Equivalence class NR_20.0_99632.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|1 (rep) | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 2018-12-05 |
| 2 | 6FYX|1|1 | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 2018-12-05 |
| 3 | 1YFG|1|A | Transfer RNA | YEAST INITIATOR TRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 1997-09-03 |
| 4 | 5OA3|1|1 | Transfer RNA | initiator Met-tRNA-i | Saccharomyces cerevisiae | Eukarya | RF00005 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 2017-08-09 |
| 5 | 3J81|1|1 | Transfer RNA | Met-tRNAi, mRNA | RF00005 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 2014-11-05 | ||
| 6 | 6GSM|1|1 | Transfer RNA | Met-tRNAi, mRNA (5'-R(P*AP*AP*U)-3') | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 5.15 | 2019-07-31 |
| 7 | 6GSN|1|1 | Transfer RNA | tRNAi (75-MER), mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 5.75 | 2019-06-26 |
| 8 | 3JAQ|1|1 | Transfer RNA | Met-tRNAi, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 6 | 2015-08-12 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_99632.5 | NR_20.0_46777.1 | 3.98 | (1) 1YFG|1|A | (7) 3JAQ|1|1, 6FYX|1|1, 6GSM|1|1, 3J81|1|1, 5OA3|1|1, 6FYY|1|1, 6GSN|1|1 | (0) |
| NR_20.0_99632.5 | NR_20.0_77184.1 | 3.98 | (1) 5OA3|1|1 | (7) 3J81|1|1, 6FYX|1|1, 6GSM|1|1, 1YFG|1|A, 3JAQ|1|1, 6FYY|1|1, 6GSN|1|1 | (0) |
| NR_20.0_99632.5 | NR_20.0_99632.6 | 3.98 | (6) 6GSN|1|1, 3JAQ|1|1, 6FYX|1|1, 6FYY|1|1, 3J81|1|1, 6GSM|1|1 | (2) 1YFG|1|A, 5OA3|1|1 | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3J81|1|1 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 74 |
| 2 | 6GSN|1|1 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 5.75 | 75 |
| 3 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 |
| 4 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 |
| 5 | 6GSM|1|1 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 5.15 | 64 |
| 6 | 3JAQ|1|1 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 6 | 64 |
| 7 | 1YFG|1|A | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 64 |
| 8 | 5OA3|1|1 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 75 |