rRNA (3184-MER), 5.8S rRNA (158-MER)Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY4.362021-04-14
1376YLY|1|1+ 6YLY|1|325S rRNA, 5.8S rRNApre-60S State NE2 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.82020-07-29
1384V8Y|1|B5+ 4V8Y|1|B825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNACryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
1396GQ1|1|1+ 6GQ1|1|4Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5S ribosomal RNACryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.42018-07-11
1406YLX|1|1+ 6YLX|1|225S rRNA, 5.8S rRNApre-60S State NE1 (TAP-Flag-Nop53)ELECTRON MICROSCOPY3.92020-07-29
1415GAK|1|1+ 5GAK|1|425S rRNA, 5.8S rRNAYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.882016-02-24
1427OHV|1|1+ 7OHV|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population CELECTRON MICROSCOPY3.92021-11-03
1437OHX|1|1+ 7OHX|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.32021-11-03
1446EM5|1|125S ribosomal RNASaccharomyces cerevisiaeState D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.32017-12-27
1456EM1|1|1+ 6EM1|1|225S ribosomal RNA, 5.8S ribosomal RNAState C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.62017-12-27
1467OHU|1|1+ 7OHU|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population BELECTRON MICROSCOPY3.72021-11-03
1476EM3|1|125S ribosomal RNASaccharomyces cerevisiaeState A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.22017-12-27
1486I7O|1|BQ25S ribosomal RNASaccharomyces cerevisiaeThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.32019-01-16
1496I7O|1|YQ25S ribosomal RNASaccharomyces cerevisiaeThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.32019-01-16
1507OHY|1|1+ 7OHY|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population BELECTRON MICROSCOPY3.92021-11-03
1517OHW|1|1+ 7OHW|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.52021-11-03
1527OHP|1|1+ 7OHP|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population AELECTRON MICROSCOPY3.92021-11-03
1536C0F|1|1+ 6C0F|1|2Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA, 5.8S rRNAYeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.72018-03-14
1546EM4|1|125S ribosomal RNASaccharomyces cerevisiaeState B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.12017-12-27
1553J6Y|1|2S+ 3J6Y|1|8S25S ribosomal RNA, 5.8S ribosomal RNAS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
1563J6X|1|2S+ 3J6X|1|8S25S ribosomal RNA, 5.8S ribosomal RNAS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
1577OHS|1|1+ 7OHS|1|225S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particle population F from S. cerevisiaeELECTRON MICROSCOPY4.382021-11-03
1583J77|1|2S+ 3J77|1|8S25S ribosomal RNA, 5.8S ribosomal RNAStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
1593J78|1|2S+ 3J78|1|8S25S ribosomal RNA, 5.8S ribosomal RNAStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
1607OHT|1|125S rRNA, 5.8S rRNANog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population AELECTRON MICROSCOPY4.72021-11-03
1614V8Z|1|B5+ 4V8Z|1|B825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNACryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
1626CB1|1|1+ 6CB1|1|235S pre-ribosomal RNA miscRNA, 5.8S rRNAYeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.62018-03-14
1635Z3G|1|A+ 5Z3G|1|B25S rRNA, 5.8S rRNACryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.652018-04-11
1644V8T|1|5+ 4V8T|1|825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNACryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.12014-07-09
1654V7F|1|125S ribosomal RNASaccharomyces cerevisiaeArx1 pre-60S particle.ELECTRON MICROSCOPY8.72014-07-09
1664V6I|1|DA+ 4V6I|1|DB25S rRNA, 5.8S rRNALocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09
1675JCS|1|x25S ribosomal RNASaccharomyces cerevisiaeCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52016-11-16
1685FL8|1|x25S ribosomal RNASaccharomyces cerevisiaeCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52015-12-02

Release history

Release3.203
Date2021-11-03

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#Class_IFEPDBIDAssemblyLSU_23SLSU_5SmRNAtRNA/stRNA_OccupancyA_tRNA_anticodonProtein_factors