#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15IPL|1|3 (rep)nascent RNA 4-mersynthetic constructSigmaS-transcription initiation complex with 4-nt nascent RNAX-ray diffraction3.62016-03-30
25IPM|1|3nascent RNA 4-mersynthetic constructSigmaS-transcription initiation complex with 4-nt nascent RNAX-ray diffraction4.22016-03-30
35IPN|1|3Nascent RNA 4-mersynthetic constructSigmaS-transcription initiation complex with 4-nt nascent RNAX-ray diffraction4.612016-03-30
44YLO|1|3RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-ray diffraction62015-04-22
54YLN|1|6RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-ray diffraction5.52015-04-22
64YLO|1|6RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-ray diffraction62015-04-22
74YLN|1|3RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-ray diffraction5.52015-04-22
84YLN|1|9RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-ray diffraction5.52015-04-22
94YLO|1|9RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3')synthetic constructE. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-ray diffraction62015-04-22

Release history

Release2.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_95963.2NR_all_95963.12.69(6) 4YLN|1|3, 4YLN|1|6, 4YLN|1|9, 4YLO|1|3, 4YLO|1|6, 4YLO|1|9(3) 5IPL|1|3, 5IPM|1|3, 5IPN|1|3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_95963.2NR_20.0_12718.13.98(1) 4YLO|1|9(8) 4YLN|1|3, 4YLN|1|6, 4YLN|1|9, 4YLO|1|3, 4YLO|1|6, 5IPL|1|3, 5IPM|1|3, 5IPN|1|3(0)
NR_20.0_95963.2NR_20.0_95963.33.98(8) 4YLN|1|3, 4YLN|1|6, 4YLN|1|9, 4YLO|1|3, 4YLO|1|6, 5IPL|1|3, 5IPM|1|3, 5IPN|1|3(1) 4YLO|1|9(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15IPM|1|3SigmaS-transcription initiation complex with 4-nt nascent RNAX-RAY DIFFRACTION4.23
25IPN|1|3SigmaS-transcription initiation complex with 4-nt nascent RNAX-RAY DIFFRACTION4.613
35IPL|1|3SigmaS-transcription initiation complex with 4-nt nascent RNAX-RAY DIFFRACTION3.63
44YLN|1|6E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-RAY DIFFRACTION5.53
54YLN|1|9E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-RAY DIFFRACTION5.53
64YLO|1|6E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-RAY DIFFRACTION63
74YLN|1|3E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNAX-RAY DIFFRACTION5.53
84YLO|1|3E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-RAY DIFFRACTION63
94YLO|1|9E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNAX-RAY DIFFRACTION63

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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