Equivalence class NR_20.0_90633.10 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
| 2 | 5HL7|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2016-12-21 |
| 3 | 4WFA|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
| 4 | 5HKV|1|X | Large subunit ribosomal RNA | 23s ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2017-05-03 |
| 5 | 4WCE|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2015-10-21 |
| 6 | 4WFB|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
| 7 | 5NRG|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
| 8 | 5NGM|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 9 | 5T7V|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 10 | 5ND8|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 11 | 5ND9|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 12 | 5LI0|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 13 | 5TCU|1|B | Large subunit ribosomal RNA | 23S RRNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 14 | 5NG8|1|BA | 23S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 | ||||
| 15 | 6FXC|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 16 | 5NG8|1|AA | 23S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 | ||||
| 17 | 6FXC|1|AA | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
Release history
| Release | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_90633.10 | NR_20.0_90633.11 | 3.48 | (17) 4WF9|1|X, 4WCE|1|X, 6FXC|1|BA, 6FXC|1|AA, 5TCU|1|B, 5T7V|1|B, 5NRG|1|X, 5NGM|1|AA, 5NG8|1|BA, 5NG8|1|AA, 5ND9|1|A, 5ND8|1|A, 5LI0|1|A, 5HL7|1|X, 5HKV|1|X, 4WFB|1|X, 4WFA|1|X | (0) | (1) 6HMA|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5NG8|1|AA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 2 | 6FXC|1|AA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 3 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 |
| 4 | 6FXC|1|BA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 5 | 5NG8|1|BA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 6 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2711 |
| 7 | 5HKV|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2695 |
| 8 | 5HL7|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2705 |
| 9 | 4WCE|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2708 |
| 10 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 |
| 11 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 |
| 12 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 |
| 13 | 5LI0|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2914 |
| 14 | 5ND8|1|A | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2912 |
| 15 | 5ND9|1|A | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2914 |
| 16 | 5TCU|1|B | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2755 |
| 17 | 5T7V|1|B | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2768 |