Equivalence class NR_20.0_90633.20 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
| 2 | 5HL7|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2016-12-21 |
| 3 | 4WFA|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
| 4 | 5HKV|1|X | Large subunit ribosomal RNA | 23s ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2017-05-03 |
| 5 | 4WCE|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2015-10-21 |
| 6 | 4WFB|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
| 7 | 5NRG|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
| 8 | 6S0Z|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.3 | 2019-08-21 |
| 9 | 7ASM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation at 37C | Electron microscopy | 2.48 | 2021-11-17 |
| 10 | 6HMA|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | Electron microscopy | 2.65 | 2018-11-14 |
| 11 | 6S0X|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
| 12 | 5NGM|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 13 | 7NHL|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 14 | 7ASP|1|Y | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S after 50 minutes incubation at 37C | Electron microscopy | 2.86 | 2021-11-17 |
| 15 | 7NHM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.1 | 2021-05-05 |
| 16 | 7P48|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus ribosome in complex with Sal(B) | Electron microscopy | 2.9 | 2022-02-02 |
| 17 | 7ASN|1|A | Large subunit ribosomal RNA | 23S | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation a 37C | Electron microscopy | 2.73 | 2021-11-17 |
| 18 | 6YEF|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | Electron microscopy | 3.2 | 2021-01-27 |
| 19 | 6WQN|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | Electron microscopy | 2.9 | 2020-06-03 |
| 20 | 7ASO|1|Y | Large subunit ribosomal RNA | 23S | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S after 30 minutes incubation at 37C | Electron microscopy | 3.11 | 2021-11-17 |
| 21 | 6WQQ|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | Electron microscopy | 3.1 | 2020-06-03 |
| 22 | 6WRU|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | Electron microscopy | 3.1 | 2020-06-03 |
| 23 | 6WRS|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | Electron microscopy | 3.2 | 2020-06-03 |
| 24 | 6DDG|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | Electron microscopy | 3.1 | 2019-03-20 |
| 25 | 6DDD|1|1 | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | Electron microscopy | 3.1 | 2019-03-20 |
| 26 | 6S12|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.2 | 2019-08-21 |
| 27 | 6SJ6|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | Electron microscopy | 3.23 | 2020-04-08 |
| 28 | 5T7V|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 29 | 5ND8|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 30 | 5ND9|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 31 | 5LI0|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 32 | 5TCU|1|B | Large subunit ribosomal RNA | 23S RRNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 33 | 6S13|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.58 | 2019-08-21 |
| 34 | 6FXC|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 35 | 6FXC|1|AA | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
Release history
| Release | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_90633.20 | NR_20.0_90633.19 | 3.216 | (34) 4WCE|1|X, 4WF9|1|X, 4WFA|1|X, 4WFB|1|X, 5HKV|1|X, 5HL7|1|X, 5LI0|1|A, 5ND8|1|A, 5ND9|1|A, 5NGM|1|AA, 5NRG|1|X, 5T7V|1|B, 5TCU|1|B, 6DDD|1|1, 6DDG|1|1, 6FXC|1|AA, 6FXC|1|BA, 6HMA|1|A, 6S0X|1|A, 6S0Z|1|A, 6S12|1|A, 6S13|1|A, 6SJ6|1|A, 6WQN|1|1, 6WQQ|1|1, 6WRS|1|1, 6WRU|1|1, 6YEF|1|A, 7ASM|1|A, 7ASN|1|A, 7ASO|1|Y, 7ASP|1|Y, 7NHL|1|A, 7NHM|1|A | (1) 7P48|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_90633.20 | NR_20.0_90633.21 | 3.238 | (35) 4WCE|1|X, 4WF9|1|X, 4WFA|1|X, 4WFB|1|X, 5HKV|1|X, 5HL7|1|X, 5LI0|1|A, 5ND8|1|A, 5ND9|1|A, 5NGM|1|AA, 5NRG|1|X, 5T7V|1|B, 5TCU|1|B, 6DDD|1|1, 6DDG|1|1, 6FXC|1|AA, 6FXC|1|BA, 6HMA|1|A, 6S0X|1|A, 6S0Z|1|A, 6S12|1|A, 6S13|1|A, 6SJ6|1|A, 6WQN|1|1, 6WQQ|1|1, 6WRS|1|1, 6WRU|1|1, 6YEF|1|A, 7ASM|1|A, 7ASN|1|A, 7ASO|1|Y, 7ASP|1|Y, 7NHL|1|A, 7NHM|1|A, 7P48|1|A | (0) | (2) 7TTU|1|1, 7TTW|1|1 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7ASP|1|Y | Staphylococcus aureus 70S after 50 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.86 | 2723 |
| 2 | 6HMA|1|A | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2831 |
| 3 | 7ASM|1|A | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 2831 |
| 4 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 |
| 5 | 6FXC|1|AA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 6 | 6FXC|1|BA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 |
| 7 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2711 |
| 8 | 5HKV|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2695 |
| 9 | 5HL7|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2705 |
| 10 | 4WCE|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2708 |
| 11 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 |
| 12 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 |
| 13 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 |
| 14 | 6DDG|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 15 | 6DDD|1|1 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 2646 |
| 16 | 5ND9|1|A | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2914 |
| 17 | 5ND8|1|A | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2912 |
| 18 | 5LI0|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2914 |
| 19 | 7NHM|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2824 |
| 20 | 7NHL|1|A | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2914 |
| 21 | 7P48|1|A | Staphylococcus aureus ribosome in complex with Sal(B) | ELECTRON MICROSCOPY | 2.9 | 2661 |
| 22 | 6YEF|1|A | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2875 |
| 23 | 5TCU|1|B | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2755 |
| 24 | 5T7V|1|B | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2768 |
| 25 | 6WRU|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid | ELECTRON MICROSCOPY | 3.1 | 2665 |
| 26 | 6WQQ|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid | ELECTRON MICROSCOPY | 3.1 | 2698 |
| 27 | 6WRS|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid | ELECTRON MICROSCOPY | 3.2 | 2698 |
| 28 | 6WQN|1|1 | Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid | ELECTRON MICROSCOPY | 2.9 | 2687 |
| 29 | 7ASO|1|Y | Staphylococcus aureus 70S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 3.11 | 2720 |
| 30 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 |
| 31 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 |
| 32 | 6S12|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2905 |
| 33 | 6S13|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 2905 |
| 34 | 6SJ6|1|A | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2585 |
| 35 | 7ASN|1|A | Staphylococcus aureus 50S after 30 minutes incubation a 37C | ELECTRON MICROSCOPY | 2.73 | 2739 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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