BGSU RNA Site //

Equivalence class NR_20.0_96269.11 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14KZZ|1|j (rep)Transfer RNAinitiator Met-RNA-i, mRNAHomo sapiensEukaryaRF00005Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
26ZP4|1|1Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.92020-07-29
36QZP|1|S6Transfer RNAE site tRNA (75-MER)Homo sapiensEukaryaRF00005High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
47QVP|1|B5Transfer RNAtRNA P/E, mRNAHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
57A09|1|fTransfer RNAtRNAHomo sapiensEukaryaRF00005Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.52020-10-14
65T2C|1|AnTransfer RNAtRNAHomo sapiensEukaryaRF00005CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
76Y57|1|B4Transfer RNAP/E tRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
84UG0|1|S6Transfer RNAHUMAN INITIATOR MET-TRNA-IHomo sapiensEukaryaRF00005STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
94V6X|1|BCTransfer RNAE-tRNAHomo sapiensEukaryaRF00005Structure of the human 80S ribosomeElectron microscopy52014-07-09
106FEC|1|NTransfer RNATransfer RNA (75-MER), Messenger RNA (26-MER)Homo sapiensEukaryaRF00005Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14

Release history

Release3.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.273
Date2022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_96269.11NR_20.0_96269.103.252(9) 7A09|1|f, 6ZP4|1|1, 6Y57|1|B4, 6QZP|1|S6, 6FEC|1|N, 5T2C|1|An, 4V6X|1|BC, 4UG0|1|S6, 4KZZ|1|j(1) 7QVP|1|B5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_96269.11NR_20.0_96269.123.274(10) 4UG0|1|S6, 7QVP|1|B5, 4KZZ|1|j, 7A09|1|f, 6ZP4|1|1, 6Y57|1|B4, 6QZP|1|S6, 6FEC|1|N, 5T2C|1|An, 4V6X|1|BC(0) (2) 8BSI|1|Lu, 8BR8|1|Lu

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16QZP|1|S6High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.975
24UG0|1|S6STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.675
35T2C|1|AnCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.675
47QVP|1|B5Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
56Y57|1|B4Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.575
64V6X|1|BCStructure of the human 80S ribosomeELECTRON MICROSCOPY575
76FEC|1|NHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.375
86ZP4|1|1SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.975
97A09|1|fStructure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.575
104KZZ|1|jRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.0375