Equivalence class NR_20.0_90759.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5XJC|1|H+ 5XJC|1|F (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Homo sapiens small nuclear RNA (U2) gene, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 2 | 5YZG|1|H+ 5YZG|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 3 | 5Z58|1|H+ 5Z58|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 4 | 5MQF|1|2+ 5MQF|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Human gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 5 | 5Z56|1|H+ 5Z56|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 6 | 5Z57|1|H+ 5Z57|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
Release history
| Release | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_90759.1 | NR_20.0_09224.2 | 3.40 | (3) 5YZG|1|H+5YZG|1|F, 5XJC|1|H+5XJC|1|F, 5MQF|1|2+5MQF|1|6 | (3) 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_90759.1 | NR_20.0_90759.2 | 3.62 | (6) 5XJC|1|H+5XJC|1|F, 5MQF|1|2+5MQF|1|6, 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 5YZG|1|H+5YZG|1|F | (0) | (1) 6QDV|1|2+6QDV|1|6 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5YZG|1|H+5YZG|1|F | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 139 |
| 2 | 5Z57|1|H+5Z57|1|F | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 136 |
| 3 | 5Z58|1|H+5Z58|1|F | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 136 |
| 4 | 5Z56|1|H+5Z56|1|F | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 136 |
| 5 | 5MQF|1|2+5MQF|1|6 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 140 |
| 6 | 5XJC|1|H+5XJC|1|F | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 140 |