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Equivalence class NR_20.0_96269.13 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14KZZ|1|j (rep)Transfer RNAinitiator Met-RNA-i, mRNAHomo sapiensEukaryaRF00005Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
26ZP4|1|1Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.92020-07-29
36QZP|1|S6Transfer RNAE site tRNA (75-MER)Homo sapiensEukaryaRF00005High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
47QVP|1|B5Transfer RNAtRNA P/E, mRNAHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
58BTR|1|uTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.252023-03-22
68BTR|1|vTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.252023-03-22
78BSI|1|LuTransfer RNAE-site tRNAGiardia intestinalisEukaryaRF00005Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)Electron microscopy3.42023-03-15
87A09|1|fTransfer RNAtRNAHomo sapiensEukaryaRF00005Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.52020-10-14
95T2C|1|AnTransfer RNAtRNAHomo sapiensEukaryaRF00005CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
106Y57|1|B4Transfer RNAP/E tRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
114UG0|1|S6Transfer RNAHUMAN INITIATOR MET-TRNA-IHomo sapiensEukaryaRF00005STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
128BR8|1|LuTransfer RNAE-site tRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia ribosome in POST-T state (A1)Electron microscopy3.352023-03-15
138BTD|1|uTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.92023-03-22
148BTD|1|vTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.92023-03-22
154V6X|1|BCTransfer RNAE-tRNAHomo sapiensEukaryaRF00005Structure of the human 80S ribosomeElectron microscopy52014-07-09
166FEC|1|NTransfer RNATransfer RNA (75-MER), Messenger RNA (26-MER)Homo sapiensEukaryaRF00005Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14
178BSJ|1|vTransfer RNAtRNA, mRNAGiardia intestinalisEukaryaRF00005Giardia Ribosome in PRE-T Classical State (C)Electron microscopy6.492023-03-22
188BSJ|1|uTransfer RNAtRNA, mRNAGiardia intestinalisEukaryaRF00005Giardia Ribosome in PRE-T Classical State (C)Electron microscopy6.492023-03-22

Release history

Release3.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.304
Date2023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_96269.13NR_20.0_96269.123.275(12) 5T2C|1|An, 7A09|1|f, 4V6X|1|BC, 6ZP4|1|1, 4UG0|1|S6, 6Y57|1|B4, 8BSI|1|Lu, 4KZZ|1|j, 6QZP|1|S6, 8BR8|1|Lu, 6FEC|1|N, 7QVP|1|B5(6) 8BTD|1|u, 8BTR|1|u, 8BSJ|1|v, 8BTD|1|v, 8BSJ|1|u, 8BTR|1|v(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_96269.13NR_20.0_96269.143.305(18) 6ZP4|1|1, 6Y57|1|B4, 6QZP|1|S6, 6FEC|1|N, 5T2C|1|An, 4V6X|1|BC, 4UG0|1|S6, 8BTR|1|v, 4KZZ|1|j, 8BTR|1|u, 8BTD|1|v, 8BTD|1|u, 8BSJ|1|v, 8BSJ|1|u, 8BSI|1|Lu, 8BR8|1|Lu, 7QVP|1|B5, 7A09|1|f(0) (1) 8PPL|1|Iw

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16QZP|1|S6High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.975
24UG0|1|S6STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.675
35T2C|1|AnCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.675
48BSJ|1|uGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.4975
58BR8|1|LuGiardia ribosome in POST-T state (A1)ELECTRON MICROSCOPY3.3557
68BSI|1|LuGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)ELECTRON MICROSCOPY3.475
78BTD|1|uGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.975
88BTR|1|uGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.2575
97QVP|1|B5Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
106Y57|1|B4Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.575
114V6X|1|BCStructure of the human 80S ribosomeELECTRON MICROSCOPY575
126FEC|1|NHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.375
136ZP4|1|1SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.975
147A09|1|fStructure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.575
154KZZ|1|jRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.0375
168BSJ|1|vGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.4975
178BTR|1|vGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.2575
188BTD|1|vGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.975
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