NR_20.0_94729.4

Members (32)
History
Heat map

#	IFE	Molecule	Organism	Source	Title	Method	Å	Date
1	4NLF\|1\|A (rep)	23S ribosomal RNA Sarcin Ricin Loop			2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-ray diffraction	1	2014-11-19
2	5D99\|1\|A	RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA	Enterobacteria phage L1	Viruses	3DW4 redetermined by direct methods starting from random phase angles	X-ray diffraction	0.97	2016-04-13
3	1Q9A\|1\|A	Sarcin/ricin 23S rRNA			Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-ray diffraction	1.04	2003-11-25
4	4NMG\|1\|A	23S ribosomal RNA Sarcin Ricin Loop			2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-ray diffraction	1.01	2014-11-19
5	6ZYB\|1\|A	Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification	synthetic construct	Synthetic	Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification	X-ray diffraction	0.9	2020-12-16
6	3DW4\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-ray diffraction	0.97	2009-03-24
7	3DW6\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-ray diffraction	1	2009-03-24
8	4Y27\|1\|A	27-mer 23S Sarcin-Ricil Loop	Escherichia coli	Bacteria	E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-ray diffraction	1	2015-11-18
9	3DVZ\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-ray diffraction	1	2009-03-24
10	4NXH\|1\|A	23S ribosomal RNA Sarcin Ricin Loop	Escherichia coli	Bacteria	2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-ray diffraction	1.16	2014-12-10
11	5NQI\|1\|A	E.Coli 27-mer SRL RNA	Escherichia coli	Bacteria	E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification	X-ray diffraction	0.85	2017-07-26
12	3S7C\|1\|A	Ecoli 23 S rRNA Sarcin Ricin loop			Crystal structure of a 2'-azido-uridine-modified RNA	X-ray diffraction	1.1	2012-04-11
13	5MRX\|1\|A	RNA (27-MER)	Escherichia coli	Bacteria	27-nt SRL with a 5-hydroxymethyl cytidine modification	X-ray diffraction	0.85	2018-01-17
14	3DW5\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-ray diffraction	0.96	2009-03-24
15	3DW7\|1\|A	Sarcin/Ricin Domain from E. Coli 23 S rRNA			Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-ray diffraction	1	2009-03-24
16	483D\|1\|A	SARCIN/RICIN RRNA DOMAIN			CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.11	1999-10-08
17	3S8U\|1\|A	Ecoli 23 S rRNA Sarcin Ricin loop	Escherichia coli	Bacteria	Crystal structure of a 2-azido-adenine-modified RNA	X-ray diffraction	1.2	2012-04-11
18	1MSY\|1\|A	SARCIN/RICIN DOMAIN FROM 23 S RRNA			GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-ray diffraction	1.41	2003-02-25
19	480D\|1\|A	SARCIN/RICIN DOMAIN FROM 23 S RRNA			CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.5	1999-10-08
20	1JBR\|1\|D	31-mer SRD RNA analog			Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor	X-ray diffraction	2.15	2001-10-26
21	1JBT\|1\|C	29-MER SARCIN/RICIN DOMAIN RNA ANALOG			CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG	X-ray diffraction	2.7	2001-10-26
22	6ZXZ\|1\|B	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	synthetic construct	Synthetic	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-ray diffraction	2.44	2020-12-16
23	1JBT\|1\|D	29-MER SARCIN/RICIN DOMAIN RNA ANALOG			CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG	X-ray diffraction	2.7	2001-10-26
24	1JBS\|1\|D	29-mer sarcin/ricin domain RNA analog			Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog	X-ray diffraction	1.97	2001-10-26
25	6ZXZ\|1\|A	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	synthetic construct	Synthetic	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-ray diffraction	2.44	2020-12-16
26	6ZXZ\|1\|C	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	synthetic construct	Synthetic	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-ray diffraction	2.44	2020-12-16
27	1JBS\|1\|C	29-mer sarcin/ricin domain RNA analog			Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog	X-ray diffraction	1.97	2001-10-26
28	3EP2\|1\|D	Fragment H95 of the 23S rRNA	Escherichia coli	Bacteria	Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM	Electron microscopy	9	2008-12-16
29	3EQ3\|1\|D	Fragment H95 of the 23S rRNA	Escherichia coli	Bacteria	Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM	Electron microscopy	9	2008-12-16
30	3DEG\|1\|I	50S RNA helix 95	Escherichia coli	Bacteria	Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP	Electron microscopy	10.9	2008-08-19
31	1EG0\|1\|M	HELIX 95 OF 23S RRNA	Escherichia coli	Bacteria	FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME	Electron microscopy	11.5	2000-03-06
32	3EQ4\|1\|D	Fragment H95 of the 23S rRNA	Escherichia coli	Bacteria	Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM	Electron microscopy	12	2008-12-16

Release history

Release	3.157
Date	2020-12-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_20.0_94729.4	NR_20.0_94729.3	3.157	(28) 3DVZ\|1\|A, 3S7C\|1\|A, 1JBR\|1\|D, 5D99\|1\|A, 3DEG\|1\|I, 3EQ4\|1\|D, 1EG0\|1\|M, 4Y27\|1\|A, 1Q9A\|1\|A, 3EQ3\|1\|D, 4NXH\|1\|A, 3EP2\|1\|D, 4NMG\|1\|A, 1MSY\|1\|A, 3DW7\|1\|A, 4NLF\|1\|A, 1JBT\|1\|D, 3DW6\|1\|A, 483D\|1\|A, 1JBT\|1\|C, 3DW5\|1\|A, 480D\|1\|A, 1JBS\|1\|D, 5NQI\|1\|A, 3DW4\|1\|A, 3S8U\|1\|A, 1JBS\|1\|C, 5MRX\|1\|A	(4) 6ZXZ\|1\|C, 6ZXZ\|1\|B, 6ZXZ\|1\|A, 6ZYB\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_20.0_94729.4	NR_20.0_94729.5	3.158	(32) 3DW6\|1\|A, 3S8U\|1\|A, 4NXH\|1\|A, 6ZXZ\|1\|A, 1JBS\|1\|C, 1Q9A\|1\|A, 3S7C\|1\|A, 1JBR\|1\|D, 4NMG\|1\|A, 1MSY\|1\|A, 3DW5\|1\|A, 5NQI\|1\|A, 3EQ4\|1\|D, 1EG0\|1\|M, 4NLF\|1\|A, 1JBT\|1\|D, 3DW4\|1\|A, 5MRX\|1\|A, 3EQ3\|1\|D, 6ZYB\|1\|A, 483D\|1\|A, 1JBT\|1\|C, 5D99\|1\|A, 3DVZ\|1\|A, 3EP2\|1\|D, 6ZXZ\|1\|C, 480D\|1\|A, 1JBS\|1\|D, 4Y27\|1\|A, 3DEG\|1\|I, 3DW7\|1\|A, 6ZXZ\|1\|B	(0)	(3) 7JJF\|1\|A, 7JJD\|1\|A, 7JJE\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	1JBS\|1\|C	Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog	X-RAY DIFFRACTION	1.97	17
2	1JBS\|1\|D	Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog	X-RAY DIFFRACTION	1.97	17
3	1JBT\|1\|C	CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG	X-RAY DIFFRACTION	2.7	29
4	1JBT\|1\|D	CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG	X-RAY DIFFRACTION	2.7	29
5	1JBR\|1\|D	Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor	X-RAY DIFFRACTION	2.15	31
6	1MSY\|1\|A	GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-RAY DIFFRACTION	1.41	31
7	1Q9A\|1\|A	Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-RAY DIFFRACTION	1.04	38
8	483D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.11	39
9	5MRX\|1\|A	27-nt SRL with a 5-hydroxymethyl cytidine modification	X-RAY DIFFRACTION	0.85	34
10	5NQI\|1\|A	E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification	X-RAY DIFFRACTION	0.85	34
11	4NXH\|1\|A	2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-RAY DIFFRACTION	1.16	32
12	6ZYB\|1\|A	Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification	X-RAY DIFFRACTION	0.9	30
13	3DVZ\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-RAY DIFFRACTION	1	35
14	3S8U\|1\|A	Crystal structure of a 2-azido-adenine-modified RNA	X-RAY DIFFRACTION	1.2	34
15	3DW5\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-RAY DIFFRACTION	0.96	32
16	3DW7\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-RAY DIFFRACTION	1	37
17	4NMG\|1\|A	2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-RAY DIFFRACTION	1.01	36
18	3S7C\|1\|A	Crystal structure of a 2'-azido-uridine-modified RNA	X-RAY DIFFRACTION	1.1	32
19	3DW6\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-RAY DIFFRACTION	1	28
20	3DW4\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-RAY DIFFRACTION	0.97	26
21	5D99\|1\|A	3DW4 redetermined by direct methods starting from random phase angles	X-RAY DIFFRACTION	0.97	30
22	4Y27\|1\|A	E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-RAY DIFFRACTION	1	25
23	480D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.5	27
24	4NLF\|1\|A	2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-RAY DIFFRACTION	1	28
25	6ZXZ\|1\|A	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-RAY DIFFRACTION	2.44	25
26	6ZXZ\|1\|C	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-RAY DIFFRACTION	2.44	25
27	6ZXZ\|1\|B	Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification	X-RAY DIFFRACTION	2.44	25
28	3DEG\|1\|I	Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP	ELECTRON MICROSCOPY	10.9	29
29	3EQ4\|1\|D	Model of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM	ELECTRON MICROSCOPY	12	28
30	3EQ3\|1\|D	Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM	ELECTRON MICROSCOPY	9	28
31	1EG0\|1\|M	FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME	ELECTRON MICROSCOPY	11.5	26
32	3EP2\|1\|D	Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM	ELECTRON MICROSCOPY	9	28

Equivalence class NR_20.0_94729.4 Obsolete

Release history

Parents

Children